Previous Article | Next Article ![]()
Infect Immun, May 1998, p. 2245-2255, Vol. 66, No. 5
Department of Microbiology, College of
Physicians and Surgeons of Columbia University, New York, New York
10032
Received 29 October 1997/Returned for modification 4 December
1997/Accepted 12 February 1998
Previously, a collection of mutants of Legionella
pneumophila that had lost the ability to multiply within and kill
human macrophages was generated by Tn903dIIlacZ
transposon mutagenesis and classified into DNA hybridization groups. A
subset of these mutants was complemented by a plasmid, pMW100,
containing a 13.5-kb genomic DNA insert. This plasmid restored the
ability to multiply within and produce cytopathic effects on human
macrophages to members of DNA hybridization groups II, IV, VI, and
XVII. A region of the genomic insert of pMW100 was sequenced, and eight
potential genes were identified and named icmE,
icmG, icmC, icmD, icmJ, icmB, icmF, and tphA. None of the
genes encode potential protein products with significant homology to
previously characterized proteins, except for tphA, whose
product has significant homology to a family of
metabolite/H+ symport proteins from gram-negative bacteria.
The positions of the Tn903dIIlacZ insertions
within the genes were determined by nucleotide sequencing. No
Tn903dIIlacZ insertions mapped to
icmG, icmJ, or tphA; therefore,
these loci were mutated to test whether they were required for
macrophage killing. Complementation analysis was used to evaluate the
roles of the potential gene products and provide information on the
organization of transcriptional units within the region. The results
indicate that all identified open reading frames except
tphA are required for killing of human macrophages.
Legionella
pneumophila is a gram-negative, broad-host-range,
facultative intracellular bacterium that is capable of infecting, multiplying within, and killing human monocytes and alveolar
macrophages (16). Inhalation of L. pneumophila
can cause either a severe pneumonia called Legionnaires' disease or a
milder, self-limiting infection called Pontiac fever (11,
19). The bacteria bind to the surface of the host cell and are
internalized by coiling phagocytosis (15). Once
internalized, the bacteria reside within a phagosomal compartment that
does not acidify and does not fuse with host lysosomes (13,
14). Mitochondria, smooth vesicles, and rough endoplasmic
reticulum are recruited to the periphery of this internal compartment,
and the bacteria are able to multiply within this
Legionella-specific phagosome (13, 31). The
bacteria destroy the host cell and are able to infect neighboring cells to initiate multiple rounds of infection.
The genes that encode and/or regulate this complex intracellular
infection pathway are not well characterized. Few L. pneumophila genes have been identified that are specifically
required for intracellular growth within and killing of human
macrophages. The mip gene encodes a 24-kDa surface protein
that has peptidyl-prolyl-cis/trans isomerase activity and is
homologous to FK506 binding proteins (10). The Mip protein
has been shown to be responsible for the efficient initiation of
intracellular infection of macrophages, and mip mutants are
less virulent than wild-type L. pneumophila but retain the
ability to replicate within and kill host cells (5, 6). The
dotA gene encodes a 1,048-amino-acid inner membrane protein
(2, 27). Strains with mutations in dotA fail to
inhibit phagosome-lysosome fusion and also fail to recruit host cell
organelles to the periphery of the Legionella-specific
phagosome (1, 2). These mutants are also unable to multiply
in macrophages. Mutations in the genes of the icmA locus
were shown to be completely defective for intracellular multiplication
and host cell killing (4). Although the genes described
above are important for L. pneumophila intracellular
infection, their precise function is not known.
Previously, a collection of mutants defective for the ability to kill
HL-60-derived macrophages was generated by
Tn903dIIlacZ mutagenesis of L. pneumophila (28). These Mak The large number of Mak Media and reagents.
L. pneumophila was grown in AYE
broth (16a) and on ABCYE agar plates (9a). For
electroporation, bacteria were grown in AYE medium lacking bovine serum
albumin. Escherichia coli was grown in Luria-Bertani (LB)
broth or on LB agar plates as described previously (24). All
reagents and chemicals were obtained from Fisher Scientific
(Springfield, N.J.). Fetal calf serum was obtained from Sigma-Aldrich
Corp. (St. Louis, Mo.). RPMI 1640 medium was purchased from JRH
Biosciences (Lenexa, Kans.). Cellgro L-glutamine (Gln) was
purchased from Mediatech Inc. (Herndon, Va.). Normal human serum (NHS)
was obtained from healthy volunteers. Bacto Agar was purchased from
Difco Laboratories, Detroit, Mich. Restriction enzymes and Vent
polymerase were supplied by New England Biolabs, Inc. (Beverly, Mass.).
Taq polymerase was supplied by Perkin-Elmer Corp. (Foster
City, Calif.). T4 polynucleotide kinase was supplied by USB Specialty
Biochemicals (Cleveland, Ohio). Antibiotics for L. pneumophila selection were used at the following concentrations: kanamycin, 50 µg/ml; streptomycin, 50 µg/ml; chloramphenicol, 5 µg/ml; gentamicin, 5 µg/ml. Antibiotics for E. coli
selection were used at the following concentrations: kanamycin, 50 µg/ml; ampicillin, 100 µg/ml; chloramphenicol, 25 µg/ml;
gentamicin, 5 µg/ml.
Bacterial strains, plasmids, bacterial mating of plasmids, and
DNA manipulations.
The bacterial strains and plasmids used in this
work are described in Tables 1 and
2, respectively. E. coli
DH5
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
The Legionella pneumophila icmGCDJBF
Genes Are Required for Killing of Human Macrophages
![]()
ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
mutants were
grouped into 16 DNA hybridization groups based on the location of the
Tn903dIIlacZ insertions on EcoRI
fragments in the mutant chromosomes. Mutants within group I were
complemented for macrophage killing and intracellular multiplication by
the previously isolated icmA/dotA locus. More recently,
mutants within group III were complemented by a region that contains
the icmT, icmS, icmR, icmQ,
icmP, and icmO genes for macrophage killing and
intracellular multiplication (30). Also, a mutant within group IX was complemented for macrophage killing by the icmE
gene (29).
