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Infect Immun, August 1998, p. 3736-3743, Vol. 66, No. 8
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Regulation of Sucrose-6-Phosphate Hydrolase Activity in
Streptococcus mutans: Characterization of the
scrR Gene
Koichi
Hiratsuka,
Bing
Wang,
Yutaka
Sato,
and
Howard
Kuramitsu*
Department of Oral Biology, State University
of New York, Buffalo, New York 14214
Received 10 November 1997/Returned for modification 18 February
1998/Accepted 22 May 1998
 |
ABSTRACT |
Previous results have implicated an important role for the enzyme
IIScr, the sucrose-specific permease, in the transport of
sucrose by cariogenic Streptococcus mutans. The product of
the scrB gene, sucrose-6-phosphate hydrolase (Suc-6PH), is
required for the metabolism of phosphorylated sucrose. The results from
the utilization of scrB::lacZ fusions
in S. mutans GS-5 have suggested that sucrose-grown cells
have higher levels of scrB gene expression than do cells grown with glucose or fructose. Northern blot analysis of
scrB transcripts has also confirmed the relative strengths
of expression as sucrose>glucose>fructose. Immediately downstream
from the scrB gene, an open reading frame with homology to
regulatory proteins of the GalR-LacI family as well as to ScrR proteins
from several other bacteria has been identified. In addition, this gene
appears to be transcribed in the same operon as scrB.
Inactivation of this gene, scrR, did not alter the relative
expression of the scrB gene in the presence of sucrose or
fructose but did increase SUC-6PH levels in the presence of glucose to
that observed with sucrose. Furthermore, the S. mutans ScrR
homolog appears to bind to the scrB promoter region as
determined from the results of gel shift assays. These results suggest
that the scrR gene is involved in the regulation of
scrB, and likely scrA, expression. However, it
is not clear whether sucrose acts as an inducer of expression of these
genes or, alternatively, whether glucose and fructose act as
repressors.
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INTRODUCTION |
The role of dietary sucrose and
mutans streptococci, particularly Streptococcus mutans, in
the development of human dental caries has been well documented
(14). Sucrose is required by these organisms for the
synthesis of insoluble glucans, which play an important role in the
colonization of tooth surfaces leading to dental plaque formation.
However, under certain conditions, a portion of the sucrose metabolized
by the mutans streptococci appears to be converted to fermentation end
products such as lactic acid (32). This process likely
involves the initial transport of sucrose into the cells by the sucrose
phosphoenolpyruvate-dependent phosphotransferase system (PTS)
(28). In addition, alternate pathways for sucrose transport
into S. mutans have also been identified (19, 20)
and may be prominent under certain environmental conditions as proposed
earlier (14).
The sucrose PTS converts sucrose to sucrose-6-phosphate, which is then
hydrolyzed to fructose and glucose-6-phosphate, the reaction being
catalyzed by the product of the scrB gene,
sucrose-6-phosphate hydrolase (Suc-6PH) (10, 15). These
sugars can then be metabolized to lactic acid through the classical
fermentation pathways of the homofermentative streptococci
(32). However, it is likely that an alternate sucrose
transport system is involved in lactic acid production under rapid
growth conditions (7a). Recent results (24) have
indicated that the expression of the scrA gene encoding the
enzyme IIScr (EnzIIScr) of the sucrose PTS is
induced in the presence of sucrose rather than of glucose or fructose.
However, a similar analysis of the regulation of scrB
expression utilizing reporter gene constructs has not yet been carried
out. Earlier results have suggested that this gene may be inducible by
sucrose in S. mutans (9, 31). However, this
conclusion was based upon nonspecific Suc-6PH (previously termed
invertase) assays which could be confounded by the glucosyltransferase (Gtf), fructosyltransferase, and fructanase activities known to be
expressed by these organisms (13). However, subsequent
utilization of a more specific Suc-6PH assay did confirm that the
Suc-6PH activity in the presence of sucrose was elevated relative to
that in the presence of fructose and glucose by an unknown mechanism in
the mutans streptococci (30). Furthermore, in view of the demonstration that the scrA and scrB genes are
tandemly arranged on the S. mutans GS-5 chromosome but are
transcribed from opposite DNA strands (23), it was of
interest to examine the regulation of expression of the scrB
gene.
The present results with specific
scrB::lacZ fusions demonstrate that the
regulation of scrB expression is similar to that previously
demonstrated for the scrA gene (24). In addition, a novel regulatory gene, scrR, has been identified
immediately downstream from scrB within the same operon.
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MATERIALS AND METHODS |
Bacterial strains.
