Next Article 
Infection and Immunity, December 1998, p. 5599-5606, Vol. 66, No. 12
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Molecular and Functional Characterization of
Salmonella enterica Serovar Typhimurium poxA
Gene: Effect on Attenuation of Virulence and Protection
Koné
Kaniga,1,*
Melissa S.
Compton,1
Roy
Curtiss III,1,2 and
Preeti
Sundaram1
Megan Health, Inc., St. Louis, Missouri
63110,1 and
Department of Biology,
Washington University, St. Louis, Missouri 631302
Received 2 January 1998/Returned for modification 30 March
1998/Accepted 28 September 1998
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ABSTRACT |
Salmonella enterica poxA mutants exhibit a pleiotropic
phenotype, including reduced pyruvate oxidase activity; reduced growth rate; and hypersensitivity to the herbicide sulfometuron methyl,
-ketobutyrate, and amino acid analogs. These mutants also failed to
grow in the presence of the host antimicrobial peptide, protamine. In
this study, PoxA
mutants of S. enterica
serovar Typhimurium (S. typhimurium) were found to be
10,000-fold attenuated in orally inoculated BALB/c mice and 1,000-fold
attenuated in intraperitoneally inoculated BALB/c mice, compared to
wild-type S. typhimurium UK-1. In addition, poxA mutants were found to be capable of colonizing the
spleen, mesenteric lymph nodes, and Peyer's patches; to induce strong humoral immune responses; and to protect mice against a lethal wild-type Salmonella challenge. A 2-kb DNA fragment was
isolated from wild-type S. typhimurium UK-1 based on its
ability to complement an isogenic poxA mutant. The
nucleotide sequence of this DNA fragment revealed an open reading frame
of 325 amino acids capable of encoding a polypeptide of 36.8 kDa that
was confirmed in the bacteriophage T7 expression system. Comparison of
the translated sequence to the available databases indicated high
homology to a family of lysyl-tRNA synthetases. Our results indicate
that a mutation of poxA has an attenuating effect on
Salmonella virulence. Further, poxA mutants are
immunogenic and could be useful in designing live vaccines with a
variety of bacterial species. To our knowledge, this is the first
report on the effect of poxA mutation on bacterial virulence.
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INTRODUCTION |
The pyruvate oxidase of
Escherichia coli is a peripheral membrane protein that
catalyzes the oxidative decarboxylation of pyruvate to acetate and
CO2 (19). Under laboratory conditions, this
enzyme is not essential and conversion of pyruvate to acetate is
considered a waste of energy, compared with its conversion to acetyl
coenzyme A (18). Pyruvate oxidase has been of interest primarily as a model for studying protein-lipid interaction. The enzyme
is a water-soluble tetramer of identical 62-kDa subunits (18). It requires thiamine pyrophosphate, flavin adenine
dinucleotide, and Mg2+ as cofactors (2, 3, 19).
In the presence of the substrate and cofactors, the enzyme undergoes
conformational changes and binds to E. coli membrane
vesicles and to phospholipid vesicles (38, 43). This
peripheral membrane binding is necessary for the terminal transfer of
electrons to ubiquinone-8, which is dissolved in the lipid bilayer
(20, 28).
To study protein-lipid interactions by genetic means, mutations in two
genes affecting pyruvate oxidase activity have been identified. The
structural gene for pyruvate oxidase, poxB, has been located
at 18.7 min on the E. coli genetic map (5), and a
regulatory gene, poxA, has been located at 94 min
(4). Enzymatic and immunological data indicated that
mutations in poxA result in a 6- to 10-fold decrease in
pyruvate oxidase levels (4, 5). Chang and Cronan reported
that poxA mutants grew more slowly than the isogenic parent
in both minimal and rich media, while poxB mutants exhibited
normal growth.
In their efforts to elucidate the mechanism of inhibition of
acetolactate synthase II by the herbicide sulfometuron methyl (SM)
{N-[(4,6-dimethylpyrimidin-2-yl)aminocarbonyl]-2-methoxycarbonyl-benzenesulfonamide} in Salmonella enterica serovar Typhimurium (S. typhimurium), Van Dyk and LaRossa (48) isolated 15 mutant strains sensitive to SM, following Tn10 mutagenesis.
Among these SM-hypersensitive mutations, a poxA mutation was
identified and mapped to the 94-min region of the S. typhimurium genetic map (49), a location analogous to
that of poxA in E. coli. Like the E. coli counterpart, the S. typhimurium poxA mutant
exhibited reduced pyruvate oxidase activity and growth rate
(49). Furthermore, the E. coli and S. typhimurium poxA mutants shared several additional phenotypes including hypersensitivity to SM;
-ketobutyrate (AKB); and a wide
range of bacterial growth inhibitors such as antibiotics, amino acid
analogs, and dyes (49). Since mutants defective in poxB did not exhibit these phenotypes, it was concluded that
a mutation within the poxA regulatory locus of E. coli and S. typhimurium would result in pleiotropic
effects not due solely to decreased poxB expression.
