Previous Article | Next Article 
Infect Immun, August 1998, p. 3545-3551, Vol. 66, No. 8
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Organization of Escherichia coli O157 O
Antigen Gene Cluster and Identification of Its Specific
Genes
Lei
Wang and
Peter R.
Reeves*
Department of Microbiology, The University of
Sydney, Sydney, New South Wales 2006, Australia
Received 1 December 1997/Returned for modification 27 February
1998/Accepted 5 May 1998
 |
ABSTRACT |
The O157:H7 clone of Escherichia coli, which causes
major, often prolonged outbreaks of gastroenteritis with
hemolytic-uremic syndrome (HUS) such as those in Japan, Scotland, and
the United States recently, is thought to be resident normally in
cattle or other domestic animals. This clone is of major significance for public health and the food industry. We have developed a fast method for sequencing a given O antigen gene cluster and applied it to
O157. The O157 O antigen gene cluster is 14 kb in length, comprising 12 genes and a remnant H-repeat unit. Based on sequence similarity, we
have identified all the necessary O antigen genes, including five sugar
biosynthetic pathway genes, four transferase genes, the O unit flippase
gene, and the O antigen polymerase gene. By PCR testing
against all 166 E. coli O serogroups and a range of
gram-negative bacterial strains, including some that cross-react
serologically with E. coli O157 antisera, we have found
that certain O antigen genes are highly specific to O157 E. coli. This work provides the basis for a sensitive test for rapid
detection of O157 E. coli. This is important both for
decisions on patient care, since early treatment may reduce the risk of life-threatening complications, and for detection of sources of contamination. The method for fast sequencing of O antigen gene clusters plus an ability to predict which genes will be O antigen specific will enable PCR tests to be developed as needed for other clones of E. coli or, once flanking genes are identified,
clones of any gram-negative bacterium.
 |
INTRODUCTION |
Escherichia coli is a
clonal species, with clones normally being identified by their
combination of O and H (and sometimes K) antigens. Some O antigens,
such as O157, are characteristically found in pathogenic clones, with
the O157:H7 clone being particularly significant in human disease,
since it has caused approximately two-thirds of all recent cases of
hemolytic-uremic syndrome in North America and Europe (32).
All enterohemorrhagic E. coli strains produce Shiga
toxins (Stx), but Stx-producing E. coli strains
possessing O antigen 157 are the most frequently isolated from humans
and are the predominant cause of hemolytic-uremic syndrome
(32). Because of the very low infective dose of this organism (14), bacteria entering the human food chain can
still pose a health problem after undergoing enormous dilution. For example, in January 1993 there was an outbreak due to contamination by
O157:H7 E. coli at a large meat-processing plant making
more than 1 million hamburger patties per day. The affected hamburgers were sold through one retail chain in four states, and 477 people became ill, of whom 3 died (3, 7). The scale of the plant and its operation was such that there would have been great dilution of
the contaminated meat, and the highest count of O157:H7 found in
hamburger patties of the same production date was 15 organisms per g,
although obviously the hamburgers which caused the infection were not
tested.
The O antigen, which contains many repeats of an oligosaccharide unit
(O unit), is part of the lipopolysaccharide present in the outer
membrane of gram-negative bacteria. It contributes major antigenic
variability to the cell surface, and on the basis of this variation
E. coli has been divided into 166 O serogroups. The
surface O antigen is subject to intense selection by the host immune
system, which may account for the maintenance of many different O
antigen forms within species such as E. coli.
Characteristically, all genes specific to O antigen synthesis are
clustered (27). Several O antigen gene clusters have been
cloned and sequenced, and some have been studied further. However, it
is time-consuming to clone an O antigen gene cluster, which is normally
longer than 10 kb. We have used the JUMPstart sequence, which is a
39-bp element present upstream of many polysaccharide gene clusters
(12), and the gnd sequence, which is present
downstream of O antigen gene clusters of E. coli,
Salmonella enterica, and related species (4, 29),
to amplify the O157 O antigen gene cluster by doing long PCR. The PCR
product was then subjected to random cleavage and the fragments
were cloned before sequencing. By using this method, a given O antigen
gene cluster can be sequenced within a few weeks.
The O157 O antigen contains
N-acetyl-D-perosamine, L-fucose,
D-glucose, and N-acetyl-D-galactose.
Analysis of the O157 sequence revealed four genes of the
GDP-L-fucose pathway (manB, manC,
gmd, and fcl), the per gene of the
GDP-perosamine pathway, a gene which probably encodes the
acetyltransferase to make GDP-N-acetylperosamine, three presumptive sugar transferase genes for synthesis of the O
unit, the O unit flippase gene, and the O antigen polymerase gene. By
PCR testing against all 166 known E. coli serogroups, a
range of gram-negative bacterial strains, and O157 E. coli strains not related to the strain used for sequencing, we
found that the O157 O antigen transferase, flippase, and polymerase
genes are O157 specific.
Great efforts have been made to develop a method for timely and
accurate detection of the O157:H7 strain (see, e.g., references 8, 10, 14, and 22). PCR-based
methods are ideal for rapid detection of organisms at low
concentrations. PCR detection with probes based on the Stx and
eaeA genes and a plasmid has been developed, but each probe
gave cross-reaction with other E. coli strains even
when only a small number of strains were tested (10).
 |
MATERIALS AND METHODS |
Bacterial strains.
Plasmids were maintained in E. coli K-12 strain JM109. E. coli O157:H7 (isolate
C664-1992) was from The International Escherichia and Klebsiella
Centre. Standard E. coli O group strains
(17) were used (see Table 1). Other strains used are also
listed in Table 1, together with the names of the suppliers.
Construction of a random DNase I bank.
Oligonucleotides 482 (5'-CACTGCCATACCGACGACGCCGATCTGTTGCTTGG) and 412 (5'-ATTGGTAGCTGTAAGCCAAGGGCGGTAGCGT) were used to PCR amplify the O antigen gene cluster. Long PCR was carried out with the
Expand Long Template PCR system from Boehringer. The PCR cycles were as
follows: denaturation at 94°C for 10 s, annealing at 64°C for
30 s, and extension at 68°C for 15 min. Two aliquots containing 150 ng of DNA of long-PCR product each were subjected to DNase I
digestion with the Novagen DNase shotgun cleavage kit and a modified
protocol as follows. Each aliquot was diluted into 45 µl of 0.05 M
Tris-HCl (pH 7.5)-0.05 mg of bovine serum albumin per ml-10 mM
MnCl2. A 5-µl volume of a 1:3,000 or 1:4,500 dilution of
DNase I (2 U/µl) (Novagen no. 69164-1) in the same buffer was added
to each tube (one dilution per aliquot), and 10 µl of stop buffer
(100 mM EDTA, 30% glycerol, 0.5% orange G, 0.075% xylene [Novagen
no. 69165-1]) was added after incubation at 15°C for 5 min. The
contents of the two DNase I reaction tubes were then combined and
fractionated on a 0.8% LMT agarose gel, and the gel segment with DNA
of about 1 kb (about 1.5 ml of agarose gel) was excised. DNA was
extracted from the agarose with the Promega Wizard PCR Preps DNA
purification system and resuspended in 200 µl of water before being
extracted once with phenol and twice with ether and then precipitated.