DNA hybridization groups
indicated that several genes might be required to kill macrophages. To
isolate and characterize these genes, we used a plaque assay to
identify regions of DNA that would restore to the Mak
mutants the ability to replicate within and kill host cells. We
identified a locus from the wild-type L. pneumophila
chromosome that complements Mak
mutants from DNA
hybridization groups II, IV, and VI and two previously ungrouped
mutants. The nucleotide sequence of this locus was determined, and the
translated open reading frames (ORFs) were found to have no homology to
previously characterized proteins, except for one that was found to
have homology to transport proteins from gram-negative bacteria. The
positions of the Tn903dIIlacZ insertions within
the ORFs were mapped. Genetic complementation analysis was used to
determine which genes are responsible for macrophage killing and to
organize the region into potential transcriptional units.
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
and XL1-Blue were used for propagation of plasmids. Bacterial
mating of plasmids was performed as previously described
(28). Isolation of plasmid DNA, chromosomal DNA preparation,
DNA cloning techniques, and Southern analysis were performed as
previously described (21).
TABLE 1.
Bacterial strains used in this study
TABLE 2.
Plasmids used in this study
Cell culture and L. pneumophila growth within and cytotoxicity for HL-60 cells. The human leukemia cell line HL-60 was used for all tissue culture studies (8). HL-60 cells were maintained in RPMI 1640 medium supplemented with 2 mM L-glutamine (Gln) and 10% fetal calf serum at 37°C under 5% CO2-95% air. HL-60 cells were differentiated into macrophages by incubation for 48 h with 10 ng of phorbol 12-myristate 13-acetate per ml in RPMI 1640-2 mM Gln-10% NHS. HL-60-derived macrophages were washed twice with RPMI 1640-2 mM Gln and incubated with RPMI 1640-2 mM Gln-10% NHS prior to infection with L. pneumophila. The HL-60 cell plaque assay and growth assay to measure L. pneumophila multiplication within HL-60 cells were performed as previously described (22). The degree of cytotoxicity of strains of L. pneumophila for HL-60-derived macrophages was determined by measuring the level of cell survival after infection by the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay. The MTT assay was performed as described by Marra et al. (23) with 4.0 × 105 differentiated HL-60 cells infected with strains of L. pneumophila at a multiplicity of infection ranging from 10 to 106 CFU/ml. The growth assay and MTT assay for each strain were performed in separate experiments at least twice, and concordant results were obtained.
DNA sequencing and sequence analysis. The double-stranded nucleotide sequence of 11,249 bp of the approximately 13,500 bp on the genomic insert of pMW100 was determined by the dideoxy chain termination reaction of Sanger et al. with the Sequenase kit version 2.0 (USB Specialty Biochemicals, Cleveland, Ohio). Some sequence was generated by the DNA Synthesis and Sequencing Facility of the Comprehensive Cancer Center, College of Physicians and Surgeons of Columbia University. ORFs were identified by using the MacDNAsis V 2.0 program. The nucleotide sequence and amino acid sequences identified were compared to the GenBank/EMBL and SwissProt databases by using the programs BLASTX and BLASTP (18) and TFASTA. Promoter searches were performed by using the MacTargsearch program (12). Terminator sequence searches and motif searches were performed by using the Sequence Analysis Software Package, version 7 (Genetics Computer Group, Inc. [GCG]). The Psort (26) program was used to identify potential transmembrane domains and to predict the cellular location of each potential protein product. Tn903dIIlacZ fusions into the L. pneumophila genomic DNA were determined by using synthetic primers corresponding to the 5' lacZ coding region from nucleotides 56 to 41 (5'-CCCAGTCACGACGTTG-3') or the 3' Kmr end from nucleotides 4286 to 4305 (5'-CCAACCGCTGTTTGGTCTGC-3') of Tn903dIIlacZ (9).
Determination of the Tn903dIIlacZ
insertion sites.
The majority of
Tn903dIIlacZ insertions in the Mak
L. pneumophila strains were identified by inverse PCR.
Genomic DNA was isolated as previously described (21) and
digested to completion with the restriction enzymes DraI and
ScaI. The restriction digests were precipitated with
ethanol. The DNA concentration was determined, and the restriction
digest was ligated with T4 DNA ligase overnight at 16°C at a DNA
concentration of <2.0 µg/ml to favor the formation of monomeric
circles. The ligation reaction was stopped by heating to 68°C for 15 min and isolated by precipitation with ethanol. The entire ligation mix
was added to a PCR mixture containing 300 ng each of the
lacZ primer and Kmr primer corresponding to the
5' and 3' ends of the Tn903dIIlacZ, respectively,
200 µM each deoxynucleoside triphosphate, PCR buffer lacking
MgCl2, 3 mM MgCl2, and 2.5 U of Taq
polymerase. The inverse PCR products were amplified at 94°C for 4 min, followed by 35 cycles of 94°C for 45 s, 55°C for 45 s, and 72°C for 2 min, and ending with 72°C for 7 min. The inverse
PCR products were visualized on a 0.7% agarose gel and cloned into the
PCR cloning vector pCR2.1 (Invitrogen Corp.). The T7 or reverse primers
corresponding to the polylinker cloning site were used to sequence the
inverse PCR products to identify the
Tn903dIIlacZ-Legionella DNA fusions.
, and the
transformation mixture was plated on LB agar plates containing
kanamycin (Tn903dIIlacZ), chloramphenicol
(pMMB207), and
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (X-Gal)
(Tn903dIIlacZ). The plasmid DNA was digested with
EcoRI to verify the insert and then sequenced with the
lacZ primer to identify the
Tn903dIIlacZ location. The plasmids pAB13
(LELA1012) and pAB14 (LELA1566) were sequenced with the Km primer to
identify the Tn903dIIlacZ-Legionella
DNA fusions (28).
Construction of plasmids for complementation.