S. mutans GS-5, its spontaneous
colonization-defective mutant SP2 (18), and the Gtf mutant
strain SP2
gtfBCD (27a) were maintained and
grown in Todd-Hewitt broth (THB; Gibco BRL, Grand Island, N.Y.) or TYNa
(1% Bacto tryptone, 0.5% Bacto yeast extract, and 0.4%
Na2HPO4) broth. This latter growth medium is
sugar deficient and allows only minimal growth (<10% of that of
sugar-supplemented cultures) in the absence of exogenous sugars
(24). S. mutans V1355 with an inactivated
scrB gene (15) was obtained from F. Macrina
(Virginia Commonwealth University, Richmond). Transformants of S. mutans were selected following growth on THB agar plates supplemented with erythromycin (10 µg/ml) or tetracycline (8 µg/ml).
DNA manipulations.
DNA isolation, endonuclease restriction,
ligation, and transformation of competent Escherichia coli
cells were carried out as previously described (1, 21) while
transformation of S. mutans was accomplished by procedures
routinely carried out in this laboratory (18). Nucleotide
sequencing and sequence analysis were carried out as indicated earlier
(23).
Construction of scrB::lacZ
fusion plasmids.
Plasmid pPV5 containing the scrB gene
has been described earlier (22). A 10-bp SalI
linker was inserted into the NruI site which is present at
position 728 of the published scrB nucleotide sequence
(22) for constructing plasmid pSD10. The promoterless lacZ SalI cartridge was excised from the pMC1871 fusion
vector (Pharmacia Biotech, Piscataway, N.J.) and inserted in frame into the SalI site of pSB10 (see Fig. 1). A
scrB::lacZ fusion fragment digested
with PstI and KpnI from pSBL10 was treated with
T4 DNA polymerase to obtain blunt ends and ligated to
PvuII-digested pResEmPvu (27) with T4 ligase. The
resultant plasmid, pSDL20, was used to transform S. mutans
SP2, and one selected transformant, designated SP2C4, was used for
further study.
Construction of the scrR-defective mutants.
Plasmid pSYZ4 (21a), containing the 5' and 3' ends of the
scrR (previously designated ds1,
[23]) gene as well as the tetracycline (derived from
Tn916) and kanamycin resistance genes (27),
served as the source of the former gene. The plasmid was linearized by digestion with EcoRI and used to transform S. mutans SP2C4 such that the resultant scrR mutant
(Tetr) was designated SP2CL1. In order to remove the 400-bp
fragment of scrR which could express the N-terminal domain
of the ScrR protein from the latter construct, an additional
scrR mutant was constructed. Chromosomal DNA from SP2CL1 was
used to transform strain SP2, and colonies were isolated on Trypticase
soy (Difco Laboratories, Detroit, Mich.) agar plates containing
tetracycline (10 µg/ml) and erythromycin (10 µg/ml). The resultant
mutant, SP2
scrR, lacks the lacZ' reporter gene
and the additional 5' scrR fragment present in SP2CL1.
Preparation of the labeled scrB PCR probe.
For
Southern and Northern blot analyses, a 1,112-bp probe containing the
scrB region was prepared and labeled by PCR amplification with pPV5 as the template with primers ScrBORF-F
(5'-TCGCCGCTATCAAGATTGGAC-3'; nucleotides 258 to 278 in the
scrB sequence [22]) and ScrBORF-R (5'-GCGATCGATCAGAATGGTTCC-3'; nucleotides 1348 to 1369 in
the scrB sequence) and digoxigenin-dUTP with the PCR DIG
labeling kit (Boehringer Mannheim Biochemicals, Indianapolis, Ind.).
PCR conditions were as follows: denaturation for 5 min at 95°C and 30 cycles of 30 s each at 94°C, 1 min at 55°C, and 1.5 min at 72°C, followed by 7 min at 72°C in a thermal cycler (Perkin-Elmer Cetus Corp., Norwalk, Conn.). Amplified products were purified by the
Wizard PCR-Prep System (Promega Corp., Madison, Wis.).
Southern blot analysis.
One microgram of genomic DNA was
digested with EcoRI or EcoRV, and the DNA
fragments were separated by electrophoresis on 1% Tris-acetate-EDTA
agarose gels, transferred to nylon membranes (Hybond-N+;
Amersham International, Little Chalfont, United Kingdom) with 0.4 N
NaOH for 3 h, and fixed with a UV Stratalinker 2400 (Stratagene, La Jolla, Calif.). The blots were hybridized with the
digoxigenin-labeled PCR probe at 50°C. Hybridization and detection
were performed in accordance with the manufacturer's protocol
(Boehringer Mannheim).
Extraction of RNA.