The DNA was resuspended in 17.25 µl of water and subjected to T4 DNA
polymerase repair and single dA tailing with the Novagen single dA
tailing kit. The reaction product (85 µl containing about 8 ng of
DNA) was then extracted with chloroform-isoamyl alcohol (24:1) once and
ligated to 3 × 10
3 pmol of pGEM-T (Promega) in a
total volume of 100 µl. Ligation was carried out overnight at 4°C,
and the ligated DNA was precipitated and resuspended in 20 µl of
water before being electroporated into E. coli JM109
and plated out on
5-bromo-4-chloro-3-indolyl-
-D-galactoside (BCIG)-isopropyl-
-D-thiogalactopyr anoside
(IPTG) plates to give a bank.
Sequencing and analysis.
The DNA template for sequencing was
prepared with a 96-well-format plasmid DNA miniprep kit (Advanced
Genetic Technologies Corp.) by the procedure developed in the Institute
for Genomic Research (TIGR) (34). Sequencing was performed
with an Applied Biosystems 377 automated DNA sequencer. Sequence data
were assembled and analyzed by using the Australian National Genomic
Information Service (ANGIS), which incorporates several sets of
programs (28). We used the algorithm described by Eisenberg
et al. (9) to identify potential transmembrane segments from
the amino acid sequence.
Specificity assay by PCR.
Chromosomal DNA was isolated with
the Promega Genomic isolation kit and checked by gel electrophoresis. A
total of 34 pools were made, with 6 to 12 samples of DNA per pool
(Table 1). Chromosomal DNAs from six
E. coli O157 strains, S. enterica serovar
Landau, Brucella abortus, and Yersinia
enterocolitica O9 were individually added to one pool containing
another seven samples to give pools 22 to 30. PCR was carried out in a
total volume of 25 µl, and then 10 µl was run on an agarose gel to
check for amplified DNA.
Nucleotide sequence accession number.
The DNA sequence
described here has been deposited in GenBank under accession no.
AF061251.
 |
RESULTS |
General strategy for sequencing O antigen gene clusters of
E. coli and related species.
Oligonucleotides which bind to the 5' end of the gnd gene
and the middle of the JUMPstart sequence were used for successful PCR amplification of O antigen gene clusters from all 10 randomly chosen serotypes of E. coli and S. enterica
(unpublished data).
A PCR fragment of about 14 kb was obtained from E. coli
O157:H7 isolate C664-1992, subjected to DNase I digestion, and cloned into pGEM-T to make a bank. To limit the effect of PCR errors, products
of five individual PCRs were pooled before making the bank. A total of
112 clones were first sequenced from one end, and 16 of the 112 were
then sequenced from the other end to obtain 85% double-strand
coverage. Gaps and regions of inadequate coverage were then sequenced
from specific PCR products amplified from chromosomal DNA. A sequence
of 14,002 bases was obtained, which covers the DNA from the end of
JUMPstart to the start of gnd.
O157 O antigen genes.
Twelve open reading frames were
predicted from the sequence (Fig. 1); all
have the same transcriptional direction from JUMPstart to
gnd. The nucleotide and amino acid sequences were used to
search available databases for indications of possible function.
The structure of the O157 O unit is known (Fig.
2) (23), and we expect genes
for GDP-L-fucose and
GDP-N-acetylperosamine synthesis (Fig.
3). orf10 and orf11
showed similarity to the many published manC and
manB genes, respectively, with the highest levels of
identity at the amino acid level being 64 and 97% to manC
of the E. coli O111 O antigen gene cluster
(2) and manB of the E. coli
colanic acid capsule gene cluster (30), respectively. orf10 and orf11 were named manC and
manB, i.e., genes for synthesis of GDP-mannose. Orf7
showed 89% identity to Gmd encoded by the E. coli
colanic acid capsule gene cluster which converts GDP-mannose to
GDP-4-keto-6-D-deoxymannose (30), and the gene
was named gmd. Orf8 showed 79 and 69% identity to WcaG of
the E. coli colanic acid capsule gene cluster and to
WbcJ (Orf14.8) of the Y. enterocolitica O8 O antigen gene
cluster, respectively (42). Colanic acid and the Y. enterocolitica O8 O antigen both contain fucose, as does the O157
O antigen. Two enzymatic steps are required for
GDP-L-fucose synthesis from
GDP-4-keto-6-D-deoxymannose, the product of Gmd (11). It has been shown that the human FX protein carries
out both reactions to convert GDP-4-keto-6-D-deoxymannose
to GDP-L-fucose (33). WcaG is the same size as
the human FX protein, and they have 29% amino acid sequence identity.
We have recently shown that WcaG can also carry out both reactions
(1) and have renamed the gene fcl
(L-fucose). We identify orf8 as fcl
on the basis of homology to fcl of the colanic acid cluster.
In support of the one enzyme carrying out both reactions is the
observation that there are no genes other than manB,
manC, gmd, and fcl with a high level
of similarity among the three sequenced bacterial gene clusters
encoding fucose-containing structures (E. coli
colanic acid, E. coli O157 O antigen, and Y. enterocolitica O8 O antigen [30, 42]). Orf5
is very similar to WbeE (RfbE) of Vibrio cholerae, which is thought to be the perosamine synthetase, which
converts GDP-4-keto-6-D-deoxymannose to
GDP-perosamine (31). V. cholerae O1 and
E. coli O157 O antigens contain perosamine and
N-acetylperosamine, respectively. The V. cholerae O1 manC, manB, gmd, and
wbeE genes are the only genes of the V. cholerae
O1 gene cluster with significant similarity to genes of the
E. coli O157 gene cluster, and we believe that our
observations both confirm the prediction made for the function of
wbeE of V. cholerae and show that orf5
of the O157 gene cluster encodes GDP-perosamine synthetase.
orf5 has therefore been named per. orf5 plus
about 100 bp of upstream DNA was previously sequenced by Bilge et al.