Although the poxA gene was identified 16 years ago,
molecular and functional data on the gene and gene product are lacking. In this study, we cloned and determined the nucleotide sequence of the
poxA gene and characterized the poxA gene product
of S. typhimurium. Our results show for the first time that
S. typhimurium mutants with deletions of the poxA
gene are attenuated and immunogenic.
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MATERIALS AND METHODS |
Bacterial strains, plasmids, and growth conditions.
The
bacterial strains used in this study and their sources are listed in
Table 1. Bacteriophage
P22HTint was used for transduction of markers into
Salmonella strains (41). Strains were grown in
Luria broth (LB), Lennox medium (32), or antibiotic no. 2 (AB2) agar (Difco, Detroit, Mich.). When required, antibiotics were
added to the growth media at the following concentrations: kanamycin,
50 µg/ml; ampicillin, 100 µg/ml; streptomycin, 100 µg/ml;
tetracycline, 12.5 µg/ml.
Recombinant DNA, genetic techniques, and nucleotide
sequencing.
Recombinant DNA techniques were performed according to
standard procedures (40). Total DNAs from
Salmonella, Shigella, Klebsiella, Pseudomonas, Pasteurella, and Borrelia
species were isolated according to a published protocol
(34). Total DNAs of Mycobacterium tuberculosis and Erysipelothrix rhusiopathiae were kindly provided by J. Clark-Curtiss and T. K. Ball, respectively. Total DNA was digested
with ClaI or EcoRV and resolved on a 0.8%
agarose gel. Southern blotting and hybridization were performed
according to standard procedures (40). DNA probes were
fluorescein labeled (Amersham, Arlington Heights, Ill.) according to
the manufacturer's instructions. Transformation of plasmid DNA into
E. coli and Salmonella strains by electroporation was carried out as described elsewhere (36) by using an
E. coli Gene Pulser apparatus (Bio-Rad Laboratories,
Richmond, Calif.). The poxA401::Tn10
insertion (48, 49) was moved into S. typhimurium UK-1 by P22HTint transduction as previously described
(42). Expression and [35S]methionine labeling
of plasmid-encoded polypeptides in a bacteriophage T7 expression system
were carried out as described elsewhere (47), with E. coli BL21(DE3) as host (46) for the expression vectors derived from plasmid pBluescript II (Stratagene, La Jolla, Calif.). Nucleotide sequence determination was performed by ACGT, Inc. (Northbrook, Ill.), with double-stranded DNA as the template, and both
strands were sequenced. Nucleotide sequence analyses were performed
with the MacVector software package (version 5). Comparison of
translated and nontranslated nucleotide sequences with those in the
available databases was carried out with the BLAST program at the
server of the National Center for Biotechnology Information at the
National Library of Medicine (1).
Construction of
poxA270 defined deletion
strains.
A defined deletion in poxA was constructed by
removing the last 270 amino acids of PoxA encoded by a 1,018-bp
BstBI-XhoI fragment of pMEG-273, filling in the
termini with the large fragment of DNA polymerase I, and religating,
yielding plasmid pMEG-279. A 1-kb XhoI-XbaI
fragment of pMEG-279, carrying the mutated
poxA270 allele
and flanking sequences, was cloned into the
SalI-XbaI sites of the R6K-derived replicon
pKNG101 (24) to give the suicide plasmid pMEG-280. The
defined mutation
poxA270 was subsequently recombined into
the S. typhimurium UK-1 chromosome by bacterial mating
according to the procedure described elsewhere (23) with the
following modification: 100 µl of fresh overnight culture of the
universal donor E. coli MGN-617 (Table 1) harboring the suicide plasmid pMEG-280 and 100 µl of the recipient S. typhimurium
3761 were mixed in 5 ml of buffered
saline gelatin. The solution was filtered through a
0.45-µm-pore-size-filter, which was then placed on the surface of an
L-agar plate containing 100 µg of diaminopimelic acid per ml and
incubated at 37°C for at least 8 h. Bacteria bound to the filter
were then resuspended in 5 ml of buffered saline gelatin, and 10-fold
dilutions were plated onto LB agar containing 100 µg of streptomycin
per ml. Single recombinants that had the plasmid integrated into the
chromosome were grown in LB in the absence of antibiotic selection, and
10-fold dilutions were plated on AB2 agar medium containing 5% sucrose to select for strains that had undergone resolution of the cointegrate by recombination. Double-crossover recombinants were tested for streptomycin sensitivity due to loss of the suicide plasmid, for the
PoxA
phenotype on AB2 plates, and for sensitivity to 1.25 mg of protamine sulfate per ml.