Total RNA was isolated from 15 ml of
log-phase cell cultures. After centrifugation, the cells were suspended
with 0.3 ml of diethylpyrocarbonate-treated water. The samples were
transferred to FastRNA tubes with blue caps (Bio 101, Vista, Calif.),
and 0.9 ml of TRIzol reagent (Gibco BRL) was then added. Cells were broken by a FastPREP FP120 homogenizer (Bio 101) at a speed setting of
6.0 for 30 s. After samples stood on ice for 2 min, 0.2 ml of
chloroform was added and the tubes were vortexed for 1 min. The
mixtures were then placed at room temperature for 2 min and centrifuged
at 12,000 × g for 5 min at 4°C, 0.5 ml of chloroform was added to the supernatant fluids, and the mixtures were vortexed and
centrifuged again as described above. RNA was finally precipitated from
the aqueous phase with isopropanol, and the resulting pellets were
dried and resuspended in 20 µl of diethylpyrocarbonate-treated water.
Northern blot analysis.
A quantity (4.5 µl) of RNA (15 µg) was mixed with 15.5 µl of sample buffer (2.0 µl of 10× MOPS
[morpholinepropanesulfonic acid], 3.5 µl of 37% [vol/vol]
formaldehyde, 10 µl of formamide) and denatured at 65°C for 10 min.
After dye solution was added, the RNA fragments were separated by
electrophoresis in 1% agarose gels containing 3% formaldehyde at
4°C. The gel was washed with 20× SSC (1× SSC is 0.15 M NaCl plus
0.015 M sodium citrate) for 15 min twice to remove formaldehyde, and
blotting was carried out with 20× SSC overnight. The blotted membrane
was washed with dH2O twice for 5 min and fixed by UV
cross-linking. Hybridization was then carried out with 50%
formamide-0.5% sodium dodecyl sulfate-5× SSC-10× Denhardt's
solution-10 mM Na2HPO4 (pH 6.5)-salmon sperm DNA (0.1 mg/ml)-digoxigenin-labeled PCR probe at 50°C.
Primer extension analysis.
Total RNA was prepared as
described above, and primer extension (11) was carried out
with a [32P]dATP (DuPont NEN, Boston, Mass.)-labeled
oligonucleotide primer complementary to the 5' end of the gene
(5'-GGTTCTATATGATACGTTGTA-3'; nucleotides 330 to 350 in the
scrB sequence) and reverse transcriptase (Superscript II;
Gibco BRL). Nucleotide sequencing of the region was carried out in
parallel as described above with the same primer.
Gel mobility shift assays.
A 215-bp DNA fragment
corresponding to nucleotides 19 to 235 (22) containing the
scrA and scrB promoter region was amplified by
PCR primers (5'-CTACTTTGCTATAATCCATTTGC-3' and
5'-CATCGTTTATCTACTCCTAATAA-3') and 5' end labeled with
32P with T4 polynucleoside kinase (Gibco BRL). The mobility
shift assays were carried out essentially as previously described
(6) with 2 to 20 µg of DNA probe (10,000 to 20,000 cpm)
and by incubation with the protein samples in 20 µl of reaction
buffer (12% glycerol, 12 mM HEPES-NaOH [pH 7.9], 4 mM Tris-HCl [pH
7.9], 60 mM KCl, 1.0 mM EDTA, 1.0 mM dithiothreitol) at 30°C for 15 min. After incubation, the samples were electrophoresed on 5%
polyacrylamide gels and then subjected to autoradiography. For the
specificity assays, potential competitors were added on a weight basis
relative to the labeled probe.
Reverse transcription-PCR (RT-PCR).
RNA from S. mutans SP2 was prepared as described above, and RT-PCR was carried
out with Superscript II (Gibco BRL) and Vent DNA polymerase (New
England Biolabs, Beverly, Mass.) as previously described with 35 cycles
(denaturation at 94°C for 1 min, annealing at 55°C for 2 min, and
extension at 72°C for 2 min) (2). Four synthetic
oligonucleotide primers (B-RT1, 5'-ACAACAGTCTCTTTTGCTTGG-3'; B-RT2a, 5'-TCCTGATGGCCGTGTTTATGC-3'; R-RT1,
5'-GAAAACTCTAGGATACAAGCC-3'; and scrR1,
5'-GAAAACTCTAGGATACAAGCC-3') were used as three primer pairs
as described in the text.
Determination of
-galactosidase activity.
S. mutans
scrB::lacZ constructs which were precultured
overnight in TYNa broth without added sugars were grown in the same broth containing the indicated sugars (1%) into the mid-log phase. Maximum expression of both scrA and scrB occurred
at approximately 0.4% glucose or fructose levels, and therefore, 1%
levels were chosen for all of the experiments described in this study.
Under these conditions, little or no growth was detected in the absence of exogenous carbohydrate addition. Cultures were then centrifuged, and
the cell pellets were washed and resuspended with Z buffer (60 mM
Na2PO4, 40 mM NaH2PO4,
10 mM KCl, 1.0 mM MgSO4, 50 mM
-mercaptoethanol, pH 7.0)
at an optical density at 600 nm of 0.93 to 0.95.
