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Infect Immun, July 1998, p. 3088-3094, Vol. 66, No. 7
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Heterogeneity in Levels of Vacuolating Cytotoxin
Gene (vacA) Transcription among Helicobacter
pylori Strains
M. H.
Forsyth,1
J. C.
Atherton,2
M. J.
Blaser,1,3 and
T. L.
Cover1,3,*
Departments of Medicine and Microbiology and
Immunology, Vanderbilt University School of
Medicine,1 and
Veterans Affairs
Medical Center,3 Nashville, Tennessee, and
Division of Gastroenterology and Institute of Infections
and Immunity, University of Nottingham, Nottingham, United
Kingdom2
Received 2 September 1997/Returned for modification 4 November
1997/Accepted 24 April 1998
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ABSTRACT |
Broth culture supernatants from Tox+ Helicobacter
pylori strains induce vacuolation of HeLa cells in vitro
and contain VacA in concentrations that are higher than those
found in supernatants from Tox
H. pylori
strains. To investigate the basis for this phenomenon, we
analyzed the transcription of the vacuolating cytotoxin gene (vacA) in eight Tox+ strains (each with a type
s1/m1 vacA genotype) and nine Tox
strains
(each with a type s2/m2 vacA genotype). Most of the
Tox+ and Tox
strains tested used the same
vacA transcriptional start point, but Tox+
strains yielded significantly stronger primer extension signal intensities than did Tox
strains (mean densitometry
values of 15.8 ± 1.9 versus 8.9 ± 1.7, P = 0.0016). Correspondingly, when we introduced
vacA::xylE transcriptional
fusions into the chromosomes of a Tox+ strain (60190) and a
Tox
strain (86-313), the level of XylE activity in 60190 vacA::xylE was about 30-fold higher
than that in 86-313 vacA::xylE.
Sequence analysis and promoter exchange experiments indicated that the different levels of vacA transcription in these two strains
cannot be explained solely by a difference in promoter strength. These data indicate that Tox+ and Tox
H. pylori strains typically differ not only in the VacA amino acid
sequence but also in the level of vacA transcription.
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INTRODUCTION |
Helicobacter pylori
organisms are curved, gram-negative bacteria found associated with the
gastric epithelia of humans and other primates. Colonization of the
human stomach with H. pylori consistently results in
the development of gastric mucosal inflammation and is a risk factor
for the development of peptic ulcer disease and gastric adenocarcinoma
(7, 17, 21). One putative virulence determinant of
H. pylori is a unique toxin (VacA) that induces vacuolation of epithelial cells (5, 22). VacA is initially translated as a 140-kDa protoxin, which subsequently undergoes both
N-terminal and C-terminal processing to yield an ~90-kDa mature
secreted toxin (10, 23-25). Deep-etch electron microscopic analysis indicates that VacA forms large, six- or seven-sided complexes
comprised of 12 or 14 subunits (9, 20).
Considerable variation exists among different H. pylori strains in the production of vacuolating cytotoxin
activity. Thus, broth culture supernatants from some H. pylori strains (designated Tox+) induce vacuolation of
HeLa cells in vitro, whereas other H. pylori strains
(designated Tox
) lack detectable vacuolating activity in
this assay (2, 8, 18). In previous studies, it has been
shown that all H. pylori isolates hybridize with
vacA probes (2, 10, 24, 25), but the
vacA alleles in Tox+ strains are typically
considerably different from those in Tox
strains (2,
10). A system for classifying vacA alleles has been
developed in which specific families of vacA alleles are associated with the production of detectable vacuolating cytotoxin activity (2). Specifically, most H. pylori
strains with a type s1 vacA signal sequence and a type m1
vacA midregion induce prominent cell vacuolation, whereas
strains with a type s2 signal sequence and type m2 midregion
consistently fail to induce cytotoxic effects (2). In
addition to these vacA sequence differences, there is also
evidence that concentrations of VacA are higher in broth culture
supernatants from Tox+ strains than in supernatants from
Tox
strains (6, 8).