Animal experiments.
Oral and intraperitoneal inoculations of
6- to 7-week-old female BALB/c mice with the different S. typhimurium strains were carried out as previously described
(17).
Analysis of the humoral immune responses.
The humoral immune
responses to S. typhimurium poxA mutants were assessed by
enzyme-linked immunosorbent assay (ELISA). Microtiter plates were
coated with 250 ng of S. typhimurium lipopolysaccharide (LPS) (Sigma, St. Louis, Mo.) per well in 0.2% trichloroacetic acid
(pH 7.4) for 2 h at 37°C. Free binding sites were blocked with
3% bovine serum albumin and 0.1% Tween in phosphate-buffered saline
(PBS) for 30 min at room temperature. Washes were performed with
PBS-Tween between incubations. Plates were incubated with mouse sera
diluted in PBS-Tween for 1 h at 37°C, followed by a 1-h
incubation at 37°C with the secondary antibody goat anti-mouse immunoglobulin A (IgA)-, IgM-, or IgG-conjugated alkaline phosphatase (Kirkegaard & Perry Laboratories, Inc., Gaithersburg, Md.) diluted 1:500 in PBS-Tween. Plates were developed with
p-nitrophenylphosphate (Sigma), and the optical density at
405 nm was measured after a 30-min incubation at 37°C.
Nucleotide sequence accession number.
The nucleotide
sequence described in this paper has been deposited in GenBank under
accession no. AF001831.
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RESULTS |
Construction of S. typhimurium poxA mutants and cloning
of the poxA gene by genetic complementation.
The
poxA401::Tn10 allele was introduced
into wild-type S. typhimurium UK-1 strain
3761 by P22 transduction (see Materials and Methods) by
using a P22 lysate grown on S. typhimurium SMS401, to
generate strain MGN-791 (Table 1). Although poxA mutants
grow slower than the parent (4), this differential growth
rate does not appear to be a strong phenotype. Unlike the LT2
derivative strain SMS401, which exhibits hypersensitivity to AKB
(48, 49), we found that S. typhimurium UK-1
poxA401::Tn10 showed only marginal sensitivity to AKB (data not shown). Therefore, we screened a range of
bacteriological media for substantial difference in growth rates
between poxA mutants and the isogenic parent. We found that MGN-791, a poxA401::Tn10 derivative of
S. typhimurium UK-1, produced microcolonies on MacConkey and
AB2 agar, compared to the parental strain, which produced large
colonies. A fusaric-acid-resistant derivative of MGN-791 was selected
following Tn10 deletion to generate MGN-816, which also
produced microcolonies on AB2 agar (Fig.
1). Under the same conditions, the
parental strain
3761 produced normal-size colonies on
both AB2 agar and LB agar plates.

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FIG. 1.
Phenotype of S. typhimurium poxA mutants on
AB2 agar medium. 3761, wild-type UK-1; MGN-816,
poxA402; MGN-939, MGN-816(pMEG-250). The plate was
photographed after 17 h of incubation at 37°C.
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The
poxA gene was cloned based upon its ability to restore
normal growth to a
poxA-defective strain, MGN-816, on AB2
agar
medium. A genomic library of wild-type
S. typhimurium
UK-1 strain

3761 in a pUC19-derived vector, pNEB193, was
used to select
a clone expressing PoxA. This library was introduced
into
S. typhimurium MGN-816 by electroporation and selection
on an AB2 agar plate
containing ampicillin. Among ~5,000
ampicillin-resistant microcolonies,
one transformant, MGN-939,
exhibited a large colony morphology
(Fig.
1), indicating that strain
MGN-939 had acquired a DNA fragment
capable of fully complementing the
growth defect of the
poxA mutant.
The plasmid, designated
pMEG-250, was purified and introduced
into
E. coli CC118
pir. A partial restriction map of the 2-kb
DNA insert in
pMEG-250 was established (Fig.
2). To
ensure that
the complementation was due solely to cloned
poxA and not to an
unknown secondary mutation acquired
during the selection, pMEG-250
was reintroduced into MGN-816. All
transformants were complemented
to the large colony phenotype on AB2
agar, suggesting that the
2-kb DNA fragment of UK-1 in pMEG-250 encodes
an active PoxA protein.
Alternatively, the DNA fragment could also
encode a suppressor
of
poxA, as the complementing pMEG-250
is a high-copy-number plasmid.