(5). orf12 includes 50 amino acids with
high-level similarity to a conserved region of an acetyltransferase family (16), and we believe that it encodes the
N-acetyltransferase which converts GDP-perosamine to
GDP-N-acetylperosamine. orf12 has been
named wbdR, but it could be renamed if the function were confirmed.

View larger version (10K):
[in this window]
[in a new window]
|
FIG. 3.
Biosynthetic pathway of GDP-L-fucose and
GDP-perosamine with gene names. The pathway begins with
fructose-6-phosphate, which is converted to
D-mannose-6-phosphate by the phosphomannose isomerase
encoded by manA. The manA gene is located outside
the O antigen gene cluster (4). The GDP-L-fucose
pathway was described by Ginsburg (11), and we have
identified all the genes (reference 30 and
unpublished data). The GDP-perosamine pathway is that proposed
by Stroeher et al. (31), and the genes assigned to each step
are based on sequence similarity described in the text.
|
|
We can also identify wzx (orf4, O unit flippase)
and wzy (orf2, O antigen polymerase) genes. Most
O antigens are synthesized with the Wzx-dependent system, in which
repeat O units are synthesized on the inner face of cytoplasmic
membrane before being transferred across the cytoplasmic membrane by
Wzx and polymerized by Wzy (26, 35). orf4 is
predicted to encode an integral inner membrane protein with 12 transmembrane segments. Orf4 shows similarity to many Wzx proteins and
has the approximate 50-amino-acid segment found near the amino-terminal
end of Wzx proteins with a conserved motif (30). The O
antigen polymerases thus far identified are integral membrane proteins
and have a similar predicted secondary structure (several transmembrane
segments with a large periplasmic loop) (21) but little
or no sequence similarity. orf2 encodes a protein with eight
predicted membrane segments and a large loop on the predicted
periplasmic face and fits the criteria to be named
wzy.
The orf1 and orf3 gene products showed
characteristics of the WcaA group of transferases: the members of this
group have some similarity at the amino-terminal end, and about 35 amino acids at various positions are highly conserved within this
region (30). orf1 and orf3 have been
named wbdN and wbdO, respectively. The amino acid
sequence encoded by orf6 showed the characteristics of
another group of transferases (the WcaC group) (30), and in
this case the conserved amino acids are located at various positions at
the carboxy-terminal end. orf6 has been named
wbdP. From the structure of the O157 O unit (Fig. 2), we
expect four transferases, including one to add the first sugar to the
carrier lipid undecaprenol phosphate (UndP), but have found only three presumptive transferase genes. Other than wzx and
wzy, none of the genes in the cluster encode predicted
integral membrane proteins, whereas the two proteins known to initiate
O unit synthesis by transfer of a sugar phosphate to UndP, WecA (Rfe)
and WbaP (RfbP), have several predicted transmembrane segments
(13, 20). We therefore suggest that as proposed on quite
good grounds for Y. enterocolitica (42), WecA
transfers GalNAc phosphate to UndP to initiate O unit synthesis as well
as initiating enterobacterial common-antigen synthesis by transfer of
GlcNAc phosphate. We can thus account for all the required steps for
synthesis of the O157 O antigen with 11 of the 12 genes of the cluster.
orf9 shows high-level similarity (44% identity at amino
acid level, same length) to the wcaH gene of the
E. coli colanic acid capsule gene cluster. There is no
homolog in the Y. enterocolitica O8 O antigen gene cluster,
so a role in GDP-fucose synthesis is not indicated (see the discussion
of fcl above). The function of this gene, named wbdQ, is unknown.
The DNA between manB and wbdR has strong sequence
similarity to one of the H-repeat units of E. coli K-12
(43). The inverted-repeat sequences flanking this
region are still recognizable, each with 2 of the 11 bases being
changed. The H-repeat-associated open reading frame located
within this region has a 267-bp deletion and a number of mutations
(including frameshift mutations) at various positions.
Identification of O157-specific genes.
O antigen gene clusters
generally contain about 8 to 20 genes, falling into three general
classes: (i) genes for synthesis of nucleotide sugar precursors
such as dTDP-rhamnose or GDP-N-acetylperosamine, (ii) genes for transfer of sugars to build the O unit, and (iii) genes which carry out specific assembly or processing steps in conversion of the O unit to the O antigen as part of the complete lipopolysaccharide (see the reviews by Reeves [25, 26]
and Whitfield [35]). Genes of the first class are
commonly present in many O antigen clusters, and sequence similarity is
usually sufficient to identify these genes in database searches; they may therefore give cross-reactions in DNA-based assays. Genes of the
second class are often group specific since they are specific for both
sugars of the linkage, and, furthermore, transferase genes for a given
linkage in different clusters may show negligible similarity (e.g.,
wbaW [rfbW] of S. enterica group C2
[18] and any of the presumptive
-mannose 1
2
mannose transferases of S. enterica group C1
[15]). Genes of the third class encode proteins such
as the O antigen polymerase and the flippase: these are most easily
identified on the basis of predicted transmembrane segments rather than
sequence per se and may also be group specific.
We used 16 pairs of oligonucleotide primers (Table 2), based on the
sequences of transferase, wzx, and wzy genes of
O157, in PCR with 34 pools of DNA (Table 1) to test the specificity of
these genes. The DNA in pools 1 to 21 includes DNA from strains representing the 165 other known E. coli serotypes, the
DNA in pools 22 to 30 includes DNA from E. coli O157
strains or strains of other species (Brucella abortus,
Y. enterocolitica O9, and S. enterica serovar
Adelaide) which cross-react serologically with E. coli
O157, and the DNA in pools 31 to 34 includes DNA from 11 Y. pseudotuberculosis, 12 Shigella boydii, 12 S. enterica, and 12 V. cholerae strains,
respectively, with each strain having a different O antigen. Each of
the 16 primer pairs produces a band of the predicted size from
pools containing O157 DNA (pools 22 to 27) (Table
2). Several other pools gave bands of
different sizes from that expected, which are attributed to nonspecific priming (Table 2). However, one primer pair produced two bands with Y. enterocolitica O9, one of which was the same
size as that from the positive control: this pair of primers is based
on the wzy sequence (Table 2). The predicted secondary
structures of Wzy proteins are generally similar, although there is
generally very low similarity at the amino acid or DNA level among the
sequenced wzy genes. Thus, it is possible that Y. enterocolitica O9 has a wzy gene closely related to
that of E. coli O157. It is also possible that this
band is due to chance hybridization of another gene, since the other
two wzy primer pairs did not produce any band with Y. enterocolitica O9. Pool 28 includes DNA of S. enterica serovar Landau (serogroup N), which has the same O antigen as E. coli O157 (23). Pools 29, 30, and 34 include DNA of B. abortus, Y. enterocolitica O9, and V. cholerae O1, respectively,
all of which have perosamine or
N-acetylperosamine in the O antigen, with the first
two also cross-reacting serologically with E. coli O157
antisera (6). These results indicate that the genes tested are highly O157 specific, although one primer pair may have
cross-reacted with Y. enterocolitica O9.
Thus, PCR with primers based on genes wbdN, wzy,
wbdO, wzx, wbdP, and wbdR
is highly specific for E. coli O157, giving positive results with each of six unrelated O157 strains, while only one primer
pair gave a band of the expected size with one of the three strains
with O antigens known to cross-react serologically with E. coli O157.
 |
DISCUSSION |
We have sequenced the O157 O antigen gene cluster and identified,
with various degrees of precision, all the genes required for the
synthesis of the O antigen. All but one of the genes have a low G+C
content (Fig. 1), as observed for other O antigen gene clusters, and
this indicates that, as appears to be quite common, the O157 O antigen
gene cluster was acquired by transfer from another species. The
exception is manB, which closely resembles the colanic acid
manB gene and has a 54% G+C content. This situation has
been observed in the S. enterica C1 and E. coli O7 O antigen gene clusters (15, 19), and it has
been suggested that in such cases the O antigen manB gene
was derived from the colanic acid gene cluster by recombination
(15).
A remnant H repeat, also with a low G+C content, is located upstream of
wbdR. The deletion and mutation in the H-repeat unit indicate that it has been associated with this gene cluster for a long
time since last undergoing transposition, perhaps having played a role
in assembly of the gene cluster. It is possible that in the absence of
wbdR, the predicted O-acetyltransferase gene, the
O antigen would be synthesized with perosamine in place of
N-acetylperosamine and that the gene is not
essential for O antigen synthesis: one can speculate that the ancestral
gene cluster contained perosamine and that the
N-acetyltransferase gene was added by lateral transfer
mediated by the H repeat, similar to the H-repeat-mediated gene
transfer proposed for the S. enterica D2 O antigen cluster
(41).
The currently accepted methods for the detection of Stx-positive O157
strains involve assays for the detection of Stx, either directly or by
PCR, coupled with plating on selective media directly or after
enrichment with O157-specific antibodies attached to paramagnetic
particles, followed by serotyping (O157 O antigen determination).
We have now identified genes highly specific to O157, since they
were detected by PCR in each of the six unrelated O157 strains but not
in any of the other strains tested, including representatives of the
165 other known E. coli O antigen forms, and a range of
other gram-negative bacteria. Thus, we believe that the genes are
suitable for use in a PCR-based method for identification of O157
strains to replace time-consuming plating and serotyping methods. We
also showed that these genes were E. coli O157 specific
in that they were not in general detectable by PCR in S. enterica serovar Landau, B. abortus, or Y. enterocolitica O9, which cross-react serologically with O157
antisera; this indicates that a PCR-based method would distinguish
these strains from E. coli O157, whereas serotyping
methods do not. For Y. enterocolitica O9, the choice of
primer for the wzy gene appears to be important since one
pair gave a band of the size expected for E. coli O157. The E. coli serotyping scheme is not yet fully
comprehensive, and there are other, as yet unidentified, O antigens.
For this reason, field strains and conditions must be tested to confirm the specificity, although we believe that all or most of these six
genes will be specific to O157 strains. Further specificity can be
gained by use of a combination of these genes, perhaps by PCR with
primers binding to adjacent genes.
There are many O157 clones (38), and it is the O157:H7 clone
for which there is major need for diagnostics. The use of an O157-specific test in screening for this organism is highly desirable, since in its serological form, it is the traditional test for identification of this clone. The O157 O antigen-specific test proposed
would have to be combined with tests for other genes such as the
stx gene. In this context, it has been shown that O157:H7
strains are in a small group which stands apart from most other
E. coli strains (24, 36-40). There may well
be sequences specific to this group which could also be useful to
distinguish the O157:H7 clone from others. The use of O157-specific PCR
allows one to use PCR tests for both stx (or other genes)
and the O antigen, avoiding the need to include serological testing.
We used two or three pairs of oligonucleotides for each gene in the PCR
test. Some of the primer pairs produced bands of the wrong size in some
or all of the sample pools. We believe that this is due to chance
priming elsewhere on the chromosome. This problem can be avoided by
using other primer pairs for those genes.
About 20 O antigen gene clusters have been sequenced, 7 of them in this
laboratory. Each involved laborious procedures for identification and
cloning of the gene cluster before sequencing. For the O157 sequence,
we have combined long PCR with approaches used for genome sequencing,
involving DNase I shotgun library construction and 96-well tray plasmid
preparation, to expedite the sequencing. These methods can be applied
to any O antigen gene cluster for which the flanking sequence is known.
This study demonstrated that certain classes of O antigen genes can be
highly specific, and now that a given O antigen gene cluster can be
fully sequenced within a few weeks, it is possible to quickly sequence
an O antigen gene cluster and determine specific probes for PCR-based
detection of the O antigen for any new strain which emerges as a
serious pathogen.
 |
ACKNOWLEDGMENTS |
We thank all the people and institutes listed in Table 1 for
kindly supplying strains, and we thank Heather Curd for excellent technical assistance.
This investigation was supported by Bioproperties (Australia) Pty Ltd.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology (GO8), The University of Sydney, Sydney, NSW 2006, Australia. Phone: (612) 9351 2536. Fax: (612) 9351 4571. E-mail:
reeves{at}angis.su.oz.au.
Editor: P. E. Orndorff
 |
REFERENCES |
| 1.
|
Andrianopoulos, K.,
L. Wang, and P. R. Reeves.
1998.
Identification of the fucose synthetase gene in the colanic acid gene cluster of Escherichia coli K-12.
J. Bacteriol.
180:998-1001[Abstract/Free Full Text].
|
| 2.
|
Bastin, D. A., and P. R. Reeves.
1995.
Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111.
Gene
164:17-23[Medline].
|
| 3.
|
Bell, B. P.,
M. Goldoft,
P. M. Griffin,
M. A. Davis,
D. C. Gordon,
P. I. Tarr,
C. A. Bartleson,
J. H. Lewis,
T. J. Barrett,
J. G. Wells,
R. Baron, and J. Kobayashi.
1994.
A multistate outbreak of Escherichia coli O157:H7-associated bloody diarrhea and hemolytic uremic syndrome from hamburgers. The Washington experience.
JAMA
272:1349-1353[Abstract].
|
| 4.
|
Berlyn, M. K. B.,
K. B. Low,
K. E. Rudd, and M. Singer.
1996.
Linkage map of Escherichia coli K-12, p. 1715-1902.
In
F. D. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 2. American Society for Microbiology, Washington, D.C.
|
| 5.
|
Bilge, S. S.,
J. C. Vary,
S. F. Dowell, and P. I. Tarr.
1996.
Role of the Escherichia coli O157-H7 O side chain in adherence and analysis of an rfb locus.
Infect. Immun.
64:4795-4801[Abstract].
|
| 6.
|
Caroff, M.,
D. R. Bundle, and M. B. Perry.
1984.
Structure of the O-chain of the phenol-phase soluble cellular lipopolysaccharide of Yersinia enterocolitica serotype O:9.
Eur. J. Biochem.
139:195-200[Medline].
|
| 7.
|
Centers for Disease Control.
1993.
Update. Multistate outbreak of Escherichia coli O157:H7 infections from hamburgers western United States, 1992-1993.
Morbid. Mortal. Weekly Rep.
42:258-263[Medline].
|
| 8.
|
Cubbon, M. D.,
J. E. Coia,
M. F. Hanson, and F. M. Thomson-Carter.
1996.
A comparison of immunomagnetic separation, direct culture and polymerase chain reaction for the detection of verocytotoxin-producing Escherichia coli O157 in human faeces.
J. Med. Microbiol.
44:219-222[Abstract].
|
| 9.
|
Eisenberg, D.,
E. Schwarz,
M. Komaromy, and R. Wall.
1984.
Analysis of membrane and surface protein sequences with the hydrophobic moment plot.
J. Mol. Biol.
179:125-142[Medline].
|
| 10.
|
Fratamico, P. M.,
S. K. Sackitey,
M. Wiedmann, and M. Y. Deng.
1995.
Detection of Escherichia coli O157:H7 by multiplex PCR.
J. Clin. Microbiol.
33:2188-2191[Abstract].
|
| 11.
|
Ginsburg, V.
1961.
Studies of the biosynthesis of guanosine diphosphate L-fucose.
J. Biol. Chem.
236:2389-2393[Free Full Text].
|
| 12.
|
Hobbs, M., and P. R. Reeves.
1994.
The JUMPstart sequence: a 39 bp element common to several polysaccharide gene clusters.
Mol. Microbiol.
12:855-856[Medline].
|
| 13.
|
Jiang, X. M.,
B. Neal,
F. Santiago,
S. J. Lee,
L. K. Romana, and P. R. Reeves.
1991.
Structure and sequence of the rfb (O antigen) gene cluster of Salmonella serovar typhimurium (strain LT2).
Mol. Microbiol.
5:695-713[Medline].
|
| 14.
|
Keene, W. E.,
J. M. McAnulty,
F. C. Hoesly,
L. P. Williams,
K. Hedberg,
G. L. Oxman,
T. J. Barrett,
M. A. Pfaller, and D. W. Fleming.
1994.
A swimming-associated outbreak of hemorrhagic colitis caused by Escherichia coli O157:H7 and Shigella sonnei.
N. Engl. J. Med.
331:579-584[Abstract/Free Full Text].
|
| 15.
|
Lee, S. J.,
L. K. Romana, and P. R. Reeves.
1992.
Sequence and structural analysis of the rfb (O antigen) gene cluster from a group C1 Salmonella enterica strain.
J. Gen. Microbiol.
138:1843-1855[Medline].
|
| 16.
|
Lin, W.,
T. Cunneen, and C. Lee.
1994.
Sequence analysis and molecular characterization of genes required for the biosynthesis of type 1 capsular polysaccharide in Staphylococcus aureus.
J. Bacteriol.
176:7005-7016[Abstract/Free Full Text].
|
| 17.
|
Lior, H.
1994.
Classification of Escherichia coli, p. 31-72.
In
C. L. Gyles (ed.), Escherichia coli in domestic animals and humans. CAB International, Wallingford, United Kingdom.
|
| 18.
|
Liu, D.,
L. Lindquist, and P. R. Reeves.
1995.
Transferases of O-antigen biosynthesis in Salmonella enterica: dideoxhexosyl transferases of groups B and C2 and acetyltransferase of group C2.
J. Bacteriol.
177:4084-4088[Abstract/Free Full Text].
|
| 19.
|
Marolda, C. L., and M. A. Valvano.
1993.
Identification, expression, and DNA sequence of the GDP-mannose biosynthesis genes encoded by the O7 rfb gene cluster of strain VW187 (Escherichia coli O7:K1).
J. Bacteriol.
175:148-158[Abstract/Free Full Text].
|
| 20.
|
Meier-Dieter, U.,
K. Barr,
R. Starman,
L. Hatch, and P. D. Rick.
1992.
Nucleotide sequence of the Escherichia coli rfe gene involved in the synthesis of enterobacterial common antigen.
J. Biol. Chem.
267:746-753[Abstract/Free Full Text].
|
| 21.
|
Morona, R.,
M. Mavris,
A. Fallarino, and P. A. Manning.
1994.
Characterization of the rfc region of Shigella flexneri.
J. Bacteriol.
176:733-747[Abstract/Free Full Text].
|
| 22.
|
Park, C. H.,
N. M. Vandel, and D. L. Hixon.
1996.
Rapid immunoassay for detection of Escherichia coli O157 directly from stool specimens.
J. Clin. Microbiol.
34:988-990[Abstract].
|
| 23.
|
Perry, M. B.,
L. MacLean, and D. W. Griffith.
1986.
Structure of the O-chain polysaccharide of the phenol-phase soluble lipopolysaccharide of Escherichia coli O157:H7.
Biochem. Cell Biol.
64:21-28[Medline].
|
| 24.
|
Pupo, G. M.,
D. K. R. Karaolis,
R. Lan, and P. R. Reeves.
1997.
Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies.
Infect. Immun.
65:2685-2692[Abstract].
|
| 25.
|
Reeves, P. R.
1993.
Evolution of Salmonella O antigen variation by interspecific gene transfer on a large scale.
Trends Genet.
9:17-22[Medline].
|
| 26.
|
Reeves, P. R.
1994.
Biosynthesis and assembly of lipopolysaccharide.
New Compr. Biochem.
27:281-314.
|
| 27.
|
Reeves, P. R.,
M. Hobbs,
M. Valvano,
M. Skurnik,
C. Whitfield,
D. Coplin,
N. Kido,
J. Klena,
D. Maskell,
C. Raetz, and P. Rick.
1996.
Bacterial polysaccharide synthesis and gene nomenclature.
Trends Microbiol.