In this report, we demonstrate that vacA is transcribed in
both Tox+ and Tox
strains, but transcription
typically occurs at higher levels in Tox+ strains than in
Tox
strains. This variation is not attributable to
differences in vacA transcriptional start points and is not
due solely to differences in vacA promoter strength.
Heterogeneity in vacA transcription levels among
H. pylori strains may be a factor that contributes to
different vacuolating cytotoxin phenotypes.
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MATERIALS AND METHODS |
Bacteria and culture conditions.
H. pylori
strains were cultured at 37°C in ambient air containing 5%
CO2. The wild-type H. pylori strains used
in this study are listed in Table 1. The
vacA genotypes of all strains were determined by a PCR-based
typing method as previously described (2). Complete or
partial vacA sequences from several of these strains have
been reported previously (Table 1).
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TABLE 1.
Vacuolating cytotoxin activities and vacA
transcriptional activities of H. pylori strains used in
this study
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Analysis of VacA production.
H. pylori strains
were cultured in sulfite-free brucella broth containing 5% fetal
bovine serum (FBS) for approximately 24 h and harvested after
reaching an optical density at 600 nm (OD600) of about 0.5. After centrifugation of the cultures, the supernatants were
concentrated by ultrafiltration and tested for vacuolating cytotoxin
activity by adding serial dilutions to HeLa cells in tissue culture
medium containing 10 mM ammonium chloride as described previously
(8). The broth culture supernatants were immunoblotted with
rabbit anti-VacA serum prepared by immunizing a rabbit with purified,
denatured VacA from H. pylori 60190 as described
previously (6). As another approach for analyzing
concentrations of VacA in culture supernatants, H. pylori 60190, 86-338, and 86-313 were grown in sulfite-free
brucella broth containing 0.5% activated charcoal, and oligomeric VacA
was purified from the broth culture supernatants as described
previously (9). Yields of purified VacA were assessed by
measuring the OD280 of VacA-containing fractions and by
semiquantitative analysis of the density of VacA bands after sodium
dodecyl sulfate-polyacrylamide gel electrophoresis and silver staining.
Molecular biology methods.
To prepare genomic DNA from
H. pylori, cells were suspended in TE buffer (10 mM
Tris, 1 mM EDTA, pH 8.0) and lysed by the addition of sodium dodecyl
sulfate and proteinase K (final concentrations of 0.5% and 0.1 mg/ml,
respectively) at 37°C for 45 min. Sodium chloride was then added to a
final concentration of 0.7 M, and a solution of 10%
hexadecyltrimethylammonium bromide-0.7 M sodium chloride was added
to yield a final hexadecyltrimethylammonium bromide concentration of
1%. Cell lysates were incubated at 65°C for 10 min. Following the
addition of an equal volume of chloroform, cell debris was cleared by
centrifugation for 10 min at 10,000 × g. Supernatants
were then extracted sequentially with equal volumes of chloroform and
phenol-chloroform (1:1) and precipitated with isopropanol
(3).
All PCRs were carried out in 100-µl volumes with 1.5 mM magnesium
chloride and 200 µM dATP, dCTP, dGTP, and dTTP. AmpliTaq DNA
polymerase (Perkin-Elmer) was added to a final concentration of 2.5 U/100 µl. Primers were used at a concentration of 1 µM. The
template DNA concentration was 100 ng of chromosomal DNA per reaction
or 25 to 100 ng of plasmid DNA per reaction. Denaturation was uniformly
at 94°C for 1 min, and annealing temperatures were 5°C below the
melting temperature of the primers. Extension at 72°C was for 1 min/kb of amplification product.
Inverse PCR was performed as described above but by using oppositely
oriented primers with
BglII restriction sites incorporated
at their 5' ends. After completion of thermal cycling, the template
DNA
was eliminated by
DpnI digestion. The sample then was
digested
with
BglII and purified by phenol-chloroform
extraction and ethanol
precipitation. Inverse PCR products were
recircularized with T4
DNA ligase and transformed into
Escherichia coli DH5