Plasmid
pMMB207
b::Gm was constructed by cloning the 2,118-bp
HincII Gmr fragment from pLB41 into pMMB207
b
digested with DraI. Plasmid pMW560 (containing the
icmB gene) was constructed by first subcloning the
HindIII 3,257-bp fragment (nucleotides 3344 to 6601)
from pMW100 to pBSK KS+ to form pMW525. Plasmid pMW525 was digested with HincII (which cuts at nucleotide 5333) and
KpnI (polylinker), and the 1,512-bp
HincII-KpnI fragment from pMW100 (nucleotides 5333 to 6845) was cloned to create pMW528 and to complete the icmB gene. The 3,501-bp KpnI-XbaI
fragment from pMW528 was subcloned to pBC SK+ digested with
KpnI and XbaI to generate pMW560. Plasmid pMW604
(icmGCD) was constructed by subcloning the EcoRI
(polylinker)-KpnI (which cuts at nucleotide 2992) 2,540-bp
fragment from pMW582 (described below) to pMMB207 digested with
EcoRI and KpnI. Plasmids pMW680 (icmJ
in the opposite direction to PlacUV5) and pMW681
(icmJ in the same direction to
PlacUV5) were constructed by ligating the
1,864-bp PstI fragment (nucleotides 2429 to 4293) from
pMW100 to pBC SK+ digested with PstI. Plasmid pMW790
(icmJ in the opposite direction to Ptac) was
constructed by ligating the same 1,864-bp PstI fragment into
pMM207
b::Gm digested with PstI. Plasmids pMW728
and pMW730 were constructed in two steps. First, a PCR under the
amplification conditions described above amplified an 897-bp fragment
containing the entire icmC gene from the L. pneumophila chromosome. The primers corresponded to nucleotides 1505 to 1520 (5'-GTGTCTCGGCCAATAG-3') and 2402 to 2387 (5'-GCCAAACAAGCTGCGC-3') of pMW100. The isolated PCR product
was subcloned into pCR2.1 to generate pMW564. The PCR product was
sequenced to ensure that no errors occurred in the PCR amplification.
pMW564 was digested with EcoRI, and the 897-bp insert was
subcloned to pMMB207
b digested with EcoRI to generate
pMW728 (icmC in the same direction to Ptac) and
pMW730 (icmC in the opposite direction to Ptac).
Plasmids pMW734 (icmD in the same direction to
Ptac) and pMW736 (icmD in the opposite direction
to Ptac) were constructed as described above. The primers
corresponded to nucleotides 2181 to 2196 (5'-GCGCGTTCCGCGTCGC-3') and 2992 to 2977 (5'-CGCCAGGAACCTGGTG-3') of pMW100.
The isolated 811-bp PCR product was subcloned into pCR2.1 to generate
pMW565 and then into pMMB207
b digested with EcoRI to
generate pMW734 and pMW736. The plasmids pMW741 (icmG in the
same direction to Ptac) and pMW743 (icmG in the
opposite direction to Ptac) were generated as described
above with primers corresponding to nucleotides 563 to 579 (5'-CACGGCAAGAACAGCCC-3') and 2058 to 2043 (5'-CACCTCCTGAGTAGGC-3') of the pMW100 sequence. The
isolated 1,495-bp PCR product was subcloned into pCR2.1 to generate
pMW566 and then into pMMB207
b digested with EcoRI to
generate pMW741 and pMW743.
Construction of plasmids for allelic exchange.
Deletions
were generated as described by Imai et al. (17). First,
pMW424 was constructed by cloning the 2,892-bp HindIII fragment from pMW100 (nucleotides 452 to 3344) into pBSK KS+ digested with HindIII. Plasmid pMW424 was amplified in a PCR with
using Vent polymerase, an annealing temperature of 72°C, and
amplification at 75°C for 6 min. The primers used were generated with
half of a KpnI site (5'-ACC-3') at each 5' end to generate a
full KpnI site after self-ligation. The primers corresponded
to nucleotides 2992 to 2973 (5'-ACCCGCCAGGAACCTGGTGAAGC-3')
and 3210 to 3229 (5'-ACCGGTGGTTATGGTGGAGGTAC-3') of
pMW100. The PCR products were visualized on a 0.7%
low-melting-temperature agarose gel, and the expected 5,641-bp product
was isolated and self ligated in a reaction mixture that contained 1 U
of T4 polynucleotide kinase. The ligation was transformed to DH5
,
and the transformants were screened for the presence of the
KpnI site generated by PCR. The resulting plasmid, pMW582,
contained the complete ORFs of icmGCD. The 2,540-bp
HindIII-KpnI insert from pMW582 was subcloned
to pUC18 digested with HindIII and KpnI to
generate pMW584. To delete the icmG gene, the exact
procedure as described above was performed on pMW584 with the following
revisions. The primers used contained one half of a SalI
site (5'-GAC-3') at each 5' end and corresponded to nucleotides 994 to
976 (5'-GACCCGATTCACCAGCCTGATCC-3') and 1505 to 1527 (5'-GACGTGTCTCGGCCAATAGTTCAAGC-3') of pMW100. The 4,703-bp
PCR product was isolated and ligated, screening for the presence of the
SalI site generated. The icmG deletion plasmid was named pMW591. To delete the icmC gene, pMW584 was used
in the procedure described above. Each primer contained half of a SalI site and corresponded to nucleotides 1830 to 1811 (5'-GACGCCTTTGAACAGGCTCCAAC-3') and 2181 to 2201 (5'-GACGCGCGTTCCGCGTCGCAGGGG-3') of pMW100. The 4,862-bp PCR
product was isolated and ligated, and the icmC deletion plasmid was named pMW593. To delete the icmJ gene, a plasmid
was constructed by cloning the 1,864-bp PstI fragment from
pMW100 (nucleotides 2429 to 4293) in pBSK KS+ digested with
PstI. This plasmid, pMW420, was used in a PCR as described
above. Each primer contained half of a SalI site and
corresponded to nucleotides 2992 to 2973 (5'-GACCGCCAGGAACCTGGTGAAGC-3') and 3526 to 3546 (5'-GACGGGCTGCCAGTGCTTTAGAAG-3') of pMW100. The 4,298-bp
product was isolated and ligated, and the icmJ deletion
plasmid was named pMW587. The 1,331-bp
HindIII-BamHI insert of pMW587 was subcloned to pUC18 digested with HindIII and BamHI to
generate pMW602. To construct the tphA deletion, the
2,004-bp PstI-BamHI fragment of pMW100
(nucleotides 6369 to 8373) was cloned to pUC18 digested with
PstI and BamHI to generate pMW576. Plasmid pMW576
was used in the deletion PCR as described above; each primer contained half of a SalI site and corresponded to nucleotides 6861 to
6839 (5'-GACGGCTCCGGCTTGGTACCTTTTCC-3') and 7936 to
7956 (5'-GACGG AGCAAAACTGGCATAGAGC-3') of pMW100.