4:495-503[Medline].
|
| 28.
|
Reisner, A. H.,
C. A. Bucholtz,
J. Smelt, and S. McNeil.
1993.
Australia's National Genomic Information Service, p. 595-602.
In
Proceedings of the Twenty-Sixth Annual Hawaii International Conference on Systems Science, vol. 1. .
|
| 29.
|
Sanderson, K. E.,
A. Hessel, and K. E. Rudd.
1995.
Genetic map of Salmonella typhimurium, edition VIII.
Microbiol. Rev.
59:241-303[Abstract/Free Full Text].
|
| 30.
|
Stevenson, G.,
K. Andrianopoulos,
H. Hobbs, and P. R. Reeves.
1996.
Organization of the Escherichia coli K-12 gene cluster responsible for production of the extracellular polysaccharide colanic acid.
J. Bacteriol.
178:4885-4893[Abstract/Free Full Text].
|
| 31.
|
Stroeher, U. H.,
L. E. Karageorgos,
M. H. Brown,
R. Morona, and P. A. Manning.
1995.
A putative pathway for perosamine biosynthesis is the first function encoded within the rfb region of Vibrio cholerae O1.
Gene
166:33-42[Medline].
|
| 32.
|
Tarr, P. I.
1995.
Escherichia coli O157:H7: clinical, diagnostic, and epidemiological aspects of human infection.
Clin. Infect. Dis.
20:1-8[Medline].
|
| 33.
|
Tonetti, M.,
L. Sturla,
A. Bisso,
U. Benatti, and A. De Flora.
1996.
Synthesis of GDP-L-fucose by the human FX protein.
J. Biol. Chem.
271:27274-27279[Abstract/Free Full Text].
|
| 34.
|
Utterback, T. R.,
L. A. McDonald, and R. A. Fuldner.
1995.
A reliable, efficient protocol for 96-well plasmid DNA miniprep with rapid DNA quantification for high-throughput automated DNA sequencing.
Genome Sci. Technol.
1:1-8.
|
| 35.
|
Whitfield, C.
1995.
Biosynthesis of lipopolysaccharide O antigens.
Trends Microbiol.
3:178-185[Medline].
|
| 36.
|
Whittam, T. S.,
H. Ochman, and R. K. Selander.
1983.
Multilocus genetic structure in natural populations of Escherichia coli.
Proc. Natl. Acad. Sci. USA
80:1751-1755[Abstract/Free Full Text].
|
| 37.
|
Whittam, T. S.,
I. K. Wachsmuth, and R. A. Wilson.
1988.
Genetic evidence of clonal descent of Escherichia coli O157:H7 associated with hemorrhagic colitis and hemolytic uremic syndrome.
J. Infect. Dis.
157:1124-1133[Medline].
|
| 38.
|
Whittam, T. S., and R. A. Wilson.
1988.
Genetic relationships among pathogenic Escherichia coli of serogroup O157.
Infect. Immun.
56:2467-2473[Abstract/Free Full Text].
|
| 39.
|
Whittam, T. S., and R. A. Wilson.
1988.
Genetic relationships among pathogenic strains of avian Escherichia coli.
Infect. Immun.
56:2458-2466[Abstract/Free Full Text].
|
| 40.
|
Whittam, T. S.,
M. L. Wolfe,
I. K. Wachsmuth,
F. Ørskov,
I. Ørskov, and R. A. Wilson.
1993.
Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea.
Infect. Immun.
61:1619-1629[Abstract/Free Full Text].
|
| 41.
|
Xiang, S. H.,
M. Hobbs, and P. R. Reeves.
1994.
Molecular analysis of the rfb gene cluster of a group D2 Salmonella enterica strain: evidence for its origin from an insertion sequence-mediated recombination event between group E and D1 strains.
J. Bacteriol.
176:4357-4365[Abstract/Free Full Text].
|
| 42.
|
Zhang, L.,
J. Radziejewska-Lebrecht,
D. Krajewska-Pietrasik,
P. Toivanen, and M. Skurnik.
1997.
Molecular and chemical characterization of the lipopolysaccharide O-antigen and its role in the virulence of Yersinia enterocolitica serotype O8.
Mol. Microbiol.
23:63-76[Medline].
|
| 43.
|
Zhao, S.,
C. H. Sandt,
G. Feulner,
D. A. Vlazny,
J. A. Gray, and C. W. Hill.
1993.
rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories.
J. Bacteriol.
175:2799-2808[Abstract/Free Full Text].
|
Infect Immun, August 1998, p. 3545-3551, Vol. 66, No. 8
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Sheng, H., Lim, J. Y., Watkins, M. K., Minnich, S. A., Hovde, C. J.
(2008). Characterization of an Escherichia coli O157:H7 O-Antigen Deletion Mutant and Effect of the Deletion on Bacterial Persistence in the Mouse Intestine and Colonization at the Bovine Terminal Rectal Mucosa. Appl. Environ. Microbiol.
74: 5015-5022
[Abstract]
[Full Text]
-
Wu, G., Carter, B., Mafura, M., Liebana, E., Woodward, M. J., Anjum, M. F.
(2008). Genetic Diversity among Escherichia coli O157:H7 Isolates and Identification of Genes Linked to Human Infections. Infect. Immun.
76: 845-856
[Abstract]
[Full Text]
-
Fitzgerald, C., Collins, M., van Duyne, S., Mikoleit, M., Brown, T., Fields, P.
(2007). Multiplex, Bead-Based Suspension Array for Molecular Determination of Common Salmonella Serogroups. J. Clin. Microbiol.
45: 3323-3334
[Abstract]
[Full Text]
-
Wang, W., Perepelov, A. V., Feng, L., Shevelev, S. D., Wang, Q., Senchenkova, S. N., Han, W., Li, Y., Shashkov, A. S., Knirel, Y. A., Reeves, P. R., Wang, L.
(2007). A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure. Microbiology
153: 2159-2167
[Abstract]
[Full Text]
-
Han, W., Liu, B., Cao, B., Beutin, L., Kruger, U., Liu, H., Li, Y., Liu, Y., Feng, L., Wang, L.
(2007). DNA Microarray-Based Identification of Serogroups and Virulence Gene Patterns of Escherichia coli Isolates Associated with Porcine Postweaning Diarrhea and Edema Disease. Appl. Environ. Microbiol.
73: 4082-4088
[Abstract]
[Full Text]
-
Cunneen, M. M., Reeves, P. R.
(2007). The Yersinia kristensenii O11 O-Antigen Gene Cluster was Acquired by Lateral Gene Transfer and Incorporated at a Novel Chromosomal Locus. Mol Biol Evol
24: 1355-1365
[Abstract]
[Full Text]
-
Lehrer, J., Vigeant, K. A., Tatar, L. D., Valvano, M. A.
(2007). Functional Characterization and Membrane Topology of Escherichia coli WecA, a Sugar-Phosphate Transferase Initiating the Biosynthesis of Enterobacterial Common Antigen and O-Antigen Lipopolysaccharide. J. Bacteriol.
189: 2618-2628
[Abstract]
[Full Text]
-
Beutin, L., Strauch, E.
(2007). Identification of Sequence Diversity in the Escherichia coli fliC Genes Encoding Flagellar Types H8 and H40 and Its Use in Typing of Shiga Toxin-Producing E. coli O8, O22, O111, O174, and O179 Strains. J. Clin. Microbiol.
45: 333-339
[Abstract]
[Full Text]
-
Beutin, L., Wang, Q., Naumann, D., Han, W., Krause, G., Leomil, L., Wang, L., Feng, L.
(2007). Relationship between O-antigen subtypes, bacterial surface structures and O-antigen gene clusters in Escherichia coli O123 strains carrying genes for Shiga toxins and intimin. J Med Microbiol
56: 177-184
[Abstract]
[Full Text]
-
Feng, L., Perepelov, A. V., Zhao, G., Shevelev, S. D., Wang, Q., Senchenkova, S. N., Shashkov, A. S., Geng, Y., Reeves, P. R., Knirel, Y. A., Wang, L.
(2007). Structural and genetic evidence that the Escherichia coli O148 O antigen is the precursor of the Shigella dysenteriae type 1 O antigen and identification of a glucosyltransferase gene. Microbiology
153: 139-147
[Abstract]
[Full Text]
-
Li, Y., Liu, D., Cao, B., Han, W., Liu, Y., Liu, F., Guo, X., Bastin, D. A., Feng, L., Wang, L.
(2006). Development of a Serotype-Specific DNA Microarray for Identification of Some Shigella and Pathogenic Escherichia coli Strains. J. Clin. Microbiol.
44: 4376-4383
[Abstract]
[Full Text]
-
Beutin, L., Kong, Q., Feng, L., Wang, Q., Krause, G., Leomil, L., Jin, Q., Wang, L.
(2005). Development of PCR Assays Targeting the Genes Involved in Synthesis and Assembly of the New Escherichia coli O174 and O177 O Antigens. J. Clin. Microbiol.
43: 5143-5149
[Abstract]
[Full Text]
-
DebRoy, C., Fratamico, P. M., Roberts, E., Davis, M. A., Liu, Y.
(2005). Development of PCR Assays Targeting Genes in O-Antigen Gene Clusters for Detection and Identification of Escherichia coli O45 and O55 Serogroups. Appl. Environ. Microbiol.
71: 4919-4924
[Abstract]
[Full Text]
-
John, M., Kudva, I. T., Griffin, R. W., Dodson, A. W., McManus, B., Krastins, B., Sarracino, D., Progulske-Fox, A., Hillman, J. D., Handfield, M., Tarr, P. I., Calderwood, S. B.
(2005). Use of In Vivo-Induced Antigen Technology for Identification of Escherichia coli O157:H7 Proteins Expressed during Human Infection. Infect. Immun.
73: 2665-2679
[Abstract]
[Full Text]
-
Beutin, L., Tao, J., Feng, L., Krause, G., Zimmermann, S., Gleier, K., Xia, Q., Wang, L.
(2005). Sequence Analysis of the Escherichia coli O15 Antigen Gene Cluster and Development of a PCR Assay for Rapid Detection of Intestinal and Extraintestinal Pathogenic E. coli O15 Strains. J. Clin. Microbiol.
43: 703-710
[Abstract]
[Full Text]
-
Feng, L., Senchenkova, S. N., Tao, J., Shashkov, A. S., Liu, B., Shevelev, S. D., Reeves, P. R., Xu, J., Knirel, Y. A., Wang, L.
(2005). Structural and Genetic Characterization of Enterohemorrhagic Escherichia coli O145 O Antigen and Development of an O145 Serogroup-Specific PCR Assay. J. Bacteriol.
187: 758-764
[Abstract]
[Full Text]
-
Marolda, C. L., Vicarioli, J., Valvano, M. A.
(2004). Wzx proteins involved in biosynthesis of O antigen function in association with the first sugar of the O-specific lipopolysaccharide subunit. Microbiology
150: 4095-4105
[Abstract]
[Full Text]
-
Samuel, G., Hogbin, J.-P., Wang, L., Reeves, P. R.
(2004). Relationships of the Escherichia coli O157, O111, and O55 O-Antigen Gene Clusters with Those of Salmonella enterica and Citrobacter freundii, Which Express Identical O Antigens. J. Bacteriol.
186: 6536-6543
[Abstract]
[Full Text]
-
Feng, L., Wang, W., Tao, J., Guo, H., Krause, G., Beutin, L., Wang, L.
(2004). Identification of Escherichia coli O114 O-Antigen Gene Cluster and Development of an O114 Serogroup-Specific PCR Assay. J. Clin. Microbiol.
42: 3799-3804
[Abstract]
[Full Text]
-
Feng, L., Senchenkova, S. N., Yang, J., Shashkov, A. S., Tao, J., Guo, H., Cheng, J., Ren, Y., Knirel, Y. A., Reeves, P. R., Wang, L.
(2004). Synthesis of the Heteropolysaccharide O Antigen of Escherichia coli O52 Requires an ABC Transporter: Structural and Genetic Evidence. J. Bacteriol.
186: 4510-4519
[Abstract]
[Full Text]
-
DebRoy, C., Roberts, E., Kundrat, J., Davis, M. A., Briggs, C. E., Fratamico, P. M.
(2004). Detection of Escherichia coli Serogroups O26 and O113 by PCR Amplification of the wzx and wzy Genes. Appl. Environ. Microbiol.
70: 1830-1832
[Abstract]
[Full Text]
-
Maki, M., Renkonen, R.
(2004). Biosynthesis of 6-deoxyhexose glycans in bacteria. Glycobiology
14: 1R-15R
[Abstract]
[Full Text]
-
Feng, L., Senchenkova, S.'y. N., Yang, J., Shashkov, A. S., Tao, J., Guo, H., Zhao, G., Knirel, Y. A., Reeves, P., Wang, L.
(2004). Structural and Genetic Characterization of the Shigella boydii Type 13 O Antigen. J. Bacteriol.
186: 383-392
[Abstract]
[Full Text]
-
Fitzgerald, C., Sherwood, R., Gheesling, L. L., Brenner, F. W., Fields, P. I.
(2003). Molecular Analysis of the rfb O Antigen Gene Cluster of Salmonella enterica Serogroup O:6,14 and Development of a Serogroup-Specific PCR Assay. Appl. Environ. Microbiol.
69: 6099-6105
[Abstract]
[Full Text]
-
Fratamico, P. M., Briggs, C. E., Needle, D., Chen, C.-Y., DebRoy, C.
(2003). Sequence of the Escherichia coli O121 O-Antigen Gene Cluster and Detection of Enterohemorrhagic E. coli O121 by PCR Amplification of the wzx and wzy Genes. J. Clin. Microbiol.
41: 3379-3383
[Abstract]
[Full Text]
-
Tatsuno, I., Nagano, K., Taguchi, K., Rong, L., Mori, H., Sasakawa, C.
(2003). Increased Adherence to Caco-2 Cells Caused by Disruption of the yhiE and yhiF Genes in Enterohemorrhagic Escherichia coli O157:H7. Infect. Immun.
71: 2598-2606
[Abstract]
[Full Text]
-
Pacinelli, E., Wang, L., Reeves, P. R.
(2002). Relationship of Yersinia pseudotuberculosis O Antigens IA, IIA, and IVB: the IIA Gene Cluster Was Derived from That of IVB. Infect. Immun.
70: 3271-3276
[Abstract]
[Full Text]
-
Wang, L., Huskic, S., Cisterne, A., Rothemund, D., Reeves, P. R.
(2002). The O-Antigen Gene Cluster of Escherichia coli O55:H7 and Identification of a New UDP-GlcNAc C4 Epimerase Gene. J. Bacteriol.
184: 2620-2625
[Abstract]
[Full Text]
-
Wang, L., Qu, W., Reeves, P. R.
(2001). Sequence Analysis of Four Shigella boydii O-Antigen Loci: Implication for Escherichia coli and Shigella Relationships. Infect. Immun.
69: 6923-6930
[Abstract]
[Full Text]
-
Awram, P., Smit, J.
(2001). Identification of lipopolysaccharide O antigen synthesis genes required for attachment of the S-layer of Caulobacter crescentus. Microbiology
147: 1451-1460
[Abstract]
[Full Text]
-
Jiang, S.-M., Wang, L., Reeves, P. R.
(2001). Molecular Characterization of Streptococcus pneumoniae Type 4, 6B, 8, and 18C Capsular Polysaccharide Gene Clusters. Infect. Immun.
69: 1244-1255
[Abstract]
[Full Text]
-
Jensen, S. O., Reeves, P. R.
(2001). Molecular evolution of the GDP-mannose pathway genes (manB and manC) in Salmonella enterica. Microbiology
147: 599-610
[Abstract]
[Full Text]
-
Tarr, P. I., Schoening, L. M., Yea, Y.-L., Ward, T. R., Jelacic, S., Whittam, T. S.
(2000). Acquisition of the rfb-gnd Cluster in Evolution of Escherichia coli O55 and O157. J. Bacteriol.
182: 6183-6191
[Abstract]
[Full Text]
-
Shepherd, J. G., Wang, L., Reeves, P. R.
(2000). Comparison of O-Antigen Gene Clusters of Escherichia coli (Shigella) Sonnei and Plesiomonas shigelloides O17: Sonnei Gained Its Current Plasmid-Borne O-Antigen Genes from P. shigelloides in a Recent Event. Infect. Immun.
68: 6056-6061
[Abstract]
[Full Text]
-
Wang, L., Reeves, P. R.
(2000). The Escherichia coli O111 and Salmonella enterica O35 Gene Clusters: Gene Clusters Encoding the Same Colitose-Containing O Antigen Are Highly Conserved. J. Bacteriol.
182: 5256-5261
[Abstract]
[Full Text]
-
Wang, L., Rothemund, D., Curd, H., Reeves, P. R.
(2000). Sequence Diversity of the Escherichia coli H7 fliC Genes: Implication for a DNA-Based Typing Scheme for E. coli O157:H7. J. Clin. Microbiol.
38: 1786-1790
[Abstract]
[Full Text]
-
Dunwell, J. M., Khuri, S., Gane, P. J.
(2000). Microbial Relatives of the Seed Storage Proteins of Higher Plants: Conservation of Structure and Diversification of Function during Evolution of the Cupin Superfamily. Microbiol. Mol. Biol. Rev.
64: 153-179
[Abstract]
[Full Text]
-
Feldman, M. F., Marolda, C. L., Monteiro, M. A., Perry, M. B., Parodi, A. J., Valvano, M. A.
(1999). The Activity of a Putative Polyisoprenol-linked Sugar Translocase (Wzx) Involved in Escherichia coli O Antigen Assembly Is Independent of the Chemical Structure of the O Repeat. J. Biol. Chem.
274: 35129-35138
[Abstract]
[Full Text]
-
Paton, A. W., Paton, J. C.
(1999). Molecular Characterization of the Locus Encoding Biosynthesis of the Lipopolysaccharide O Antigen of Escherichia coli Serotype O113. Infect. Immun.
67: 5930-5937
[Abstract]
[Full Text]
-
Vinuesa, P., Reuhs, B. L., Breton, C., Werner, D.
(1999). Identification of a Plasmid-Borne Locus in Rhizobium etli KIM5s Involved in Lipopolysaccharide O-Chain Biosynthesis and Nodulation of Phaseolus vulgaris. J. Bacteriol.
181: 5606-5614
[Abstract]
[Full Text]
-
Kudva, I. T., Jelacic, S., Tarr, P. I., Youderian, P., Hovde, C. J.
(1999). Biocontrol of Escherichia coli O157 with O157-Specific Bacteriophages. Appl. Environ. Microbiol.
65: 3767-3773
[Abstract]
[Full Text]
-
Marolda, C. L., Feldman, M. F., Valvano, M. A.
(1999). Genetic organization of the O7-specific lipopolysaccharide biosynthesis cluster of Escherichia coli VW187 (O7:K1). Microbiology
145: 2485-2495
[Abstract]
[Full Text]
-
Maurer, J. J., Schmidt, D., Petrosko, P., Sanchez, S., Bolton, L., Lee, M. D.
(1999). Development of Primers to O-Antigen Biosynthesis Genes for Specific Detection of Escherichia coli O157 by PCR. Appl. Environ. Microbiol.
65: 2954-2960
[Abstract]
[Full Text]
-
Wang, L., Curd, H., Qu, W., Reeves, P. R.
(1998). Sequencing of Escherichia coli O111 O-Antigen Gene Cluster and Identification of O111-Specific Genes. J. Clin. Microbiol.
36: 3182-3187
[Abstract]
[Full Text]