-Galactosidase activities were determined with
o-nitrophenyl-
-galactoside (ONPG) as follows. The cell
suspension (0.1 ml) and 0.9 ml of Z buffer were added to FastRNA tubes.
After standing on ice for 30 min, the cells were disrupted by a
homogenizer (FastPREP) at a speed setting of 6.0 for 30 s. The
samples were then equilibrated at 28°C for 15 min, and 0.2 ml of ONPG
(4 mg of ONPG/ml in Z buffer) was next added. The cells were incubated
at 28°C for 30 min, and the reactions were terminated by addition of
0.5 ml of 1 M Na2CO3. After being mixed well,
the samples were then centrifuged at 12,000 × g for 10 min and the optical density at 420 nm of the supernatant fluids was
measured spectrophotometrically. All reactions were carried out in
triplicate, and the data presented are the averages of the
determinations. The units of activity were determined as described
earlier (16).
Nucleotide sequence accession number.
The nucleotide
sequence of the scrR gene is available from the GenBank
database under accession no. U46902.
 |
RESULTS |
Construction of scrB::lacZ fusion
strains.
In order to develop a system for monitoring specific
scrB expression, S. mutans SP2 strains containing
scrB::lacZ translational fusions were
constructed. The promoterless lacZ gene derived from plasmid
pMC1871 was introduced in frame into the scrB gene of plasmid pPV5 (Fig. 1). A blunt-ended
fragment from the resulting plasmid, pSBL10, was then introduced into
the streptococcal suicide vector pResEmPvu to construct pSBL20.
Transformation of S. mutans SP2 (a spontaneous GS-5 mutant
which is defective in insoluble glucan synthesis, eliminating
aggregation during growth in the presence of sucrose) with intact
circular pSBL20 resulted in integration of the plasmid into the SP2
chromosome following a Campbell-like integration event. This resulted
in the formation of two copies of the scrB gene: one
containing the lacZ fusion and one intact copy of the gene.
The latter allows for growth of the construct, SP2C4, in the presence
of sucrose since the disaccharide is toxic to cells lacking Suc-6PH
activity (15). Transformants selected on THB-erythromycin
agar plates containing X-Gal
(5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside) allowed for convenient isolation of the proper constructs.

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FIG. 1.
Construction of pSBL20. A 3.1-kb lacZ
cartridge from pMC1871 was inserted in frame into the scrB
gene of pSB10. A blunt-ended PstI-KpnI fragment
containing the scrB::lacZ fusion was
then cloned into the PvuII site of pResEmPvu.
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Confirmation of integration of pSBL20 into the SP2 chromosome was
obtained following Southern blot analysis of the transformants (data
not shown). Cleavage of SP2 and SP2C4 chromosomal DNA with EcoRI or EcoRV and analysis with an
scrB probe yielded the predicted fragments (SP2 yielded one
positive 6.6-kb fragment while the mutant SP2C4 expressed two bands, of
3.7 and 6.9 kb, following EcoRI digestion).
Regulation of scrB expression.
Since previous
results (24) indicated that another gene involved in sucrose
transport, scrA encoding EnzIIScr, was
differentially regulated by sugars, it was of interest to examine the
effects of various sugars which S. mutans would be expected
to encounter in the oral cavity on scrB expression. With SP2C4, it was demonstrated that maximal scrB expression was
detected when the cells were grown in the presence of sucrose (Fig.
2A). Expression was approximately twice
as high in the presence of sucrose as in that of glucose and almost
fivefold higher relative to growth in the presence of fructose. Growth
of the cells in the presence of sucrose plus glucose or sucrose plus
fructose resulted in scrB expression similar to that with
growth in the presence of glucose or fructose alone, respectively (data
not shown). In addition, growth of SP2C4 in the presence of either maltose or sorbitol resulted in a Suc-6PH level similar to that of
cells grown in the presence of fructose (data not shown). This latter
result is in contrast to previous studies indicating higher levels of
scrB expression in mannitol- or sorbitol-grown cells than
those in fructose-grown cells (30). Whether this difference is related to the utilization of distinct species of mutans
streptococci in these two studies is unknown at present.

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FIG. 2.
-Galactosidase activities of S. mutans
SP2C4 (scrB::lacZ) (A) and SP2CL1
(scrB::lacZ scrR mutant) (B). S. mutans strains were grown in TYNa broth with 1% sucrose, glucose,
or fructose as described in the text.
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Since bacteria present in dental plaque are subject to fluctuations in
pH influenced by the availability of nutrients (14), it was
of interest to determine the effects of acidity on scrB expression. The availability of S. mutans
scrA::lacZ constructs (24) also
allowed for a similar analysis of this gene. The results (Fig.