The 3,622-bp product was isolated and ligated, and the
tphA deletion plasmid was named pMW589. Plasmids pMW591
(
icmG), pMW593 (
icmC), pMW602
(
icmJ), and pMW589 (
tphA) were digested
with SalI, and a Kmr cassette (Pharmacia
Biotech) was cloned into the site. The resulting plasmids, pMW598
(
icmG::Km), pMW600
(
icmC::Km), pMW606
(
icmJ::Km), and pMW596
(
tphA::Km), were digested with
PvuII, and the Kmr fragments were ligated to
pLAW344 digested with EcoRV to generate pMW618, pMW620,
pMW622, and pMW616, respectively. These plasmids were used for allelic
exchange. Allelic exchange was performed as previously described
(32).
Nucleotide sequence accession number. Sequence data of the partial icmE gene and the complete icmGCDJB, tphA, and icmF genes was assigned accession no. Y14948 in the EMBL nucleotide sequence database.
| |
RESULTS |
|---|
|
|
|---|
Isolation of a complementing Mak+ library clone.
To complement the macrophage-killing defect of the Mak
mutants, a library of wild-type L. pneumophila DNA was
constructed in the IncQ cloning vector pMMB207. pMMB207 contains an
RSF1010 origin of replication and is stably maintained in L. pneumophila (25). The library was electroporated into
one mutant of group II, LELA3896. The pool of transformed bacteria was
then tested in a plaque assay on HL-60 cells. The plaque assay selects
for bacteria that are able to infect a macrophage monolayer, multiply intracellularly, kill the host cell, and infect neighboring cells to
continue multiple rounds of infection. This technique is valuable since
it selects for the few Mak+ transformants within the large
pool of Mak
bacteria. Most Mak
mutants do
not form plaques at a detectable frequency, and strain LELA3896
containing the vector pMMB207 was unable to form plaques (data not
shown). One plaque was isolated from the library pool in LELA3896, and
the Mak+ bacteria were rescued, purified from the plaque,
and retested in a modified plaque assay. In this modified assay, the
bacteria were inoculated directly through the agarose and into the
macrophage monolayer with a sterile toothpick. The purified
transformants retained the ability to form plaques surrounding the site
of inoculation in this assay (data not shown).
mutant strain. The transformants were tested
in the modified plaque assay and were found to be able to form plaques.
To find if a mutation occurred in the LELA3896 chromosome that
restored the macrophage-killing phenotype in the original isolate, the complemented bacteria were rescued from the macrophage
monolayer and isolated on ABCYE plates lacking
chloramphenicol. The bacteria were then passed two more times on ABCYE
plates to cure the library clone from the bacteria. These
Cms cured bacteria were tested in the modified plaque assay
and were unable to form plaques. Therefore, the Mak+
phenotype is linked to the genomic insert on pMW100 and is not due to a
reversion or recombination event in the chromosome of LELA3896.
Growth within and killing of differentiated HL-60 cells.
To
determine the capacity of pMW100 to complement LELA3896 for
intracellular multiplication, growth assays were performed with HL-60
cells. As shown in Fig. 1A, the wild-type
strain JR32 multiplied >100-fold by the fourth day following
infection. Strain JR32 containing the vector pMMB207 or plasmid pMW100
showed the same pattern of growth as JR32 (data not shown). The
Mak
mutant LELA3896 did not multiply detectably. LELA3896
carrying the vector pMMB207 was also unable to multiply within HL-60
cells. LELA3896 containing plasmid pMW100 multiplied >100-fold by the fourth day following infection, comparable to the wild-type strain. Therefore, the genomic information on pMW100 was sufficient to enable
the Mak
mutant LELA3896 to survive and multiply within
HL-60 cells.
|
Plasmid pMW100 complements members of DNA hybridization groups II,
IV, and VI.
To test if other Mak
mutants were
complemented by pMW100, the plasmid was transferred into each of the 55 Mak
LELA strains by bacterial mating. Each
pMW100-containing mutant was tested in the modified plaque assay on
HL-60 cells. All the mutants in Mak
group II were
restored for the ability to produce plaques on HL-60 cells except for
strains LELA1984 and LELA2517. All members of group IV and group VI
were also complemented by pMW100. Every member of DNA hybridization
groups I, III, VII, VIII, IX, X, and XII was not complemented for its
Mak
defect when transformed with pMW100 (data not shown).
The mutants representing DNA hybridization groups XI, XIII, XIV, XV,
and XVI and the six ungrouped mutants were unable to be tested by this assay. These strains retain some ability to kill macrophages, and this
residual activity is sufficient to enable the mutants alone to form
plaques on macrophage monolayers (data not shown).
Restriction map of pMW100 and Mak
Tn903dIIlacZ insertions on pMW100.
An
EcoRI restriction map of pMW100 is shown in Fig.
2A. Four EcoRI fragments were
found: 5.4, 0.6, 2.0, and 5.5 kb. The Ptac promoter of the
vector pMMB207 directs transcription to the left into the 5.5-kb
EcoRI fragment. Southern hybridization analysis showed that
these four EcoRI fragments were contiguous in the wild-type
L. pneumophila chromosome (data not shown).
|
mutants contained
Tn903dIIlacZ insertions in the genomic insert
represented by pMW100, the Mak
mutant genomes were
digested with EcoRI and probed with each pMW100
EcoRI fragment in a Southern analysis (data not shown). A
Mak
mutant that contained a
Tn903dIIlacZ insertion within the genomic EcoRI fragment used as a probe contained a hybridizing band
4.4 kb larger (the size of the Tn903dIIlacZ
insertion) than wild-type genomic DNA. As shown in Fig. 2A, every
mutant in Mak
groups II, VI, and IV contained
Tn903dIIlacZ insertions in pMW100 EcoRI fragments of 5.4, 0.6, and 2.0 kb, respectively.
Ungrouped mutants LELA1275 and LELA1718 contained insertions in the
5.5-kb EcoRI fragment, creating a new Mak
DNA
hybridization group, XVII.