To address that possibility, we
performed a Southern blot analysis
of
ClaI-digested total
DNA from the parental strain

3761
and the transposon
Tn
10 insertion in
poxA strain MGN-791, with
the
labeled 2-kb insert from pMEG-250 as the probe. The data in
Fig.
3 show that the probe hybridized to a
single 7.5-kb
ClaI
fragment in the parent (lane 2) and to
two
ClaI fragments (7.5
and 9.5 kb) in
poxA401::Tn
10 (lane 1). These data are
consistent
with the size of transposon Tn
10 (9.3 kb) and the
internal
ClaI
site (
27). The results confirmed
that the 2-kb DNA fragment
of pMEG-250 encodes the
poxA
gene.

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FIG. 2.
Partial restriction endonuclease maps of the
poxA insert on relevant plasmids. The positions of relevant
restriction endonucleases are shown. The direction of transcription of
the poxA gene is indicated by the arrow. The plasmid
replicon is indicated in parentheses.
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FIG. 3.
Southern blot analyses of S. typhimurium poxA
transposon insertion mutant. Chromosomal DNA from mutant and isogenic
wild-type strains was digested with ClaI or EcoRV
and transferred to a GeneScreen Plus nylon membrane. The blot was
hybridized to a fluorescein-labeled 2-kb DNA probe containing the
poxA gene. Std, 1-kb DNA ladder; lane 1, ClaI-digested MGN-791
(poxA401::Tn10); lane 2, ClaI-digested 3761 (parent); lane 3, EcoRV-digested MGN-791
(poxA401::Tn10); lane 4, ClaI-digested pMEG-250.
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We next wondered whether the cloned
poxA gene was
expressed from its natural promoter. The
poxA-encoding
fragment was cloned
in both orientations with respect to the
plasmid-encoded
lac promoter,
generating pMEG-251 and
pMEG-273 (Fig.
2). Both pMEG-251 and pMEG-273
were able
to complement
poxA401::Tn
10 mutation
(data not shown),
indicating that the 2-kb DNA fragment carries a
promoter sequence
necessary for the expression of
poxA. In
the absence of antibiotic
selection, the high-copy-number plasmids,
pMEG-250, pMEG-251,
and pMEG-273, were unstable and were lost at a high
frequency
(data not shown). Therefore, the
poxA gene was
subcloned into
the low-copy-number pLG339 vector (
45), a
pSC101 derivative,
to give pMEG-274 (Fig.
2). On this plasmid,
poxA was in opposite
orientation in regard to the
tet promoter. This construct was
stable in
S. typhimurium and was used in subsequent complementation
experiments.
Nucleotide sequence of the poxA gene: poxA
encodes the second lysyl-tRNA synthetase in Salmonella.
The
2-kb DNA fragment of plasmid pMEG-250 was sequenced on both strands
(see Materials and Methods). The nucleotide sequence (GenBank accession
no. AF001831) was analyzed with MacVector 5.0 software. Searches
for homology in the available databases were performed with the BLAST
program at the National Center for Biotechnology Information
(1). At the nucleotide level, the 2,008 bp showed 81%
identity to the 94-min region of the E. coli chromosome,
including yjeA and yjeM, and 61% identity to a
segment in the Haemophilus influenzae chromosome including
the yjeA and yjbM genes. This is in agreement
with the map position of poxA401::Tn10 determined in S. typhimurium. yjeA and
yjeM/yjbM were identified during the automated sequencing of
the genome of these organisms. No function has been assigned to their
corresponding gene products. One complete open reading frame (ORF) and
one truncated ORF were found in the 2,008-bp sequence. The first ORF,
preceded by a putative Shine-Dalgarno sequence, starts at nucleotide
345 and encodes a polypeptide of 325 amino acids with a predicted pI of
5.1 and molecular mass of 36.8 kDa. This complete ORF was assigned to the PoxA protein. Hydrophobicity analysis using the algorithm of Kyte
and Doolittle (30) indicated that PoxA does not have a
signal sequence or membrane-spanning domain, suggesting
that PoxA is a cytoplasmic protein. PoxA showed 91 and 65%
identity to GenX (YjeA) of E. coli (29) and
H. influenzae, respectively. GenX (YjeA) has not been
characterized at the molecular level, and no function has been ascribed
to this protein in either organism. However, PoxA and GenX appear to
belong to a family of class II lysyl-tRNA synthetases. This family of
enzymes is characterized by two motifs: signature 1, FRNEEMGRHHNPEFTMLE, and signature 2, ALGVDRLVML. The second
ORF, preceded by a putative Shine-Dalgarno sequence, starts at
nucleotide 1548 and was truncated at nucleotide 2,008. This ORF was
found to be homologous to E. coli YjeM (88% identity and
96% similarity). Although the transposon Tn10 insertion has
not been mapped, it is reasonable based upon the genetic
complementation and defined deletion (see below) to state that the
insertion took place in the poxA coding region. The
complementation of the poxA401::Tn10 mutation by pMEG-274 suggests that the downstream gene does not have a
role in the phenotypes ascribed to poxA in this study.