3) clearly indicated that the expression
of both the scrA and scrB genes was reduced under
acidic conditions, pH 5.6, relative to neutral pH. Thus, two of the key
enzymes involved in the major sucrose transport and metabolism system
of S. mutans appear to be down regulated under acidic growth
conditions.

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FIG. 3.
Relative -galactosidase activities of S. mutans IS3AZ4 (scrA::lacZ) and
SP2CL1 (scrB::lacZ) grown at different
pHs in 1% glucose. Each strain was inoculated into THB at pH 7.0 (A)
or pH 5.6 (B). Cells were harvested at mid-log phase, and the
activities were measured as described in the text. Relative activities
(percent) were calculated with the activity at pH 7.0 set at 100% for
each strain.
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Identification and characterization of the scrR
gene.
The apparent inducibility of the scrB gene with
different sugars suggested the presence of a scrB regulatory
gene on the S. mutans chromosome. Sequencing of the
scrB gene (22) revealed the presence of an open
reading frame (ORF) previously named ds1 immediately
downstream from the gene. Additional nucleotide sequencing (Fig.
4) confirmed the presence of a
significant ORF in this region. This putative gene would code for a
protein of approximately 35 kDa beginning at nucleotide position 61. A
potential Shine-Dalgarno sequence, AGG, which was present within the 3'
end of the scrB gene, was detected 5 nucleotides upstream of
the likely initiation codon. This suggested the possibility of
translational coupling of the scrB gene and the ORF. In
addition, no sequences similar to promoter sequences were identified in
the region upstream of the ds1 gene, and this suggested that
both genes may be present within the same operon.

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FIG. 4.
Nucleotide sequence of the scrR gene and the
deduced amino acid sequence. The putative Shine-Dalgarno sequence
(S.D.) and restriction enzyme sites are shown.
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A comparison of the deduced amino acid sequence of ds1 with the
National Biomedical Research Foundation protein database indicated that
extensive homology was observed between the S. mutans ds1 protein and the N-terminal regions of the GalR-LacI family
(17) of regulatory proteins (Fig.
5). However, this homology did not extend
beyond the N-terminal region. Since the N-terminal region of the
GalR-LacI family of regulatory proteins has been implicated in DNA
binding, these results suggested that the S. mutans ORF might also be involved in such interactions. Therefore, this ORF was
tentatively named scrR since it appeared to be a regulatory gene present in the same operon as scrB. Moreover, the
S. mutans ScrR protein exhibited homology with other
DNA-binding proteins including the DegA regulatory protein of
Bacillus subtilis (32% identity [4]), as
well as the ScrR proteins of Staphylococcus xylosus
(8) and Klebsiella pneumoniae (12),
with 25 and 26% identity, respectively. In addition, the S. mutans gene is highly homologous (50.8% identity) with that for
the recently identified ScrR protein from Pediococcus
pentosaceus (SwissProt accession no. P43472).
Role of ScrR in the regulation of ScrB expression.
In order to
determine if ScrR plays a role as a regulatory protein in affecting
scrB expression, an ScrR mutant was constructed. For this
purpose, an RsaI Tetr gene cassette was
introduced into the scrR gene to produce plasmid pSYZ4 (Fig.
6). Linearization of plasmid pSYZ4 with
EcoRI and transformation of strain SP2C4 resulted in the
introduction of the Tetr gene into the S. mutans
chromosome following a double-crossover recombination event.
Tetr transformants were then analyzed for the predicted
integration event following Southern blot analysis (data not shown).
With an scrB gene probe, it was demonstrated that the
predicted hybridizing fragments were observed following cleavage of the
chromosomal DNA from one of the Tetr transformants, SP2CL1,
with either EcoRI or EcoRV (i.e.,
EcoRI produced 3.7- and 10.9-kb hybridizing bands compared
to 3.7- and 6.9-kb bands for SP2C4).

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FIG. 6.
Integration of linearized pSYZ4 into S. mutans (S.m.) SP2C4. Plasmid pSYZ4 containing the 5'
and 3' ends of scrR was linearized with EcoRI and
transformed into S. mutans SP2C4. The resultant
scrR mutant was designated SP2CL1. Abbreviations for
restriction endonuclease sites: EI, EcoRI; R,
RsaI; H, HindIII.
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Growth of strain SP2CL1 (scrB::lacZ
scrR::tet) in the presence of different
sugars (Fig. 2B) indicated that glucose and sucrose were equally
effective in inducing scrB expression relative to that with
fructose. Thus, inactivation of scrR appeared to increase the ability of glucose to elevate scrB expression relative
to that with sucrose and fructose. Alternatively, if glucose is a repressor of scrB expression, the scrR mutation
abolishes such repressive effects. Lactose, maltose, and sorbitol
behaved like fructose in affecting scrB expression in the
scrR mutant (data not shown).