.
Primer extension analysis.
Seventeen different H. pylori strains were inoculated into sulfite-free brucella broth
containing 5% FBS such that the initial OD600 was
approximately 0.05. Cultures were harvested when the OD600
reached approximately 0.5. Total cellular RNA was extracted from the
bacterial pellets by using the hot phenol method (12). Standardized (40-µg) RNA samples from each strain were heated to
90°C for 2 min in a buffer consisting of 20 mM Tris (pH 8.0), 100 mM
sodium chloride, 0.1 mM EDTA, and 20 ng of a
32P-end-labeled oligonucleotide (5'
TTTTTGCACAAAGGGTGCGAC). Following primer annealing at
50°C for 3 h, extension of the labeled primer was accomplished
by incubation in 50 mM Tris (pH 8.2)-6 mM MgCl2-10 mM
dithiothreitol-0.2 mM deoxynucleoside triphosphates-5 U of avian myeloblastosis virus reverse transcriptase
(Promega) for 1 h at 42°C. Primer extension products and
sequencing reaction ladders generated by using the same primer were
analyzed on 7 M urea-8% polyacrylamide gels. Signal
intensities were quantified by densitometry using a GS-670 densitometer
and Molecular Analyst version 1.4.1 software (Bio-Rad).
Construction of a vacA::xylE
transcriptional fusion in Tox+ H. pylori
60190.
The promoterless xylE gene, encoding
Pseudomonas putida catechol 2,3-dioxygenase, was fused
upstream of a kanamycin resistance gene (hereafter designated
km) such that these two genes were transcribed in the same
direction and the kanamycin resistance gene retained its native
promoter sequence (16). This xylE/km cassette was
cloned into the unique BglII site within pCTB6, which contains a vacA gene fragment of H. pylori
60190 (10). The resultant plasmid construct,
pCTB6::xylE/km, was used to introduce the
xylE/km cassette into vacA of H. pylori 60190 by natural transformation and allelic exchange
(10). Transformants were selected on brucella agar plates
supplemented with 5% FBS and kanamycin (40 µg/ml). The orientation
of the cassette in the transformants was determined by PCR with a
xylE-specific forward primer (5' CATGACGTCACCTCTTCATAG) and a vacA-specific reverse primer (5'
GCCTTTTTTACAACCGTGATC). The resultant Tox+
vacA reporter strain, with xylE in the same
orientation as vacA transcription, is designated 60190 VX-1
(see Fig. 4A).
Construction of a vacA::xylE
transcriptional fusion in Tox
H. pylori
86-313.
A 1.3-kb internal fragment of vacA from
Tox
strain 86-313 was PCR amplified by using primers
5' CCCACGCAAGTCATTGATGG 3' and 5' GGTATTATTTTTTCGCACCAC
3' (2) and cloned into pT7 Blue (Novagen), resulting
in pA144. The xylE/km cassette described above was cloned into the unique EcoRV site within this vacA
sequence. The resulting plasmid, pA144::xylE/km,
was introduced into strain 86-313 via natural transformation, and
kanamycin-resistant colonies were selected. The resulting 86-313 vacA::xylE reporter strain, with xylE in the same orientation as vacA
transcription, is designated 86-313 VX-1 (see Fig. 3A).
Construction of chimeric strains with alternate vacA
promoters.
To place the vacA::xylE
transcriptional fusion in strain 86-313 VX-1 under the control of a
Tox+ promoter, a 1.3-kb fragment was amplified from
Tox+ 60190 genomic DNA by using primers 5'
AATTACTTGCTAGGGGTGCATTAT 3' and 5' ATCAGCACTATCCTTATAGCTTG
3'. This fragment contains 519 bp from the 3' end of
cysS, the cysS-vacA intergenic region, and 548 bp
from the 5' end of vacA and was cloned into pT7Blue
(Novagen) to yield pBW5. The chloramphenicol acetyltransferase
(cat) gene of Campylobacter coli (26)
was then cloned into the HindIII site at the 3' terminus
of cysS, in the orientation opposite to that of
vacA to yield pBW5cat (see Fig. 3B). This plasmid
was used to introduce the Tox+ vacA promoter and
adjacent sequences into the Tox
reporter strain 86-313 VX-1 described above. Transformants were screened on brucella agar
containing 5% FBS and chloramphenicol (10 µg/ml). The extent of
replacement of 86-313 sequences with 60190 sequences in the resulting
Kmr Cmr 86-313 VX-1 transformants was
determined by PCR amplification and sequencing of the
cysS-vacA intergenic region. The chimeric strain shown in
Fig. 3B is designated 86-313 VXC-1.
To place the
vacA::
xylE transcriptional
fusion in strain 60190 VX-1 under the control of a Tox