Since the mutants in Mak
group XVII were able to form
visible plaques on HL-60 cell monolayers, a cytotoxicity assay was
performed on these two mutants transformed with pMW100 to see if the
plasmid complemented the strains for killing macrophages. As shown in Fig. 3, strains LELA1275 and LELA1718
containing the vector pMMB207 had a partial or Mak±
phenotype. Plasmid pMW100 restored macrophage killing to strain LELA1275 approximately fourfold. However, 103-fold more
bacteria were required to produce a similar level of cytopathic effects
to that produced by the wild-type strain. LELA1718 containing pMW100
was restored for killing approximately 10-fold to a level similar to
that for the wild-type strain JR32. Therefore, plasmid pMW100 partially
complemented these two mutants for the ability to kill macrophages.
|
Sequence analysis of the genomic insert on pMW100 and identification of potential ORFs. The double-stranded nucleotide sequence of 11,249 bp of the genomic insert present on pMW100 was determined. A total of eight potential ORFs were identified. As described below, seven of the ORFs were shown to be required for macrophage killing and were named icmE, icmG, icmC, icmD, icmJ, icmB, and icmF (for intracellular multiplication). Only the 3' end of the icmE ORF was present on pMW100; therefore, icmE was not characterized further. The eighth ORF, tphA, was shown to be dispensable for killing macrophages (see below) and was named according to its homology to transport protein homologs. The location and approximate size of each ORF are shown in Fig. 2B. Ribosome binding sites were identified, and these precede icmC, icmD, icmJ, icmB, and icmF at an appropriate distance from the putative initiation codons. The icmG and tphA genes did not appear to contain recognizable ribosome binding sites. The MacTargsearch program did not identify E. coli-like consensus promoter sequences upstream of any of the ORFs (12). One possible reason is that L. pneumophila chromosomal DNA has a low G+C content (39%) compared to E. coli (51%). A conserved sequence was found in the upstream regions of the icmB and icmF genes that might serve as a promoter or a recognition site for a transcription factor (30). A GCG search to identify transcriptional termination sequences identified a rho-independent termination sequence 47 bp downstream of the termination codon of icmD characterized by a GC-rich inverted repeat followed by a run of five T's. Approximately 12 bp 5' to this termination sequence, a 10-bp inverted repeat was found. The combination of this inverted repeat and the rho-independent termination sequence may indicate a termination of transcription after icmD.
Each ORF was analyzed by a variety of techniques, and the results are summarized in Table 3. To determine if the potential products of the identified ORFs have homology to previously identified proteins, the GenBank/EMBL and SwissProt databases were searched. All ORFs, except for tphA, show no homology to previously described genes or proteins at the nucleotide and amino acid levels. TphA contains 30% identity over 424 amino acids to the ProP protein of E. coli encoding the (proline/betaine:H+/Na+) symport protein (28a). Motif searches of each protein product identified a consensus ATP/GTP binding site motif A in the products of the icmB and icmF genes. The Psort program predicted that all the ORF products are located in the bacterial inner membrane and identified a number of potential transmembrane domains within each amino acid sequence (26). The hydropathic profile of each ORF product is shown on Kyte-Doolittle plots (20) in Fig. 4. The Psort program also located an uncleavable N-terminal signal sequence in icmC. The icmD gene product appears to have an N-terminal signal sequence with predicted cleavage after the alanine at amino acid 33, even though the Psort program predicted an inner membrane location for this protein.
|
|
Mapping of the Tn903dIIlacZ insertions
within the identified ORFs.
A variety of techniques was used to
identify the precise location of each
Tn903dIIlacZ insertion. Previously, the
EcoRI fragments containing the
Tn903dIIlacZ fusions from a number of the
Mak
mutant chromosomes were cloned. To identify the
locations of additional Tn903dIIlacZ insertions,
the genomic EcoRI fragments containing the
Tn903dIIlacZ insertions from a number of
Mak
mutants were subcloned on EcoRI fragments
into the vector pMMB207 to generate plasmids pMW150, pMW152, pMW318,
and pMW320. These plasmids and the previously constructed plasmids
pAB13 and pAB14 were sequenced to identify the fusion junctions to the
Tn903dIIlacZ insertions. Inverse PCR was used to
identify and confirm the remaining Tn903dIIlacZ
insertion sites (see Materials and Methods). The insertions in LELA2947
(group VI) and LELA 3150 and LELA3323 (group IV) could not be cloned
from their respective chromosomes and were not amplified by inverse
PCR. Therefore, direct PCR was used to amplify a genomic fragment
containing the region flanking the Tn903dIIlacZ
insertions. The majority of Tn903dIIlacZ
insertions were mapped in icmB; therefore, PCRs were
performed with the Km primer of the Tn903dIIlacZ
and primers downstream of the predicted sites of insertions in the
icmB gene (see Materials and Methods). A genomic fragment of
the predicted size was amplified for all three mutant strains (data not
shown), and the PCR products were cloned in the pCR2.1 vector and
sequenced as described in Materials and Methods. Figure 2B summarizes
the results of the map locations of the
Tn903dIIlacZ insertions within the ORFs
identified. No insertions were found in icmG,
icmJ, and tphA.
Complementation analysis of icmB and icmJ. To examine the role of icmB in macrophage killing, the entire gene was subcloned onto pBC SK+ in the same direction as the vector PlacUV5. This plasmid, pMW560, was used to transform four different icmB mutants (LELA1012, LELA1223, LELA3393, and LELA3896), and the transformants were tested for macrophage killing by the cytotoxicity assay. As shown in Fig. 5, the plasmids pMW560 and pMW100 complemented each icmB mutant strain to a cytotoxicity level similar to that of wild-type bacteria. However, strain LELA1012 required approximately 100-fold more bacteria to produce a similar degree of cytopathic effects to that of JR32. The icmB gene is therefore expressed from the pMW560 plasmid, and mutations in icmB could be complemented. These results confirm that icmB plays a role in macrophage killing.
|
b was
completely unable to kill macrophages. To test if icmJ
itself plays a role in macrophage killing or if the icmJ mutation is polar on expression of icmB, complementation
tests were performed. Strain MW656 was transformed with plasmid pMW560 (icmB), and this strain was completely unable to kill
macrophages. Therefore, the icmJ gene is required for
macrophage killing and polarity alone on expression of the
icmB gene is not sufficient to produce the Mak
phenotype observed. Plasmid pMW100 (all ORFs) restored the ability to
kill macrophages to the icmJ mutant at a level comparable to the wild-type strain JR32. Plasmids pMW680 and pMW681 (icmJ
in the opposite and same orientation with respect to
PlacUV5, respectively) partially complemented
this mutant. Approximately 103-fold more bacteria were
required to observe the same level of cytotoxicity as that of JR32.