Transcriptional regulation of scrB expression.
In
order to determine if the differential regulation of scrB
expression by the sugars occurs at the level of transcription, Northern
blot analysis was carried out (Fig. 7).
Two major mRNA bands corresponding to the scrB transcript of
2.37 and 1.35 kb were identified. The smaller species may represent
binding of the probe to rRNA or a degraded mRNA, although the distinct
size of this band suggests that the former possibility is more likely. It is also possible that this species could represent a product of
alternate transcription initiation or termination. The larger transcript is compatible in size with an mRNA containing both the
scrB and the scrR genes. Maximal expression of
the scrB transcript occurs in the presence of sucrose, lower
levels occur for cells grown in the presence of glucose, and only trace
amounts of mRNA occur in the presence of fructose. Cells cultured in
the absence of exogenous sugars (Fig. 7, lane 1) or sucrose-grown cells
of the scrB mutant V1355 (lane 5) displayed no detectable
levels of the transcripts. These results confirm those from the
translational fusion studies and further indicate that the sugars
affect scrB expression at the transcriptional level.
However, it is not clear whether these effects result from repression
or from induction by the sugars.

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FIG. 7.
Northern blot analysis of the S. mutans
SP2 gtfBCD RNA with a digoxigenin-labeled scrB
probe. The cells were grown in TYNa broth containing 1% sucrose (lane
2), glucose (lane 3), or fructose (lane 4). Cells inoculated without
any sugar (lane 1) and S. mutans V1355 cultured with sucrose
(lane 5) were used as negative controls. Arrow indicates
scrB transcript.
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Since the transcription start site for the scrB gene had not
yet been identified and such a determination might provide information regarding how the gene was regulated, primer extension analysis of the
scrB transcript was carried out (Fig.
8). The results clearly identified an A
residue at position 198 of the previously published scrB
sequence (22) as the initiation site. Based upon this
transcription start site, putative
10 (TACTAT) and
35
(TTGATT) regions were identified (see reference
22 for the scrB sequence). Neither of
these regions overlapped the deduced
10 and
35 regions of the
divergently transcribed scrA gene (10a).

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FIG. 8.
Primer extension analysis of the scrB gene. A
labeled 21-mer oligonucleotide primer complementary to nucleotides 330 to 350, 132 bp from the initiation codon of the scrB gene
(22), was used to define the transcription start site
indicated in lane 1. Asterisk indicates start site.
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RT-PCR analysis of transcription.
In order to confirm the
coexpression of the scrB and scrR genes, RT-PCR
analysis of the mRNA expressed by strain SP2 was carried out (Fig.
9). Primers B-RT1 and B-RT2a amplified a
400-bp fragment which is part of the scrB gene. Likewise,
primers R-RT1 and scrR amplified a small 140-bp fragment which is
internal to the scrR gene. In addition, primers R-RT1 and
B-RT2a amplified a 700-bp DNA fragment which could be synthesized only
if both genes were cotranscribed on a polycistronic message. Omission
of the reverse transcriptase from each reaction mixture indicated that
the amplified fragments were not produced from contaminating
chromosomal DNA. Interestingly, the more intense band for fragment A
compared to that for fragment C might be explained by the presence of a
shorter mRNA species in addition to the full-length
scrB-scrR transcript. However, additional experiments will
be necessary to determine if the 1.35-kb mRNA (Fig. 7) is responsible
for this difference.

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FIG. 9.
RT-PCR amplification of the scrB-scrR genes.
(Top) Diagrammatic representation of RT-PCR-amplified fragments.
(Bottom) Agarose gel patterns of amplified fragments. Lanes: 1, C
fragment (700 bp) amplified with primers B-RT2a and R-RT1; 2, B
fragment (140 bp) produced with primers R-RT1 and scrR; 3, A fragment
(400 bp) amplified with primers B-RT2a and B-RT1; 4, molecular size
markers.
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Gel mobility shift assays.
In order to confirm that the
scrR gene codes for a regulatory protein which may bind to
the scrB promoter region, gel shift assays were carried out.
Crude cell extracts of SP2 as well as of the scrR mutant
SP2
scrR were mixed with a DNA fragment containing the
promoter regions of both the scrB and the scrA
genes, and the mobilities of the fragments were determined (Fig.
10). The SP2 extract produced two
prominent shifted bands. However, the extract from the scrR
mutant demonstrated only the less mobile of the two bands. This
suggested that the more rapidly migrating shifted band represented a
complex of ScrR and the promoter fragment. The identity of the other
protein which binds the DNA fragment is unknown, but it could represent
RNA polymerase. The specificity of binding by the ScrR protein was
indicated by the inability of nonspecific DNA fragments (a fragment
from the S. mutans scrK [25] promoter
region, the S. mutans dgk structural gene
[35], or a fragment from the Treponema
denticola ATCC 35405 chromosome) to interfere with the formation
of the putative ScrR-DNA complex (Fig.
11). However, the band intensities of
the less mobile shifted band were decreased in the presence of the two
S. mutans DNA fragments but not the T. denticola
fragment. This latter result would be compatible with an S. mutans RNA polymerase-scrB promoter fragment complex in
the less mobile shifted band.

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|
FIG. 10.
Gel mobility shift assays with cell extracts of
S. mutans and the end-labeled 215-bp DNA fragment containing
the scrA and scrB promoter regions. Lanes: 1, no
protein added; 2, 0.5 µg of MBP-ScrR fusion protein; 3 to 6, 5, 10, 20, and 40 µg, respectively, of SP2 extract; 7 to 10, 5, 10, 20, and
40 µg, respectively, of extract from SP2 scrR.
Arrowheads: top, MBP-ScrR-scrA scrB fragment complex; second
from top, putative RNA polymerase-scrA scrB fragment
complex; second from bottom, ScrR-scrA scrB fragment
complex; bottom, labeled scrA scrB fragment.
|
|

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|
FIG. 11.
Specificity of gel mobility shift assays with extracts
of S. mutans. Lanes 1 to 8, crude extracts of SP2; lanes 9 to 15, crude extracts of SP2 scrR. Lanes: 1, no
competitor; 2, 10-fold excess of unlabeled promoter fragment relative
to labeled fragment; 3, 20-fold excess of promoter fragment; 4, 10-fold
excess of S. mutans scrK DNA fragment; 5, 20-fold excess of
scrK fragment; 6, 20-fold excess of fragment from T. denticola dBII; 7, 20-fold excess of T. denticola
fragment; 8, 10-fold excess of S. mutans dgk gene fragment;
9, no competitor; 10, 10-fold excess of scrB-scrA promoter
fragment; 11, 20-fold excess of scrB promoter fragment; 12, 10-fold excess of scrK fragment; 13, 20-fold excess of
scrK fragment; 14, 10-fold excess of T. denticola
fragment; 15, 20-fold excess of T. denticola fragment.
Arrowheads: top, putative RNA polymerase-scrA scrB fragment
complex; middle, ScrR-scrA scrB fragment complex; bottom,
scrA scrB fragment.
|
|
Attempts were made to examine the interaction of purified ScrR protein
with the scrA-scrB promoter region following expression of
MBP (maltose binding protein)-ScrR and transcarboxylase-ScrR fusion
proteins constructed as previously described for other S. mutans genes (26, 34). Although both fusion proteins
were readily expressed in E. coli and bound to the
scrB promoter fragment (Fig. 10), neither fusion protein
could be demonstrated to bind to the promoter fragment in a specific
manner (data not shown). This suggested that the fusion of ScrR to
either MBP or transcarboxylase altered the ability of the regulatory
protein to specifically bind to the scrB promoter fragment.
In addition, cleavage of the ScrR protein from the fusion proteins did
not result in the formation of a DNA-binding protein, probably due to
the propensity of DNA-binding proteins to aggregate when highly
expressed in E. coli (8).
 |
DISCUSSION |
Because of the pivotal role of dietary sucrose in the etiology of
human dental caries, the effect of this sugar on dental plaque
bacterial metabolism is of considerable interest. The results of
earlier studies have demonstrated that most of the sucrose metabolized
by cariogenic mutans streptococci is converted to lactic acid
(32). Since significant amounts of sucrose are taken up by
the cells by the sucrose PTS (28), the influence of the environment of the oral cavity on this system is clearly relevant to
cariogenesis. Because of the utilization of less specific assays in
earlier studies of sucrose metabolism by the mutans streptococci (9, 30, 31), it was not clear how sucrose influenced sucrose transport by the cells. Nevertheless, earlier studies with different strains of the mutans streptococci did suggest that higher
cell-associated invertase activities were observed for cells grown in
the presence of sucrose than for those grown with glucose or fructose
(9, 31). More recent results with specific gene fusion
technology (24) as well as the present results with the same
approach have confirmed that growth in the presence of sucrose results
in enhanced expression of two key enzymes in the major transport system
of the sugar: EnzIIScr and Suc-6PH. For both enzymes, the
relative strengths of expression in the presence of common sugars
present in the human oral cavity were demonstrated to be
sucrose>glucose>fructose. This confirms similar observations
made earlier with permeabilized cells of Streptococcus
sobrinus 6715 (30). Thus, as previously suggested (9, 30, 31), dietary sucrose appears to alter the expression of a major sucrose transport system in S. mutans. It should
also be noted that the relative strengths of expression of the
scrA and scrB genes by sucrose may be greater
than actually demonstrated since the multiple extracellular
glycosidases of the organism likely produce both glucose and fructose
during growth in the presence of the disaccharide. Since fructose
appears to repress the enhancing effects of sucrose, the sucrose
effects may be underestimated in these experiments. It is also of
interest that sucrose also appears to induce the expression of other
sucrose-metabolizing enzymes in S. mutans, such as
fructosyltransferase and the Gtfs (33).
Both in vitro and in vivo studies have indicated that plaque bacteria
are subjected to fluctuations in pH (14). Therefore, the
present demonstration (Fig. 3) that acidity appears to modulate the
expression of both scrA and scrB suggests that
such a mechanism could play a role as a feedback repression system.
Enhanced fermentation of sugars leading to lactic acid formation would
decrease the environmental pH, leading to repression of two key enzymes
involved in sucrose transport and metabolism. However, the present
results do not indicate whether such effects are directly dependent
upon pH or upon altered growth rates since acidic pHs decrease the growth rate of S. mutans.
It is of interest that, among the microorganisms able to transport and
metabolize sucrose, a variety of scr gene organizations and
regulatory mechanisms are apparent (29). However, only in the mutans streptococci (5, 23) are the scrA and
scrB gene homologs transcribed from opposite DNA strands.
For most bacteria, both genes are transcribed either within the same
operon or independently from the same DNA strand. In addition, a
variety of different regulatory gene arrangements have been
demonstrated. For B. subtilis, the regulatory
sacT gene involved in antitermination is found upstream of
the scrA and scrB homologs (7). For
the enterobacterial plasmid pUR2100 sucrose-metabolizing system, the
regulatory scrR gene is located immediately downstream from
the scrB gene but is expressed from its own promoter
(12). Likewise, the scrR gene of Vibrio
alginolyticus is transcribed from its own promoter divergently
from the scrA-scrK-scrB operon (3). Therefore, the S. mutans system appears to be unique in that the
scrR gene appears to be present in the same operon as one of
its target genes, scrB.
The present results together with recent studies (24)
indicate that both the S. mutans scrA and scrB
genes are similarly regulated by different sugars. In most other
bacteria, such regulation results from the presence of both genes
within the same operon (29). However, the mutans
streptococci also appear to be unique in that both genes are present in
divergently transcribed operons (5, 23). In the case of
S. sobrinus, this may result from the partial overlapping of
the scrA and scrB promoters (5). Primer extension analysis of the two genes from S. mutans
GS-5 (Fig. 8) (10a) indicates that the two promoters do not
overlap. A comparable scrR gene has not yet been identified
for S. sobrinus.
The present results suggest that sucrose (or one of its metabolites) is
involved in increased expression of the scrB and
scrA genes. A similar observation has been made for the
scr genes of S. xylosus (8). However,
for the K. pneumoniae and enteric pUR4000 systems
(12), fructose and fructose-1-phosphate appear to induce
scr gene expression. By contrast, fructose appears to repress scr gene expression in S. mutans.
Likewise, scr operator sequences were identified upstream of
the K. pneumoniae scrB gene (12), but comparable
sequences could not be detected upstream of either the S. mutans
scrA or scrB gene. A direct repeating sequence was
detected upstream of the scrB gene, including part of the
putative Shine-Dalgarno sequence (22), but its role in the
regulation of scrB expression remains to be determined.
Based upon the properties of other scrR genes
(29), together with the results of inactivating the strain
GS-5 scrR gene, it is likely that the scrR gene
acts as a repressor of the scrB operon. Likewise, the
present results suggest that ScrB binds in the intergenic region
between the scrA and scrB genes. According to
such a model, sucrose (or one of its metabolites) inactivates the
repressor better than do glucose derivatives. However, fructose metabolites apparently are not effective in inactivating the putative ScrR repressor. Since scrR mutants are still repressible
with fructose, another regulatory protein together with fructose
derivatives may also repress scrB expression. Alternatively,
both fructose and, to a lesser extent, glucose may act as corepressors
in conjunction with ScrR. Therefore, a complex system of regulation may
be involved in modulating the expression of a major sucrose transport
system in S. mutans.
 |
ACKNOWLEDGMENT |
This investigation was supported in part by grant DE03258 from
the National Institutes of Health.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department
of Oral Biology, SUNY, 3435 Main Street, Buffalo, NY 14214. Phone:
(716) 829-2068. Fax: (716) 829-3942. E-mail:
KURAMITS{at}ACSU.BUFFALO.EDU.
Present address: Department of Biochemistry, Nihon University
Dental School, Matsudo, Japan.
Present address: Department of Biochemistry, Tokyo Dental College,
Chiba City, Japan.
Editor: J. R. McGhee
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