Expression of poxA in a bacteriophage T7 RNA polymerase
expression system.
The 2-kb DNA fragment capable of complementing
the poxA mutation was cloned in both orientations under the
control of the bacteriophage T7 promoter in the vector pKSII, to
generate pMEG-251 and pMEG-273 (Fig. 2). Plasmid-encoded polypeptides
were examined as previously described (47). Cell lysates of
E. coli BL21(DE3) carrying pMEG-251 (Fig.
4, lane 2) showed a polypeptide with a molecular mass of about 36 kDa which was absent from lysates of cells
carrying either pMEG-273 (Fig. 4, lane 3) or the vector alone (Fig. 4,
lane 1). The size of the expressed polypeptide is in complete agreement
with the predicted size of PoxA. A 15-kDa polypeptide corresponding to
the truncated ORF 2 was not detected under these experimental
conditions.

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FIG. 4.
Identification of poxA gene product by using
the T7 expression system. poxA was cloned in both
orientations under the control of the bacteriophage T7 promoter in the
vector pKSII and introduced into E. coli BL21(DE3), which
carries a bacteriophage T7 RNA polymerase gene under the control of the
lac promoter. After induction, whole-cell lysate proteins
were separated on an SDS-polyacrylamide gel as described in Materials
and Methods. Numbers on the left indicate the positions of molecular
mass standards (in kilodaltons). The arrow indicates a polypeptide of
about 36 kDa specifically encoded by pMEG-251, the putative gene
product of poxA. pMEG-251, poxA under the T7
promoter; pMEG-273, poxA in opposite orientation from the T7
promoter; pKSII, vector control.
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Construction of
poxA270 defined deletion strain of
S. typhimurium UK-1.
A defined deletion in
poxA was constructed in S. typhimurium UK-1 as
described in Materials and Methods, resulting in strain MGN-1036 (Table
1). In this strain, DNA coding for the last 270 amino acids of PoxA was
deleted. MGN-1036 gave rise to microcolonies on AB2 agar medium and
reduced growth rate in LB as expected. The deletion was confirmed by
Southern blot analysis with the 2-kb DNA fragment encoding
poxA as the probe (data not shown). Moreover, the defined
poxA270 deletion was fully complemented by plasmid
pMEG-274 (poxA+) for normal growth rate and for
virulence (see below). It has been reported elsewhere that S. typhimurium mutants sensitive to antimicrobial cationic peptides
such as defensins and protamine also show reduced virulence
(21). MGN-1036 failed to grow in the presence of 1.25 mg of
protamine sulfate per ml, while the isogenic parent exhibited normal
growth at that concentration. This phenotype was complementable by
pMEG-274. MGN-1036 was characterized biochemically with API strips. The
results showed no biochemical difference between the parent and the
poxA mutant. The growth rate of the defined deletion strain
MGN-1036 was identical to that of the previous poxA mutants
MGN-791 and MGN-816. Taken together, the
poxA270 defined
mutant was phenotypically identical to the transposon-generated strains.
S. typhimurium poxA mutants are attenuated in virulence
in mice.
In S. typhimurium and Salmonella
typhi, mutations in several global regulatory loci including
cya/crp (9, 26), phoPQ (17,
35), rpoS (8, 13, 37, 50), and
ompR (11) have been associated with reduced
virulence, without loss of immunogenicity in mice. poxA
exhibits pleiotropic effects due to its global regulatory nature
(49). To confirm a role of the poxA mutation in
virulence, we compared the poxA mutant derivatives of
S. typhimurium with the parental strain in the mouse typhoid
model. Similar results were obtained in two independent studies. The
data below are from the experiment conducted with
poxA270
defined deletion strain MGN-1036, MGN-1154 (MGN-1036 carrying the
poxA-complementing plasmid pMEG-274), and the
3761 parental strain. Treatment groups of 7-week-old female BALB/c
mice were orally inoculated with the doses indicated in Table
2. Eight days postinoculation, three mice
were removed from the treatment group inoculated with 3.2 × 109 CFU of MGN-1036 and euthanized to determine the level
of colonization in the spleen, mesenteric lymph nodes, and Peyer's
patches. The results show on average 1.4 × 105 CFU in
the spleen, 7.7 × 104 CFU in the mesenteric lymph
nodes, and 2.2 × 105 CFU in the Peyer's patches.