promoter, a DNA fragment was amplified from Tox

strain
86-313 by using primers 5' GAAGAACTGCTTGGCATCGGG 3' and
5' ATTCCATTTTCTTCCTTTC 3'. This fragment contains 221 bp of
cysS,
the entire
cysS-vacA intergenic region, and
the first 7 bp of
the
vacA structural gene. The resulting
PCR product was cloned
into pBluescript SK+ to yield pBW3. A unique
BglII site was introduced
3 bp downstream of the stop codon
of
cysS in pBW3 by inverse PCR
mutagenesis by using primers
with
BglII sites incorporated at
the 5' ends (5'
GAAGATCTAGCTTAAAAAAGCTTCTCCCAAATCGTGCC and 5'
GAAGATCTTCTTTAAATTTTACCTATTTACGCACTC) to yield pBW4. The
cat gene
from
C. coli (
26) was cloned
into the
BglII site after ends
were made blunt by treatment
with Klenow fragment (
3). A construct,
designated
pBW4
cat, was selected in which
cat and
vacA are divergently
transcribed (see Fig.
4B). To replace
the native
vacA promoter
in Tox
+ reporter strain
60190 VX-1 with the
vacA promoter from Tox

strain 86-313, strain 60190 VX-1 was transformed with
pBW4
cat.
Cm
r Km
r transformants were
selected, and the extent of sequence replacement
was determined by PCR
amplifying and sequencing the entire
cysS-vacA intergenic
region of the transformants. The resulting chimeric
strain shown in
Fig.
4B is designated 60190 VXC-1.
The introduction of heterologous promoter sequences into either of the
chimeric reporter strains required the presence of
two different
selectable markers (described above). To determine
whether introduction
of the
cat gene alone altered levels of
vacA transcription, this gene was introduced into the chromosomes of
strains
60190 VX-1 and 86-313 VX-1 in the same orientation and
at the same
sites as described previously. This was accomplished
by transformation
of strain 86-313 VX-1 with pBW4
cat to generate
an isogenic
Km
r Cm
r Tox

reporter strain
(86-313 VX-1
cat control) with a
cat marker at
the 3' terminus of
cysS (see Fig.
3C). A similar control for
the
Tox
+ reporter, 60190 VX-1, was generated by
transformation with pCTB2
cat to yield the isogenic
Km
r Cm
r reporter strain 60190 VX-1
cat control (see Fig.
4C).
Assay for XylE activity.
XylE activity was assessed
qualitatively at the colony level by spraying colonies grown on
brucella agar-5% FBS-kanamycin (40 µg/ml) with 20 mM catechol in
distilled water and visually examining colonies for the yellow reaction
product 2-hydroxymuconic semialdehyde. For quantitative assays, cells
were harvested from broth cultures by centrifugation and resuspended in
50 mM potassium phosphate buffer (pH 7.5), and the cell density was
quantified and standardized by measuring OD600. Catechol
was added to a final concentration of 3 mM, and enzyme specific
activities were determined spectrophotometrically in a Beckman DU 7400 spectrophotometer at 375 nm (11, 27). One unit of XylE
activity corresponds to the formation at 22°C of 1 mmol of
2-hydroxymuconic semialdehyde/min (molar extinction coefficient,
4.4 × 104).
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RESULTS AND DISCUSSION |
Characterization of VacA production by a panel of H. pylori strains.
In this study, we analyzed eight
H. pylori strains with a type s1/m1 vacA
genotype and nine strains with a type s2/m2 vacA genotype
(Table 1). Each strain was grown in broth culture until a standardized
OD600 was reached, and the broth culture supernatants then
were concentrated by ultrafiltration and tested in a HeLa cell
vacuolation assay. Broth culture supernatants from each of the type
s1/m1 strains (Tox+) induced vacuolation of HeLa cells,
whereas supernatants from each of the type s2/m2 strains
(Tox
) did not (Table 1). Immunoblotting studies with
anti-VacA serum indicated that an immunoreactive ~90-kDa band was
present in broth culture supernatants from all 17 strains (data not
shown). However, when standardized amounts of supernatant protein from
different strains were immunoblotted and compared, the VacA bands in
Tox+ supernatants tended to be darker than those in
Tox
supernatants. To compare the concentrations of VacA
in Tox+ and Tox
supernatants by another
approach, VacA was purified from standardized volumes of culture
supernatant from three strains (Tox+ strain 60190, Tox
strain 86-338, and Tox
strain 86-313)
and the yields of purified VacA were analyzed as described in Materials
and Methods. The broth culture supernatant from H. pylori 60190 yielded about 10-fold higher quantities of purified
oligomeric VacA than did the supernatant from strain 86-338 and
>50-fold higher quantities than the supernatant from strain 86-313 (data not shown). These data indicate that all of the H. pylori strains tested produce a VacA product, but supernatants from Tox+ strains contain higher concentrations of VacA
than do supernatants from Tox
strains.
Primer extension analysis of vacA transcription.
To investigate a possible basis for the different concentrations of
VacA in supernatants from Tox+ and Tox
strains, we analyzed vacA transcription in the panel of 17 H. pylori strains by quantitative primer extension
analysis (Fig. 1). The primer for these
experiments (Fig. 2) was chosen based on
the fact that its sequence was 100% complementary to the corresponding vacA sequences of the seven different Tox+ and
three Tox
strains sequenced to date (including strains
60190, 84-183, 87-199, Tx30a, 86-313, and 87-203 from the current
study), thereby reducing the possibility that varying signal strengths
could be due to inefficient primer annealing. As shown in Fig. 1,
vacA transcription was detected in all 17 strains, and 15 strains (7 Tox+ and 8 Tox
) used the same
conserved single transcriptional start point (TSP). This site was
located 1 nucleotide downstream from the vacA
transcriptional start site identified in a previous study
(24). The use of a second primer
(5'AGAGGGCGATTGATTTTGCGGTGTG), which anneals farther downstream within the vacA coding region, confirmed the use
of this TSP and failed to demonstrate any alternate start sites (data not shown). A variant Tox+ strain (92-29) appeared to use a
TSP located 1 bp closer to the translational start codon (Fig. 1),
which could potentially be due to a 1-bp deletion within the 5'
untranslated region of this strain. A variant Tox
strain
(87-75) simultaneously used three different, adjacent nucleotides as
TSPs (Fig. 1). The conservation of adenosine as the +1 site for
vacA transcription in most strains may be important, because
it has been demonstrated that the identity of the +1 site can affect
transcriptional efficiency (19). Although most strains used
the same vacA TSP, there was considerable variation in the intensity of primer extension signals (Fig. 1). Primer extension signals from eight Tox+ strains were significantly more
intense than signals from nine Tox
strains (relative
densitometry OD values [mean ± the standard error of the mean]
of 15.8 ± 1.9 versus 8.9 ± 1.7, P = 0.0016) (Fig. 1), although there were outliers in both groups. These data indicate that Tox+ and Tox
H. pylori strains differ in the level of vacA
transcription.

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FIG. 1.
Primer extension analysis of vacA mRNA.
vacA transcription was analyzed in 17 H. pylori strains (8 Tox+ and 9 Tox ) by
primer extension analysis using standardized (40-µg) RNA samples from
each strain and the primer 5'TTTTTGCACAAAGGGTGCGAC 3'. The
sequencing ladder was generated by using the same primer and pCTB2,
which contains a partial vacA sequence from H. pylori 60190, as the template (10). Tox+
strains are shown to the left of the sequencing ladder, and
Tox strains are shown to the right. Strain designations
are as follows: lane a, 60190; lane b, 84-183; lane c, 87-33; lane d,
87-81; lane e, 92-25; lane f, 92-29; lane g, 92-26; lane h, 87-199;
lane i, 86-338; lane j, Tx30a; lane k, 86-313; lane l, 87-75; lane m,
87-203; lane n, 92-28; lane o, 87-90; lane p, 87-230; lane q, 92-20. The ninth Tox strain (92-20) yielded a weak primer
extension product that was detectable with prolonged exposure (data not
shown). The signals from Tox+ strains were significantly
more intense than signals from Tox strains (mean
densitometry values of 15.8 ± 1.9 versus 8.9 ± 1.7, P = 0.0016).
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FIG. 2.
Comparison of cysS-vacA intergenic regions in
H. pylori 86-313 (Tox ) and 60190 (Tox+). The cysS-vacA intergenic region from
H. pylori 86-313 was PCR amplified and sequenced as
described previously (14), and the sequence of the
corresponding region from H. pylori 60190 has been
reported previously (10). Analysis of the aligned sequences
demonstrated a 63-bp insertion in the cysS-vacA intergenic
region of Tox strain 86-313. The corresponding absence of
this sequence in Tox+ H. pylori 60190 is
denoted by dots. Positions of nucleotide identity are denoted by
asterisks. A 36-bp sequence and its direct repeat are indicated by
solid bars. The vacA transcriptional start points
(determined by primer extension analysis [Fig. 1]) are indicated by
the bent arrows. The putative Shine-Dalgarno (S/D) sequence and
putative 10 and 35 hexamers are boxed. The stop codon (TAA) of
cysS and the start codon (ATG) of vacA are in
boldface. The primer used to determine vacA transcriptional
start points (Fig. 1) is indicated by an arrow over the complementary
sequences.
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Introduction of vacA::xylE
transcriptional fusions into H. pylori 60190 and
86-313.
To investigate further the apparent differences among
strains in the level of vacA transcription, we introduced
vacA::xylE transcriptional fusions into
the chromosomes of two H. pylori strains,
Tox+ strain 60190 and Tox
strain 86-313. These two strains were chosen based on the primer extension data, which
indicated a difference in the level of vacA transcription
(Fig. 1), and because both strains were known to be naturally
competent for transformation (unpublished data). The introduction
of vacA::xylE transcriptional
fusions into strains 60190 and 86-313 yielded strains 60190 VX-1
and 86-313 VX-1, respectively (Fig.
3A and
4A). The XylE activity
was more than 30-fold higher in Tox+ reporter strain 60190 VX-1 than in Tox
reporter strain 86-313 VX-1 (76,500 ± 500 versus 2,136 ± 500 mU/OD600, P < 0.001). Thus, both primer extension analysis and vacA::xylE transcriptional fusion data
indicated that these two strains differ in the level of vacA
transcription.

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FIG. 3.
Construction of
vacA::xylE transcriptional fusions in
Tox H. pylori 86-313. Sequences derived
from Tox+ strain 60190 are represented by open boxes.
Sequences derived from Tox strain 86-313 are indicated by
black boxes. Vector sequences are shown as thin, single lines. The
vacA TSP (+1) is represented by a bent arrow. The
directional arrow in the xylE/km cassette denotes the
orientation of xylE. The kanamycin resistance gene
(km) is transcribed under the control of its native promoter
and in the same direction as xylE. (A) Construction of a
vacA transcriptional reporter strain. The xylE/km
cassette was cloned into the EcoRV site of pA144, which
contains a 1.3-kb vacA fragment from Tox
strain 86-313 (yielding pA144::xylE/km). This
construct was introduced into the chromosome of strain 86-313 by
natural transformation and allelic exchange, and the resultant strain
(86-313 vacA::xylE) was designated
86-313 VX-1. (B) Introduction of Tox+ vacA
promoter region sequences into Tox strain 86-313. To
place the vacA::xylE fusion in 86-313 VX-1 under the control of a heterologous vacA promoter from
Tox+ strain 60190, the cat gene was cloned into
a fragment from strain 60190 containing the entire cysS-vacA
intergenic region (to yield pBW5cat). Natural transformation
and allelic exchange were used to introduce this sequence into the
86-313 VX-1 chromosome. The extent of vacA sequence exchange in the chimera was experimentally determined to be
up to +527, relative to the TSP. The resultant strain, which now
contains the vacA promoter region from 60190, was designated
86-313 VXC-1. (C) Construction of a chloramphenicol-resistant control
strain. The construction of the chimeric reporter outlined in panel B
required the use of a marker for chloramphenicol resistance. To
determine the effect of the cat gene alone on
vacA transcription, an isogenic control strain was
constructed by transforming Tox vacA reporter
strain 86-313 VX-1 with plasmid pBW4cat. The resultant
Cmr Kmr strain bears the cat gene at
the same location and in the same orientation as in the chimeric
reporter strain, 86-313 VXC-1, described above. This isogenic control
strain was designated 86-313 VX-1 cat control.
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FIG. 4.
Construction of
vacA::xylE transcriptional fusions in
Tox+ H. pylori 60190. Sequences derived
from Tox+ strain 60190 are represented by open boxes.
Sequences derived from Tox strain 86-313 are indicated by
black boxes. Vector sequences are shown as thin, single lines. The
vacA transcriptional start point (+1) is represented by a
bent arrow. The directional arrow in the xylE/km cassette
denotes the orientation of xylE. The kanamycin resistance
gene (km) is transcribed under the control of its native
promoter and in the same direction as xylE. (A) Construction
of a vacA transcriptional reporter strain. The
xylE/km cassette was cloned into the BglII site
of pCTB6, which contains a 3.2-kb vacA fragment from
Tox+ strain 60190 (yielding
pCTB6::xylE/km). This construct was introduced
into the chromosome of strain 60190 by natural transformation and
allelic exchange, and the resultant strain (60190 vacA::xylE) was designated 60190 VX-1.
(B) Introduction of Tox vacA promoter region
sequences into Tox+ strain 60190. To place the
vacA::xylE fusion in 60190 VX-1 under
the control of a heterologous vacA promoter from
Tox strain 86-313, the cat gene was cloned
into a fragment from strain 86-313 containing the entire
cysS-vacA intergenic region (to yield pBW4cat).
Natural transformation and allelic exchange were used to introduce this
sequence into the 60190 VX-1 chromosome. The extent of vacA sequence exchange in the
chimera was experimentally determined to be up to +87 relative to the
vacA TSP. The resultant strain, which now contains the
vacA promoter region from strain 86-313, was designated
60190 VXC-1. (C) Construction of a chloramphenicol-resistant control
strain. The construction of the chimeric reporter strain outlined in
panel B required the use of a marker for chloramphenicol resistance. To
determine the effect of the cat gene alone on
vacA transcription, an isogenic control strain was
constructed by transforming Tox+ vacA reporter
strain 60190 VX-1 with plasmid pCTB2cat. The resultant
Cmr Kmr strain bears the cat gene at
the same location and in the same orientation as in the chimeric
reporter strain, 60190 VXC-1, described above. This isogenic control
strain was designated 60190 VX-1 cat control.
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Comparison of vacA promoter strengths in H. pylori 60190 and 86-313.
One possible explanation for
differential vacA transcription among strains is the
occurrence of variations in vacA promoters. Such a
phenomenon accounts for the active transcription of the pertussis toxin
operon in Bordetella pertussis and the presence of a silent
toxin operon in B. parapertussis and B. bronchiseptica (1). Although the precise locations of
vacA promoter sequences in H. pylori have
not been determined, putative
10 and
35 hexamers can be inferred
based on spacing relative to the vacA transcriptional start
point and comparison with E. coli consensus sequences. A comparison of the putative vacA
10 and
35 sequences in
H. pylori 60190 and 86-313 reveals no obvious
differences that would account for the different levels of
vacA transcription in these two strains (Fig. 2). A second
potential explanation for the demonstrated difference in
vacA transcription might be varying numbers of binding sites
for a trans-acting factor. This possibility is relevant because unlike that of Tox+ strain 60190, the
cysS-vacA intergenic region of Tox
strain
86-313 contains a 63-bp insertion (14). This 63-bp insertion contains a 36-bp segment that is duplicated a few base pairs farther downstream (Fig. 2).
To determine experimentally whether sequence differences in the
cysS-vacA intergenic region might account for different
levels
of
vacA transcription, the
vacA::
xylE fusion in Tox

reporter strain 86-313 VX-1 was placed under the control of the
vacA promoter region from Tox
+ strain 60190. Sequence analysis confirmed that in this chimeric
reporter strain
(86-313 VXC-1), an exchange of promoter and signal
sequences had taken
place and that the 63-bp insertion had been
eliminated (Fig.
3B).
Nevertheless, there was no increase in XylE
activity in response to the
heterologous promoter sequences (Fig.
5).
These data indicate that the constraint on transcription in
strain
86-313 is not the consequence of either a weak promoter
or
cis-acting sequences in the promoter region.

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|
FIG. 5.
XylE activity of H. pylori
vacA::xylE transcriptional reporter strains.
Specific XylE activities (milliunits per OD600) were
determined by using bacteria that had been grown in brucella
broth-5% FBS for 18 h (late-log phase to early stationary
phase). In all assays, the densities of bacterial suspensions were
standardized by OD600. XylE activity was quantified as
described in Materials and Methods. Results represent the mean ± the standard deviation of three assays from a representative
experiment. Absolute values varied slightly from trial to trial, but
the overall pattern shown here is representative of three independent
experiments. Results from H. pylori 86-313 (parental
strain, no xylE fusion) are consistent with background
levels of 2-hydroxymuconic semialdehyde production. Levels of XylE
activity were significantly higher in strain 60190 VX-1 (lane 1) than
in strain 86-313 VX-1 (lane 4), P < 0.001. Placement
of the 86-313 vacA promoter upstream from vacA in
strain 60190 VX-1 resulted in a significant decrease in XylE activity
(compare lanes 2 and 3; P < 0.001) but did not reduce
activity to the same level as in strain 86-313 VX-1 (lanes 4 and 5).
|
|
In a converse experiment, the
vacA::
xylE transcriptional fusion in
Tox
+ reporter strain 60190 VX-1 was placed under the
control of the
vacA promoter from Tox

strain
86-313. Sequence analysis of the DNA from the resulting
chimeric
reporter, 60190 VXC-1, confirmed that all 73 bp upstream
from the
promoter, the putative

35 and

10 sequences, and the
5' untranslated
region through +87 in this chimeric strain had
been replaced with
sequences from strain 86-313 (Fig.
4B). The
level of XylE activity in
this chimera was about 65% less than
that of the control strain, 60190 VX-1
cat control (Fig.
5;
P < 0.001).
However, the level of XylE activity in the chimeric
strain was still
about 10-fold higher than that in Tox

reporter strain
86-313 VX-1 (Fig.
5).
The results of these promoter exchange experiments suggest that strains
60190 and 86-313 differ in
vacA promoter strength.
However,
any such difference must be dictated by sequences outside
the putative

10 and

35 hexamers, since these sequences are identical
in the two
strains. An important finding is that the Tox

(strain
86-313)
vacA promoter is capable of initiating higher
levels
of
vacA mRNA synthesis in the strain 60190 background than
in the strain 86-313 background. Therefore, it seems likely that
the
vacA transcription level difference between these two
strains
is not due solely to a difference in
vacA promoter
strength. One
possibility is the expression of a
trans-acting repressor factor
in strain 86-313, or
alternatively, that strain 60190 produces
an activator factor which is
absent or reduced in quantity or
function in strain 86-313.
Another possible explanation for these data is that strains 60190 and
86-313 differ in
vacA transcript stability. To investigate
this possibility, we attempted to determine the half-lives of
vacA transcripts in these two strains by using serial
quantitative
primer extension analyses of bacterial cells that had been
treated
with rifampin to inhibit RNA polymerase activity. These
experiments
repeatedly yielded nonlinear patterns of primer
extension signal
decay, and therefore, it remains unclear whether
strains 60190
and 86-313 differ in
vacA transcript
stability. Important determinants
of mRNA stability in
prokaryotic organisms include stem-loop structures
located at
either the 5' or the 3' ends of transcripts (
4,
12,
13). In
the promoter switching experiments described in
this report, we
replaced the entire 5' untranslated region of
vacA from
strain 86-313 with that from strain 60190 and failed
to demonstrate any
significant increase in
vacA transcription
in the chimeric
strain (86-313 VXC-1, Fig.
3). This suggests that
sequences at the 5'
end of
vacA mRNA do not significantly alter
vacA
mRNA stability. Both Tox
+ and Tox

strains
that have been analyzed thus far contain prominent stem-loop
structures
at the 3' ends of
vacA transcripts (
2,
10), and
thus, there is also no evidence that sequence differences in this
region would contribute to different
vacA mRNA stability.
Determinants of the vacuolating cytotoxin phenotype.
The two
groups of H. pylori strains analyzed in this study
(Tox+ and Tox
) clearly differ in the capacity
to induce vacuolation of HeLa cells. One explanation for this
difference, supported by data in this study, as well as previous
studies (6, 8), is that there are higher concentrations of
VacA in broth culture supernatant from Tox+ strains than in
supernatant from Tox
strains. Heterogeneity among strains
in the level of vacA transcription would undoubtedly be a
factor that contributes to this phenomenon. In addition, there also may
be heterogeneity among strains in the efficiency of vacA
secretion, possibly related to differences in vacA signal
sequences (2). In support of this hypothesis, in the present
study, we detected 10-fold higher concentrations of VacA in supernatant
from Tox+ H. pylori 60190 than in
supernatant from Tox
H. pylori 86-338 but
found that the two strains did not differ substantially in the level of
vacA transcription (Fig. 1 and Table 1).
A second explanation for different vacuolating phenotypes is that the
Tox
+ and Tox

strains analyzed in this study
produce
vacA products (types s1/m1
and s2/m2, respectively)
that have markedly different amino acid
sequences. Specifically, type
s1/m1 and type s2/m2 VacA proteins
are only about 58% identical
within a 250-amino-acid midregion
segment (
2). These
substantial differences would be expected
to result in considerably
different structural and functional
properties. Nevertheless, in
previous studies, we have demonstrated
that a type s2/m2 VacA
protein is capable of assembling into a
complex oligomeric structure
that is almost identical to that
of type s1/m1 VacA proteins
(
9). To determine whether the different
amino acid sequences
of type s1/m1 and s2/m2 VacA proteins are
important determinants of the
vacuolating cytotoxin phenotype,
we purified VacA oligomers from
culture supernatants of strains
60190 (type s1/m1 VacA) and 86-338 (type s2/m2 VacA) and tested
equal concentrations of the two
acid-activated proteins in a HeLa
cell vacuolation assay. This
experiment indicated that the s1/m1
VacA protein produced prominent
cell vacuolation, as expected,
whereas the type s2/m2 VacA protein
lacked any detectable activity
in this assay. Thus, equal
concentrations of VacA from Tox
+ and Tox

strains are not equal in toxicity.
In summary, the vacuolating cytotoxin phenotype of an
H. pylori strain is dependent on the amino acid sequence of its
vacA product but may also be modulated by other
strain-specific factors,
such as the level of
vacA
transcription or the efficiency of VacA
secretion. The considerable
variation in these determinants among
H. pylori strains
is consistent with the high level of genetic
diversity that exists in
the
H. pylori species (
15) and may
be
relevant to the occurrence of different clinical outcomes in
H. pylori-infected humans.
 |
ACKNOWLEDGMENTS |
This work was supported by grant AI 39657 from the National
Institutes of Health and by the Medical Research Service of the Department of Veterans Affairs. J.A. is the recipient of a Clinician Scientist Fellowship from the Medical Research Council (United Kingdom).
We thank Beverly Hosse for technical assistance and Mikio Karita for
his gift of the xylE/km cassette.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Division of
Infectious Diseases, Medical Center North A3310, Vanderbilt University School of Medicine, Nashville, TN 37232-2605. Phone: (615) 322-2035 Fax: (615) 343-6160 E-mail:
COVERTL{at}ctrvax.vanderbilt.edu.
Editor: J. G. Cannon
 |
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0019-9567/98/$04.00+0
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