These results confirm that icmJ plays a role in macrophage
killing. The partial complementation observed may have been due to
polarity on expression of the downstream icmB gene. To test
this possibility, plasmids pMW560 (icmB) and pMW790
(icmJ in the opposite orientation to Ptac) were
both transformed into the icmJ mutant strain MW656, and this
strain exhibited a wild-type level of macrophage killing. These results
are consistent with the idea that the icmJ::Km
mutant decreases the expression of icmB and suggest that
icmJ and icmB may form a transcriptional unit.
|
Complementation analysis of icmD, icmC, and
icmG.
A potential transcriptional terminator was identified
downstream from the termination codon of icmD. To test if
transcription terminates after the icmD gene or if
icmJ and icmB are encoded in the same transcript,
genetic complementation was performed to determine whether mutations in
icmD decrease the expression of icmJ and
icmB. As shown in Fig. 6B, the icmD mutant strain LELA1205 containing the vector pMMB207
b was completely defective for killing macrophages. The icmD mutant was complemented
for macrophage killing to a level similar to wild-type bacteria by plasmids pMW100 (all ORFs), pMW734 (icmD same orientation to
Ptac), and pMW736 (icmD opposite orientation to
Ptac). These results confirmed that icmD is
essential for macrophage killing and suggest that the insertion in
icmD is not polar on expression of the downstream genes
icmJ and icmB.
b was completely defective for the
ability to kill macrophages. To determine if icmC plays a
role in macrophage killing or if the icmC mutation is polar
on expression of icmD, strain MW645 was transformed with
plasmid pMW734 (icmD in the same orientation to
Ptac). This strain was unable to kill macrophages.
Therefore, the icmC gene is required for macrophage
killing, and polarity on expression of the icmD gene alone
is not sufficient to produce the macrophage-killing defect observed.
Strain MW645 was complemented equally by pMW100 (all ORFs) and pMW604
(icmGCD) to a similar level of cytopathic effects to that of
the wild-type strain. However, icmC in the same (pMW728) and
opposite orientation (pMW730) with respect to Ptac on the
vector showed a partial complementation phenotype. High MOIs were
required for macrophage killing. The icmC mutation is
probably polar on expression of icmD because a plasmid
containing icmGCD showed better complementation of this mutant than did plasmids containing icmC only. Therefore,
icmC may be part of an operon with icmD.
No Tn903dIIlacZ insertions were mapped to
icmG. To determine if icmG is required for
macrophage killing, an icmG mutant was constructed by
allelic exchange. The complementation analysis for this mutant is shown
in Fig. 6D. The icmG mutant strain MW635 containing the
vector pMMB207
b showed a partial macrophage-killing defect. The
mutant required 100-fold more bacteria to kill the macrophage monolayer
as efficiently as the wild-type strain. The partial Mak
phenotype might be due to the disruption of icmG and/or
polarity on the expression of icmC and icmD.
Plasmids pMW100 (all ORFs), pMW741 (icmG in the same
orientation to Ptac), and pMW743 (icmG in the
opposite orientation to Ptac) all complemented the
icmG mutant strain equally, similar to the wild-type level
of macrophage killing. Therefore, the expression of downstream genes is
probably not affected by the icmG gene disruption and
icmG does play a role in macrophage killing but is not
absolutely required.
Complementation analysis of icmF and tphA. As described above, icmF mutants were complemented by pMW100; however, LELA1275 was only partially complemented. The direction of transcription on pMW100 from the Ptac promoter is the same as for icmF, so icmF RNA is probably expressed from Ptac. Addition of 1 mM IPTG to the ABCYE agar plates during growth of the LELA1275 strain or to the RPMI 1640 tissue culture media in the cytotoxicity assays did not increase the level of complementation (data not shown). One possible explanation for the lack of complete complementation is that the transposon insertion in this strain is polar on the expression of tphA and that the tphA protein product is required for macrophage killing. To test this possibility, a tphA::Km mutant was constructed by allelic exchange. The mutant strain specifically lacking TphA killed macrophages in a manner identical to the wild-type strain (data not shown). Therefore, even if the insertions in icmF are polar on expression of the tphA protein product, this polarity has no consequence on macrophage killing. The exact reason why LELA1275 cannot be complemented to a wild-type level is not completely understood. However, a second icmF mutant, LELA1718, is completely complemented, confirming that icmF plays a role in host cell killing.
| |
DISCUSSION |
|---|
|
|
|---|
L. pneumophila belongs in a class of intracellular
pathogens that subvert host cell defenses to form a specialized
phagosome. The mechanisms that control phagosome formation, trafficking
of the phagosome within the host cell, and subsequent bacterial
replication are not well understood. To identify genes that allow
L. pneumophila to establish its specialized replicative
niche, Tn903dIIlacZ mutagenesis was performed on
the L. pneumophila chromosome to isolate Mak
mutants that are unable to multiply within and kill human macrophages.
In this report, we describe a locus isolated from a wild-type L. pneumophila library that is able to complement a subset of the
Mak
mutants for their macrophage-killing defect. Genetic
complementation analysis of the identified ORFs was used to identify
which genes play a role in macrophage killing. This analysis showed
that icmC, icmD, icmJ, and
icmB are completely required to kill macrophages and that
icmG and icmF are partially required. The gene
products of icmG and icmF may play accessory
roles that are somewhat dispensable for host cell killing. The
tphA gene was shown to be completely dispensable for
macrophage killing. Either the function of the tphA gene
product is not required for killing of the host cell, or another family
member of the metabolite/H+ symport proteins may compensate
for the defect in the tphA gene. Mutations in all the
icm genes were complemented for macrophage killing by
various plasmids, and the complementation was to a level similar to
that for the wild-type strain JR32. For two mutants, the
complementation was 100-fold (LELA1012) and 1,000-fold (LELA1275) less
than for the wild-type strain. The chromosomal mutations within the
icm genes in these strains may be partially dominant.