These data indicate that the
poxA270 defined mutant of
S. typhimurium UK-1 was capable of colonizing deep tissues
in mice after oral inoculation. Following immunization, mice were
monitored daily for 21 days. The oral and intraperitoneal 50% lethal
doses (LD50) of wild-type S. typhimurium UK-1
are 7.1 × 104 and ~10 CFU, respectively
(25a). All mice orally infected with 2.2 × 105 CFU of wild-type bacteria died within 10 days. In the
MGN-1036 treatment groups, mice did not develop any clinical signs of
typhoid fever (e.g., scruffiness) such as were seen in wild-type
Salmonella-infected mice. Even mice receiving the highest
oral dose, 3.2 × 109 CFU, of the defined
poxA270 strain survived. Moreover, mice inoculated with
the
poxA270-complementing strain, MGN-1154, died within
10 days irrespective of the doses (Table 2). These results confirmed
that the attenuation of S. typhimurium virulence was due to
the mutation in the poxA gene. In addition, this phenotype could be reversed to the parental virulence by using the
low-copy-number plasmid, pMEG-274, carrying the functional
poxA gene.
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TABLE 2.
Attenuation of S. typhimurium poxA270
mutant MGN-1036 and complementation in 7-week-old female BALB/c mice
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We determined whether the
S. typhimurium
poxA270 mutant
could protect the immunized mice against lethal wild-type
Salmonella challenge. Control and immunized mice were orally
challenged with
2.6 × 10
8 CFU of virulent UK-1 strain

3761 (~10,000 × LD
50), 35 days
postimmunization. All control mice died within 10 days following
challenge, and the experiment was terminated 16 days postchallenge.
During that time, none of the vaccinated mice showed any clinical
signs
of disease, and all mice had survived ~10,000 × LD
50 of
wild-type
Salmonella challenge after a
single oral immunization
(Table
2). Mice were then euthanized, and the
spleen of each
was examined for the presence of the immunizing and
challenge
strains. No bacteria were detected, suggesting that
S. typhimurium
poxA270 mutants were capable of protecting mice
from the wild-type
colonization of visceral
organs.
Immunogenicity of S. typhimurium poxA mutants in
mice.
The immunogenicity of the defined deletion strain MGN-1036
was assessed, with the results for individual mice presented in Table
3. Humoral immune responses were measured
by ELISA with purified Salmonella LPS as the coating antigen
(see Materials and Methods). Sera were collected 29 days after a single
oral immunization and 16 days postchallenge. High IgG, IgA, and, to a
lesser extent, IgM titers were detected in orally immunized animals,
indicating that the
poxA270 mutant derivative of S. typhimurium was very immunogenic in mice. Mice receiving the
highest oral dose, 3.2 × 109 CFU, were found to have
higher IgG titers than mice receiving a log less bacteria (Table 3).
However, both groups of mice were found to respond well to challenge as
indicated by IgG titers postchallenge.
The data from this animal study demonstrate that
S. typhimurium
poxA270 mutants are attenuated and immunogenic. Moreover,
poxA mutants are capable of protecting mice against a
wild-type
lethal challenge and colonization of deep tissues. Nearly
identical
results were obtained in another study using the
Tn
10 deletion
strain MGN-816 (data not shown). Furthermore,
mice inoculated
by the intraperitoneal route with 10
4 CFU
of this
poxA402 mutant, a dose equivalent to
~1,000 × LD
50 of the parent, remained alive
throughout the study (data not
shown).
The poxA gene is present in other pathogenic
microorganisms.
Lastly, we questioned whether poxA was
present in the genome of other bacterial species in addition to
Salmonella, H. influenzae, and E. coli. To address this possibility, total DNA was purified from
S. typhimurium, Shigella flexneri, Yersinia
enterocolitica, Klebsiella pneumoniae,
Pseudomonas aeruginosa, Pasteurella multocida, Borrelia burgdorferi, M. tuberculosis, and
E. rhusiopathiae. Ten micrograms of ClaI-digested
genomic DNA was subjected to Southern blot analysis (see Materials and
Methods), with a labeled 1-kb BstBI-XhoI internal
fragment of poxA as a probe. Despite the stringent hybridization and washing conditions (50°C, 1× SSC [1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate], 0.1% sodium dodecyl sulfate
[SDS]), the results in Fig. 5 show that
strong signals were detected in S. flexneri (three
bands), Y. enterocolitica (one band), K. pneumoniae (one band), and P. multocida (two bands). Multiple hybridization bands in S. flexneri and P. multocida indicate the presence of other lysyl-tRNA synthetases
(LysS and/or LysU) in these bacterial species. No hybridization bands
were detected in M. tuberculosis, B. burgdorferi,
P. aeruginosa, and E. rhusiopathiae (Fig. 5).
These results indicate that poxA is present in other organisms in addition to Salmonella, E. coli, and
H. influenzae.

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FIG. 5.
Detection of the poxA gene in other bacterial
species. Total DNA from S. typhimurium (5 µg), S. flexneri (10 µg), Y. enterocolitica (10 µg),
K. pneumoniae (3 µg), P. aeruginosa (10 µg),
M. tuberculosis (10 µg), E. rhusiopathiae (10 µg), B. burgdorferi (10 µg), and P. multocida
(10 µg) was digested with the restriction enzyme ClaI. DNA
fragments were separated on a 0.8% agarose gel and transferred to a
GeneScreen Plus nylon membrane. The blot was hybridized to a
fluorescein-labeled 1-kb BstBI-XhoI internal
fragment of poxA as a probe. The hybridization was carried
out at 50°C with stringent washes in 1× SSC-0.1% SDS. The limited
amount of genomic DNA available from K. pneumoniae could
account for the weak signal. Numbers at left show molecular mass in
kilodaltons.
|
|
 |
DISCUSSION |
We introduced a poxA mutation in S. typhimurium UK-1 by P22 transduction from an LT2 strain carrying a
Tn10 insertion in the gene (48). A clone from an
S. typhimurium library was found to complement the effect of
the poxA mutation and to hybridize to the poxA
locus by Southern blot analysis (Fig. 3). Analysis of the 2-kb DNA
sequence revealed one ORF capable of encoding a 36.8-kDa polypeptide,
PoxA, which was confirmed in a bacteriophage T7 RNA polymerase
expression system (Fig. 4). A homology search in the available
databases showed that the poxA gene and encoded polypeptide
were homologous to a family of class II lysyl-tRNA synthetases from
several organisms. In bacteria, each of the 20 amino acids requires a
specific cognate amino acyl-tRNA synthetase, except lysine. Two genes
encoding functional lysyl-tRNA synthetases have been identified and
characterized at the molecular level in E. coli K-12.
lysS and lysU encode the constitutive LysS
(25) and temperature-regulated LysU (22)
lysyl-tRNA synthetases, respectively. Although mutations in
lysU have no detectable phenotype, an alteration of
lysS results in growth restriction at temperatures below
30°C (25). E. coli LysS and LysU have strong
similarity over their entire length and migrate at similar positions on
a two-dimensional electrophoresis gel (12, 33). Kong and
colleagues (29) reported that genX, a gene
located at min 94 on the E. coli genetic map, encodes a
polypeptide with similarity to the carboxy terminus of LysS and LysU
(7). It appears then that E. coli encodes three
lysyl-tRNA synthetases, LysS, LysU, and GenX. Although the
lysS gene has been mapped at 66.2 min on the Salmonella chromosome, a location similar to that of the
E. coli counterpart (12), the lysU
gene is absent from the Salmonella genome (39).
To our knowledge, this is the first report showing that PoxA is the
second putative lysyl-tRNA synthetase in Salmonella (the
first being LysS) and that genX and poxA are
allelic. We detected the presence of the poxA sequence in
several bacterial species including S. flexneri, Y. enterocolitica, K. pneumoniae, and P. multocida, by Southern blot analysis (Fig. 5).
The role of PoxA as a lysyl-tRNA synthetase in S. typhimurium remains unclear. In a preliminary study, we observed
that the poxA mutation increases the levels of the Sip (Ssp)
proteins in the culture supernatant. These proteins are secreted
through the S. typhimurium type III protein secretion
apparatus encoded in pathogenicity island I. The amount of culture
supernatant proteins was partially reduced to the wild-type level when
a functional poxA copy was introduced in the poxA
mutant. In addition, we also observed that several foreign antigens are
produced at much higher levels in poxA mutants compared to
other attenuating mutations such as cya/crp and
phoP, with the same promoter. These observations are
somewhat intriguing, since the analysis of PoxA structure did not
reveal the presence of a DNA binding motif or homology to known
transcription factors. It is therefore unlikely that the effects of a
poxA mutation could be at the transcription level. Based
upon the homology of PoxA to lysyl-tRNA synthetases, the effect of the
gene alteration is most likely at the translation level. Two codons
(AAA and AAG) are associated with lysyl-tRNA. Therefore, it is possible
that the two lysyl-tRNA synthetases, LysS and PoxA, constantly compete
for substrates with different affinities. A mutation abolishing PoxA
production would then result in a high translation of some mRNAs such
as those encoding the Sips (Ssps) and low translation of others
exemplified by PoxB (4, 5).
S. typhimurium poxA mutants were found to be attenuated for
virulence in chicks (data not shown) and mice, although they retained the ability to colonize deep tissues and induce strong humoral immune
responses. All immunized mice were protected against
Salmonella lethal challenge, suggesting that the
poxA mutation could be useful in designing live vaccines
from Salmonella and possibly from other organisms. The exact
mechanisms by which the poxA mutation is attenuated will
require more investigation. It is known, however, that the
poxA mutation has pleiotropic effects in S. typhimurium (49) including hypersensitivity to the
herbicide SM and to AKB. The mutation reduces the levels of
acetolactate synthase, an enzyme involved in the biosynthesis of
branched amino acids such as valine and isoleucine. This results in a
low turnover of AKB and hypersensitivity to both SM and AKB
(49). SM hypersensitivity due to the lack of acetolactate
synthase I has been reported for several other mutations in S. typhimurium. These include ilvB and relA
genes (14, 31) and genes encoding integration host factor,
adenylate synthase, and catabolic activator protein (15,
16). Van Dyk and LaRossa (48) reported that
poxA mutants were also hypersensitive to a wide range of
compounds of various hydrophobicities and molecular weights that
inhibit many different cellular processes. These authors suggested that
this phenotype was due to an alteration of membrane permeability. This
in turn could lead to a constitutive production and export of Sip (Ssp)
proteins in vivo, resulting in attenuation of virulence. However, the
absence of immune responses to Sips (Ssps) in mice (unpublished
results) argues against that hypothesis. Alternatively, the attenuation
of virulence could be the result of reduced growth rate of S. typhimurium poxA mutants, compared to the wild-type bacteria.
However, our recent study using other S. typhimurium
SM-hypersensitive mutants (48) does not support this theory.
Indeed, although some of these SM-hypersensitive mutants exhibit the
same reduced growth rate as the poxA strains, they retain
full virulence in mice. Therefore, it is unlikely that the attenuation
of virulence is the sole result of reduced growth rate of
poxA mutants compared to the parental strain.
PoxA controls the expression of poxB, the gene for pyruvate
oxidase structural enzyme (4). Mutations in poxA
result in a 6- to 10-fold decrease in pyruvate oxidase levels (4,
5), presumably due to an inefficient translation of PoxB mRNA.
Although the effect of the poxB mutation on virulence has
not been evaluated in Salmonella, it is noteworthy that the
PoxB homolog in Streptococcus pneumoniae has been shown to
be a virulence determinant in this organism (44). In
addition to PoxA, the expression of poxB is also regulated
by RpoS and cyclic AMP/cyclic AMP receptor protein (6), two
global regulators with established roles in Salmonella virulence. Regulation of pyruvate oxidase by RpoS, cyclic AMP/cyclic AMP receptor protein, and PoxA strongly suggests that they belong to
similar but yet different regulons.
We are currently investigating the mechanism of attenuation by
poxA mutation by several approaches. In two-dimensional
electrophoresis, several proteins are produced only in the
poxA270 strain and not in the parental or the
poxA270-complemented strains when grown in LB. Such
proteins produced only in the poxA strain could significantly contribute to the attenuation of bacterial virulence. The
identification and characterization of genes encoding these proteins
should provide a better understanding of the poxA phenotype, including the attenuation of Salmonella virulence. P. multocida poxA and S. typhimurium poxB mutants are also
being investigated for reduced virulence in our laboratory. We are also
investigating the humoral, cellular, and mucosal immune responses to
foreign antigens expressed in the S. typhimurium
poxA270
defined deletion strain, as well as to antigens in the carrier strain.
 |
ACKNOWLEDGMENTS |
We thank Virginia Miller and William Picking for providing
Yersinia and Shigella strains, respectively;
Josephine Clark-Curtiss and T. K. Ball for providing M. tuberculosis and E. rhusiopathiae genomic DNA,
respectively; Suzanna Zahn, Mark Campbell, and Jennifer Moody for
technical assistance in ELISA experiments; and Brian Morrow and
Christos Stathopoulos for technical help with T7 expression experiments. We acknowledge Donata Sizemore, Kenneth Roland, and Steve
Tinge for critical review of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Megan Health,
Inc., 3655 Vista Ave., St. Louis, MO 63110. Phone: (314) 776-1626, ext. 104. Fax: (314) 776-3317. E-mail: kkaniga{at}meganhealth.com.
Editor:
J. G. Cannon
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