The identified icm genes certainly play a role in host cell killing, but the exact function of the icm gene products is not known. The icm genes encode potential protein products that have no homology to any previously identified proteins. All the potential icm gene products described in this report are predicted to be associated with the bacterial inner membrane. Recent evidence has shown that DotA, an L. pneumophila protein required for host cell killing, is also a cytoplasmic membrane protein (27). When the Psort analysis and the Kyte-Doolittle plots of the predicted icm gene products are compared, the assignment of the locations of some of the proteins is shown to be ambiguous. For example, icmB is predicted to be associated with the bacterial inner membrane. However, the calculated Psort score of 0.111 is quite low. The Kyte-Doolittle plot clearly shows characteristics of a cytoplasmic protein with no dramatic hydrophobic regions identified in the protein. Further analysis of the icm gene products is required to determine the exact location of the proteins within the bacterial cell.
Recently, the icm genes described in this study were shown to be contiguous to other icm genes required for the killing of human macrophages by the L. pneumophila bacteria. The icmTSRQPO-lphA-icmMLKE genes were shown to be linked to the icmGCDJB-tphA-icmF genes (29, 30). Therefore, the locus described in this study is part of a 22-kb region of the L. pneumophila chromosome that contains a number of contiguous genes, most of which have been shown to play a role in intracellular infection by the bacteria. Most of the icm genes in this 22-kb region are predicted to be located in the bacterial inner membrane, periplasm, and outer membrane. The majority of these icm gene products do not contain homology to previously identified proteins. Four icm genes (icmP, icmO, icmL, and icmE) encode protein products that showed significant homology to plasmid genes involved in conjugation.
Since the identified genes are clustered and mutations within these contiguous genes show similar killing phenotypes, it is possible that the icm proteins associate with one another or form a multiprotein membrane complex that may play a role in the establishment of infection in the host cell. A mutation in any one of the icm genes may disrupt the interaction between the Icm proteins and have a detrimental effect on complex formation and subsequent activity. It is possible that such a complex imports material such as nutrients for bacterial multiplication. By-products of metabolism may also pass into or out of the cell through this complex. Also, the Icm proteins may be used to export material into the replicative phagosome to modify the phagosomal membrane so that fusion to lysosomes does not occur.
A few of the icm genes have been studied more closely to examine their role in inhibition of phagosome-lysosome fusion. Strains containing Tn903dIIlacZ insertions in dotA and icmX (4), icmR (30), icmE (29), and icmB (see above) were tested for their ability to prevent phagosome-lysosome fusion. In contrast to the phagosomes containing wild-type bacteria, 70 to 80% of phagosomes containing the mutant bacteria fused with host cell lysosomes as quickly as 30 min after infection. These observations are similar to those made with heat-killed bacteria (32a). However, it is difficult to differentiate whether mutations in these genes result in a direct defect in inhibition of phagosome-lysosome fusion or if some other defect in an earlier step of the infection pathway leading to phagosome-lysosome fusion. Such early steps may include the proper sorting of plasma membrane proteins (7) or signaling events during phagosome formation by the bacteria. Further characterization of the function of the icm gene products will enhance our understanding of the mechanisms by which intracellular organisms establish a productive infection and parasitize their host cell.
| |
ACKNOWLEDGMENTS |
|---|
We thank Gil Segal and Laura Hales for critical analysis of the manuscript. We thank Milton H. Saier, Jr., and Lawrence Wiater for sharing unpublished results. We are grateful to Steven D. Goodman for the MacTargsearch program. We are grateful to Mrs. Carmen Rodriguez for excellent technical assistance during this work.
This work is supported by NIH grant AI23549.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Department of Microbiology, College of Physicians and Surgeons of Columbia University, 701 West 168th St., New York, NY 10032. Phone: (212) 305-6913. Fax: (212) 305-1468. E-mail: shuman{at}cuccfa.ccc.columbia.edu.
Editor: P. J. Sansonetti
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Berger, K. H., and R. R. Isberg. 1993. Two distinct defects in intracellular growth complemented by a single genetic locus in Legionella pneumophila. Mol. Microbiol. 7:7-19[Medline]. |
| 2. | Berger, K. H., J. J. Merriam, and R. R. Isberg. 1994. Altered intracellular targeting properties associated with mutations in the Legionella dotA gene. Mol. Microbiol. 14:809-822[Medline]. |
| 3. |
Borck, K.,
J. S. Beggs,
W. J. Brammar,
A. S. Hopkins, and N. E. Murry.
1976.
The construction in vitro of transducing derivatives of phage .
Mol. Gen. Genet.
146:199-207[Medline].
|
| 4. | Brand, B. C., A. B. Sadosky, and H. A. Shuman. 1994. The Legionella pneumophila icm locus: a set of genes required for intracellular multiplication in human macrophages. Mol. Microbiol. 14:797-808[Medline]. |
| 5. | Cianciotto, N. P., B. I. Eisenstein, C. H. Mody, and N. C. Engleberg. 1990. A mutation in the mip gene results in an attenuation of Legionella pneumophila virulence. J. Infect. Dis. 162:121-126[Medline]. |
| 6. |
Cianciotto, N. P.,
B. I. Eisenstein,
C. H. Mody,
G. B. Toews, and N. C. Engleberg.
1989.
A Legionella pneumophila gene encoding a species-specific surface protein potentiates the initiation of intracellular infection.
Infect. Immun.
57:1255-1262 |
| 7. |
Clemens, D. L., and M. A. Horwitz.
1992.
Membrane sorting during phagocytosis: exclusion of MHC molecules but not complement receptor CR3 during conventional and coiling phagocytosis.
J. Exp. Med.
175:1317-1326 |
| 8. |
Collins, S. J.,
F. W. Ruscetti,
R. E. Gallagher, and R. C. Gallo.
1978.
Terminal differentiation of human promyelocytic leukemia cells induced by dimethyl sulfoxide and other polar compounds.
Proc. Natl. Acad. Sci. USA
75:2458-2462 |
| 9. | Derbyshire, K. M. 1995. An IS903-based vector for transposon mutagenesis and the isolation of gene fusions. Gene 165:143-144[Medline]. |
| 9a. |
Feeley, J. C.,
R. J. Gibson,
G. W. Gorman,
N. C. Langford,
J. K. Rasheed,
D. C. Mackel, and W. B. Baine.
1979.
Charcoal-yeast extract agar: primary isolation medium for Legionella pneumophila.
J. Clin. Microbiol.
10:437-441 |
| 10. | Fischer, G., H. Bang, B. Ludwig, K. Mann, and J. Hacker. 1992. Mip protein of Legionella pneumophila exhibits peptidyl-prolyl-cis/trans isomerase (PPIase) activity. Mol. Microbiol. 6:1375-1383[Medline]. |
| 11. | Fraser, D. W., T. R. Tsai, W. Orenstin, W. E. Parken, H. J. Beechan, R. G. Sharrar, J. Harris, G. F. Mallison, S. M. Martin, J. E. McDade, C. C. Shepard, and P. S. Brachman. 1977. Legionnaires' disease: description of an epidemic of pneumonia. N. Engl. J. Med. 297:1189-1197[Abstract]. |
| 12. |
Goodrich, J. A.,
M. L. Schwartz, and W. R. McClure.
1990.
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF).
Nucleic Acids Res.
18:4993-5000 |
| 13. |
Horwitz, M. A.
1983.
Formation of a novel phagosome by the Legionnaires' disease bacterium (Legionella pneumophila) in human monocytes.
J. Exp. Med.
158:1319-1331 |
| 14. |
Horwitz, M. A.
1983.
The Legionnaires' disease bacterium (Legionella pneumophila) inhibits phagosome-lysosome fusion in human monocytes.
J. Exp. Med.
158:2108-2126 |
| 15. | Horwitz, M. A. 1984. Phagocytosis of the Legionnaires' disease bacterium (Legionella pneumophila) occurs by a novel mechanism: engulfment within a pseudopod coil. Cell. 36:27-33[Medline]. |
| 16. | Horwitz, M. A., and S. C. Silverstein. 1980. Legionnaires' disease bacterium (Legionella pneumophila) multiplies intracellularly in human monocytes. J. Clin. Invest. 60:441-450. |
| 16a. | Horwitz, M. A., and S. C. Silverstein. 1983. Intracellular multiplication of Legionnaires' disease bacteria (Legionella pneumophila) in human monocytes is reversibly inhibited by erythromycin and rifampin. J. Clin. Invest. 71:15-26. |
| 17. |
Imai, Y.,
Y. Matsushima,
T. Sugimura, and M. Terada.
1991.
A simple and rapid method for generating a deletion by PCR.
Nucleic Acids Res.
19:2785 |
| 18. |
Karlin, S., and S. F. Altschul.
1990.
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
Proc. Natl. Acad. Sci. USA
87:2264-2268 |
| 19. |
Kaufmann, A. F.,
J. E. McDade,
C. M. Patton,
J. V. Bennett,
P. Skaliy,
J. C. Feeley,
D. C. Anderson,
M. E. Potter,
V. F. Newhouse,
M. B. Gregg, and P. S. Brachman.
1981.
Pontiac fever: isolation of the etiologic agent (Legionella pneumophila) and demonstration of its mode of transmission.
Am. J. Epidemiol.
114:337-347 |
| 20. | Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132[Medline]. |
| 21. | Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. In Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. |
| 22. |
Marra, A.,
S. J. Blander,
M. A. Horwitz, and H. A. Shuman.
1992.
Identification of a Legionella pneumophila locus required for intracellular multiplication in human macrophages.
Proc. Natl. Acad. Sci. USA
89:9607-9611 |
| 23. | Marra, A., M. A. Horwitz, and H. A. Shuman. 1990. The HL-60 model for the interaction of human macrophages with the Legionnaires' disease bacterium. J. Immunol. 144:2738-2744[Abstract]. |
| 24. | Miller, J. H. 1972. In Experiments in molecular biology. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. |
| 25. | Morales, V. M., A. Backman, and M. Bagdasarian. 1991. A series of wide-host-range low-copy-number vectors that allow direct screening for recombinants. Gene 97:39-47[Medline]. |
| 26. | Nakai, K., and M. Kanehisa. 1991. Expert system for prediction of protein localization sites in gram negative bacteria. Protein Struct. Funct. Genet. 11:95-110. |
| 27. | Roy, C. R., and R. R. Isberg. 1997. Topology of Legionella pneumophila DotA: an inner membrane protein required for replication in macrophages. Infect. Immun. 65:571-578[Abstract]. |
| 28. |
Sadosky, A. B.,
L. A. Wiater, and H. A. Shuman.
1993.
Identification of Legionella pneumophila genes required for growth within and killing of human macrophages.
Infect. Immun.
61:5361-5373 |
| 28a. | Saier, M. H., Jr. Personal communication. |
| 29. |
Segal, G.,
M. Purcell, and H. A. Shuman.
1998.
Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome.
Proc. Natl. Acad. Sci. USA
95:1669-1674 |
| 30. | Segal, G., and H. A. Shuman. 1997. Characterization of a new region required for macrophage killing by Legionella pneumophila. Infect. Immun. 65:5057-5066[Abstract]. |
| 31. | Swanson, M. S., and R. R. Isberg. 1995. Association of Legionella pneumophila with the macrophage endoplasmic reticulum. Infect. Immun. 63:3609-3620[Abstract]. |
| 32. | Wiater, L. A., A. B. Sadosky, and H. A. Shuman. 1994. Mutagenesis of Legionella pneumophila using Tn903dIIlacZ: identification of a growth-phase-regulated pigmentation gene. Mol. Microbiol. 11:641-653[Medline]. |
| 32a. | Wiater, L. A., K. Dunn, F. R. Maxfield, and H. A. Shuman. Unpublished data. |
| 33. | Woodcock, D. M., P. J. Crowther, J. Doherty, S. Jefferson, E. DeCruz, M. Nayer-Weidner, S. S. Smith, M. Z. Michael, and M. W. Graham. 1989. Quantitation evaluation of Escherichia coli for tolerance of cytosine methylation in plasmid and phage recombination. Nucleic Acids Res. 9:3469-3478. |
This article has been cited by other articles: