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Infection and Immunity, September 1998, p. 4208-4214, Vol. 66, No. 9
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Molecular Cloning, Expression, and Immunogenicity of MTB12,
a Novel Low-Molecular-Weight Antigen Secreted by
Mycobacterium tuberculosis
John R.
Webb,1,
Thomas S.
Vedvick,2
Mark R.
Alderson,2
Jeffrey A.
Guderian,2
Shyian S.
Jen,2
Pamela J.
Ovendale,2
Stephen M.
Johnson,1,
Steven G.
Reed,1,2,3 and
Yasir A. W.
Skeiky2,*
Infectious Disease Research
Institute1 and
Corixa
Corporation,2 Seattle, Washington 98104, and
Department of Pathobiology, University of Washington, Seattle,
Washington 981953
Received 4 March 1998/Returned for modification 20 April
1998/Accepted 10 June 1998
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ABSTRACT |
Proteins secreted into the culture medium by Mycobacterium
tuberculosis are thought to play an important role in the
development of protective immune responses. In this report, we describe
the molecular cloning of a novel, low-molecular-weight antigen (MTB12) secreted by M. tuberculosis. Sequence analysis of the MTB12
gene indicates that the protein is initially synthesized as a 16.6-kDa precursor protein containing a 48-amino-acid hydrophobic leader sequence. The mature, fully processed form of MTB12 protein found in
culture filtrates has a molecular mass of 12.5 kDa. MTB12
protein constitutes a major component of the M. tuberculosis culture supernatant and appears to be
at least as abundant as several other well-characterized culture
filtrate proteins, including members of the 85B complex. MTB12 is
encoded by a single-copy gene which is present in both virulent
and avirulent strains of the M. tuberculosis complex, the
BCG strain of M. bovis, and M. leprae.
Recombinant MTB12 containing an N-terminal six-histidine tag was
expressed in Escherichia coli and purified by affinity
chromatography. Recombinant MTB12 protein elicited in vitro
proliferative responses from the peripheral blood mononuclear cells of
a number of purified protein derivative-positive (PPD+)
human donors but not from PPD
donors.
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INTRODUCTION |
Tuberculosis remains one of the
world's most serious health threats, with approximately 2 billion
people infected worldwide and an estimated 2.9 million deaths due to
tuberculosis annually (20). The recent increase in the
incidence of tuberculosis, particularly antibiotic-resistant
tuberculosis, underscores the need for an effective vaccine
against this important disease (19). The only vaccine
currently in use is the live, attenuated strain of
Mycobacterium bovis, bacillus Calmette-Guérin (BCG),
that was derived in the early 1920s (6, 7). Although
vaccination with BCG is widely practiced worldwide, its efficacy is
reported to vary considerably among different clinical trials and
geographically distinct populations. A recent review of all previous
controlled clinical trials concluded that vaccination with BCG reduced
the overall risk of tuberculosis by approximately 50% (8).
Recently, emphasis has been placed on the apparent requirement for live
mycobacterial organisms for effective vaccination against tuberculosis
and the hypothesis that proteins released by live bacilli during an
extended latent infection are particularly important for the generation
of protective immune responses (for a review, see reference
25). Accordingly, a significant body of literature
addressing the characterization and identification of proteins that are
secreted by M. tuberculosis has been compiled (for
reviews, see references 25 and
32). Culture filtrate proteins (CFP) obtained
from in vitro-cultivated M. tuberculosis are highly
antigenic in terms of their capacity to stimulate in vitro
proliferation and cytokine production from T cells of infected mice,
guinea pigs, and purified protein derivative-positive
(PPD+) human donors (4, 25, 27, 35).
Furthermore, various preparations of CFP have been shown to offer some
degree of protection when used as vaccines in animal models of
tuberculosis (2, 17, 26, 27). Therefore, CFP is
considered to be an important source of candidate antigens for a
potential subunit vaccine against tuberculosis. Although a number
of components of CFP have been isolated, cloned, and extensively
characterized, a recent analysis of CFP by two-dimensional sodium
dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) revealed
that CFP is comprised of up to 205 distinct proteins (32).
We are currently characterizing culture supernatants of M. tuberculosis with the aim of identifying novel antigenic proteins.
In this report, we describe the identification, molecular cloning, and
expression of a novel, low-molecular-weight antigen (MTB12) from
M. tuberculosis culture supernatants. MTB12 is a highly
abundant component of M. tuberculosis culture
supernatant that is readily detectable in Coomassie blue-stained gels
of CFP. The MTB12 gene is present in virulent and avirulent strains
of the M. tuberculosis complex, M. leprae, and M. bovis (BCG), and recombinant MTB12
protein elicits in vitro responses from the peripheral blood
mononuclear cells (PBMC) of PPD+ human donors.
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MATERIALS AND METHODS |
Strains.
M. tuberculosis H37Ra, H37Rv, and Erdman
were provided by Sean Skerritt (Seattle VA Hospital). M. tuberculosis strain C is a clinical isolate provided by Lee Riley
(University of California, Berkeley). Pelleted samples of M. bovis BCG and M. leprae were kindly provided by
Paul Tan (Genesis Corp.). Mycobacterial genomic DNA was prepared as
previously described (18). Genomic DNA from M. tuberculosis H37Ra and H37Rv was fragmented for
library generation by using either partial digestion with
Sau3A (H37Rv library) or sonication (H37Ra library). In both
cases, DNA fragments in a size range of 300 to 4,000 bp were blunted
with Klenow polymerase, ligated to EcoRI adapters, and
subcloned into EcoRI-predigested
ZAP bacteriophage arms
as specified by the manufacturer (Stratagene). Phage were packaged by
using Gigapack II packaging extracts (Stratagene) as recommended by the
manufacturer.
HPLC purification of CFP.
Concentrated CFP of M. tuberculosis Erdman was provided by John Belisle (Colorado State
University) and purified by a two-step process. CFP was initially
fractionated by high-pressure liquid chromatography (HPLC) on a 4.6- by
25-cm Aquapore C18 column (Brownlee) at a flow rate of 1 ml/min with a 0 to 60% acetonitrile gradient in 30 min. One of the
major peaks resolved by this method was shown by protein sequence
analysis to be a mixture of proteins and was therefore subjected to
further purification using microbore HPLC. The sample was resolved on a
1.1- by 100-mm Aquapore C18 column (Brownlee) at a flow
rate of 80 µl/min with a 20 to 70% acetonitrile gradient in 70 min.
Peak fractions from the microbore HPLC were loaded onto
biobrene-treated glass fiber filters (Perkin-Elmer/Applied Biosystems).
The loaded filters were then placed in a Procise 494 protein sequencer
(Perkin-Elmer/Applied Biosystems) and sequenced from the amino
terminus, using traditional Edman chemistry.
Cloning of the M. tuberculosis MTB12 gene.
The M. leprae homolog of the MTB12 gene was amplified
from M. leprae genomic DNA by PCR. PCR primers
(5'-ATGAAATCCATCGCCACCTATGCA-3' and
5'-TCAACGCCCCGCGGCCTGCAACAG-3') were designed based on
sequence obtained from GenBank accession no. U00016_13. The PCR program consisted of 30 cycles of 94°C for 1 min, 55°C for 1 min, and 72°C for 1 min. A single amplification product of the expected size
(495 bp) was subcloned into the pCR vector (Invitrogen), and the insert
identity was confirmed by DNA sequence analysis. The cloned
amplification product was reisolated by digestion with EcoRI
and agarose gel purification and was labeled to high specific activity
(~109 cpm/µg) with [
-32P]dCTP, using
the random primer method (14). This probe was used to screen
an M. tuberculosis H37Rv genomic library prepared in
the
ZAPII vector (Stratagene). Approximately 40,000 PFU were screened by plaque hybridization. Filters were washed to a final stringency of 0.2× SSC (1× SSC is 0.15 M NaCl plus 0.015 M sodium citrate) at 65°C. Hybridizing plaques were purified to homogeneity by
two subsequent rounds of low-density plaque screening, and Bluescript
phagemids were excised from positive clones as specified by the
manufacturer (Stratagene). Sequence analysis revealed that one of the
clones contained the complete M. tuberculosis MTB12 open reading frame (ORF) plus 1.2 kb of 5' untranslated sequence and 2 kb of 3' untranslated sequence.
For serological screening, a polyclonal rabbit antiserum was raised
against the concentrated culture filtrates of M. tuberculosis by injecting rabbits with 200 µg of protein in
incomplete Freund's adjuvant plus 100 µg of
N-acetylmuramyl-L-alanyl-D-isoglutamine (MDP) (Pierce). Serum was collected after two subsequent boosts given
at approximately 6-week intervals. This serum was preabsorbed against
total Escherichia coli protein and was used to screen an
M. tuberculosis H37Ra genomic expression library
(described above). An alkaline phosphatase-conjugated goat anti-rabbit
secondary antibody (Zymed) plus nitroblue
tetrazolium-5-bromo-4-chloro-3-indolylphosphate (GibcoBRL) was used to
detect immunoreactive plaques.
Expression and purification of recombinant MTB12.
Recombinant proteins corresponding to the full-length M. tuberculosis MTB12 and mature protein (lacking signal sequence)
were prepared by using the pET17b E. coli high-level
expression system (Novagen). MTB12 DNA was amplified by PCR using the
primers
5'-AATTACATATGCATCACCATCACCATCACACCGGTAGTTTGAACCAAACGCAC-3' and the M13 universal primer (full-length protein) or
5'- CAATTACATATGCATCACCATCACCATCACGACCCGGCATCCGCCCCT GAC-3' and 5'-CATGGAATTCTCAGTTCCCTGCGGCCTGCAGCAA-3' (mature
protein). The 5' oligonucleotides contained an NdeI
restriction site preceding the ATG initiation codon (underlined)
followed by nucleotide sequences encoding six histidines (bold) and
internal sequences derived from the MTB12 genomic DNA (italic). The
resultant PCR products were digested with NdeI and
EcoRI and subcloned into the pET17b vector digested with
NdeI and EcoRI. Ligation products were initially transformed into E. coli XL1-Blue competent cells
(Stratagene) and were subsequently transformed into E. coli
BL-21(pLysE) host cells (Novagen) for expression. Five
hundred-milliliter cultures of recombinant E. coli were
induced to express recombinant MTB12 (rMTB12) by the addition of 1 mM
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (IPTG)
at mid-log phase of growth. Growth was continued for 3 h, and
bacteria were pelleted and lysed in 20 ml of lysis buffer (10 mM Tris
[pH 8.0], 2 mM phenylmethylsulfonyl fluoride, 20 µg of leupeptin
per ml, one Complete protease inhibitor tablet [Boehringer Mannheim] per 25 ml) by rapid freeze-thaw followed by brief
sonication. Lysates were separated into a soluble protein fraction and
an inclusion body fraction by a 10-min centrifugation at 10,000 × g. The soluble fraction was made up to a final concentration
of 100 mM Na2HPO4 (pH 8.0)-10 mM Tris (pH
8.0)-8 M urea, and recombinant protein containing the N-terminal
histidine tag was purified by using Ni-nitrilotriacetic acid (NTA)
resin (Qiagen) according to the manufacturer's protocols. Briefly,
Ni-NTA resin was washed in lysis buffer and added to the soluble
E. coli lysate fraction. Binding was conducted with constant
mixing for 1 h at 4°C. Ni-NTA resin containing the bound protein
was washed with binding buffer (pH 6.3) and eluted in binding buffer
containing 350 mM imidazole. The eluted material was dialyzed against
three changes of phosphate-buffered saline (PBS), sterile
filtered, and stored at
20°C. The purified recombinant
proteins were shown by SDS-PAGE analysis to be free of any significant
amount of E. coli protein (see Fig. 4). Recombinant proteins
were assayed for endotoxin contamination by using the Limulus assay (BioWhittaker) and were shown to contain <10
endotoxin units/mg. A polyclonal rabbit antiserum was raised against
recombinant mature MTB12 by injecting rabbits with 200 µg of protein
in IFA plus 100 µg of MDP (Pierce). Serum was collected after two
subsequent boosts given at approximately 6-week intervals.
Immunoblot analysis of rMTB12.
M. tuberculosis
H37Rv total lysate or CFP (2.5 µg of each) as well as 50 ng of the
indicated recombinant protein (full-length MTB12, mature MTB12, or 85B)
were separated by SDS-PAGE on 12% gels and transferred to
nitrocellulose by using a semidry transfer apparatus (Bio-Rad). Blots,
in triplicate, were blocked for a minimum of 1 h with PBS-0.1%
Tween 20 containing 1% bovine serum albumin and were probed with
anti-CFP, anti-MTB12, and anti-85B polyclonal rabbit antisera diluted
1:400 in PBS-0.1% Tween 20 as indicated. Reactivity was assessed as
previously described (31), using [125I]protein
A followed by autoradiography. For amino acid sequence determination,
CFP was separated by SDS-PAGE on a 12% gel and transferred in
triplicate to a polyvinylidene difluoride (PVDF) membrane. Membrane
strips were stained with Coomassie blue to detect protein bands.
Specific bands were excised from the stained strip and subjected to
N-terminal sequence analysis using a Procise 494 protein sequencer
(Perkin-Elmer/Applied Biosystems). A second and a third strip were
completely destained in methanol and were analyzed by Western blotting
using an anti-MTB12 polyclonal rabbit antiserum or corresponding
preimmune serum as described above.
Immunological reactivity of rMTB12.
Proteins isolated from
CFP by microbore HPLC and recombinant MTB12 proteins were assayed for
the ability to elicit in vitro proliferative responses from whole PBMC
of healthy PPD
and PPD+ donors. PBMC were
obtained from heparinized blood by Ficoll gradient centrifugation or by
leukapheresis. PBMC (2 × 105 well) were incubated in
96-well round-bottom plates (Costar) in medium only (RPMI 1640 with
10% pooled human serum) or in medium containing specific antigens at
the indicated concentrations. Plates were cultured for 5 days at 37°C
in 5% CO2 and were pulsed with 1 µCi of
[3H]thymidine (Amersham) for the final 18 h. Cells
were harvested onto filter mats and counted in a Matrix 9600 direct
beta counter (Packard).
Nucleotide sequence accession number.
The nucleotide and the
deduced amino acid sequences of MTB12 have been entered in the GenBank
database under accession no. AF062036.
 |
RESULTS |
Purification of MTB12 from M. tuberculosis
CFP.
The CFP of M. tuberculosis has been
repeatedly shown to be rich in immunologically reactive protein
antigens (25, 35). To identify novel antigenic components of
this material, we fractionated CFP by C18 reverse-phase
HPLC followed by microbore HPLC and characterized protein peaks eluting
from the second fractionation step by N-terminal amino acid sequencing.
Peak fractions were also assayed for the ability to elicit in vitro
proliferative responses from the PBMC of PPD+ human donors.
We focused our efforts on a single peak (Fig.
1, fraction 7) that eluted just
prior to the 45/47-kDa secreted antigen MPT32 (21). Fraction
7 contained a single protein with an N-terminal se- quence (DPASAPDVPTAAQLTSLLNSLADPNVSFA) that was
not present in any previously reported secreted protein of
M. tuberculosis. In addition, this fraction elicited in
vitro proliferative responses in the PBMC from two of two
PPD+ donors but not from PPD
donors (Table
1).

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FIG. 1.
Chromatogram of M. tuberculosis CFP
fractionated by conventional HPLC (C18) followed by
microbore HPLC (C18) and eluted with a 20 to 70%
acetonitrile gradient. Peak fractions were analyzed by N-terminal amino
acid sequencing. The peak labeled fraction 7 was found to contain a
protein with novel N-terminal sequence. The peak labeled MPT32 was
found to correspond to the 45/47-kDa secreted antigen
(21).
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TABLE 1.
In vitro proliferative responses of PBMC obtained
from PPD+ or PPD donors in the
presence of M. tuberculosis HPLC fraction 7
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Molecular cloning of the gene encoding MTB12.
A search of the
gene data banks with the N-terminal sequence obtained from fraction 7 indicated that this sequence was derived from a novel protein of
M. tuberculosis. However, the search did reveal homology with the product of a putative ORF from the
M. leprae genome sequencing project (accession
no. U00016_13). The predicted amino acid sequence of the
M. leprae ORF contained a region that was
identical to the fraction 7 N-terminal sequence at 21 of 29 residues.
To facilitate the isolation of the M. tuberculosis fraction 7 gene, the M. leprae homolog was
amplified from M. leprae genomic DNA by PCR and was
used as a probe to screen an M. tuberculosis H37Rv
ZAP genomic library by plaque hybridization. Five positive phage clones were obtained. Sequence analysis revealed that the insert
of one of these clones contained a 507-bp ORF encoding a 168-amino-acid
protein with a predicted molecular mass of 16.6 kDa (Fig.
2A). Residues 49 to 78 of the predicted
protein sequence had 100% identity with the N-terminal sequence
obtained from the microbore HPLC fraction 7. These residues were
preceded by a stretch of 48 highly hydrophobic amino acids that are
presumed to constitute an N-terminal signal sequence, directing the
transport of the protein to the extracellular space. Thus, the
N-terminal sequence of the protein identified as HPLC fraction 7 likely
represents the amino terminus of the mature fully processed protein
found in the CFP. The mature, processed protein had a predicted
molecular mass of 12.5 kDa and a pI of 5.03. Based on the size of
the mature protein, we have designated this protein MTB12. Similarity
between the M. tuberculosis MTB12 protein and the
M. leprae homolog was significant: 107 of 168 (63.7%)
amino acid identity and 22 conservative substitutions (Fig. 2B). The
most significant difference between the two species was a four-residue
deletion within the putative signal sequence region of the
M. leprae homolog. Other conservative and
nonconservative substitutions occurred throughout the protein and were
not restricted to any particular region. Further database searching did
not reveal the presence of any structural domains that might provide
evidence of the biological function of MTB12.

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FIG. 2.
(A) Nucleotide sequence and predicted amino acid
sequence of the M. tuberculosis MTB12 gene. Those amino
acids comprising the putative leader sequence (absent from the mature
protein) are shown in italics. The amino acid residues determined
during N-terminal sequence analysis of HPLC fraction 7 are shown in
bold. The position of the -galactosidase-MTB12 fusion in clone Ra-1
(isolated during a library screen using anti-CFP polyclonal antiserum)
is indicated by an arrow at position 64. (B) Comparison of the amino
acid sequence of the M. tuberculosis MTB12 protein and
the predicted protein sequence of the M. leprae homolog
(GenBank accession no. U00016_13). Identical amino acids are shown with
a shaded background. The amino acid residues determined during
N-terminal sequence analysis are indicated by a horizontal line above
the MTB12 sequence.
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The MTB12 gene was also isolated by using a serological screening
approach that was being performed concurrently to the biochemical characterization of M. tuberculosis CFP. In this
second approach, a polyclonal rabbit antiserum generated against
total M. tuberculosis CFP was used to screen an
M. tuberculosis H37Ra genomic expression library. Of
the 27 clones thus isolated, two contained inserts corresponding to
MTB12. One of these clones (designated Ra-1) contained the complete
MTB12 ORF (including the signal sequence) plus 63 bp of 5' untranslated
sequence in frame with the vector-encoded
-galactosidase. This clone
expressed a 21-kDa fusion protein that exhibited strong
immunoreactivity with the anti-CFP antiserum (data not shown). A
number of other clones corresponding to previously characterized
secreted proteins, including 85B (9), 45/47-kDa secreted
antigen (21), and MPT64 (24), were also isolated by using this antiserum.
The organization of the MTB12 gene in various members of the
M. tuberculosis complex was analyzed by Southern
blotting. A probe comprising the insert of clone Ra-1 (containing the
complete MTB12 coding region plus a small amount of 5' and 3'
untranslated sequence) was hybridized to a blot containing
PstI-digested genomic DNAs from M. tuberculosis H37Ra, H37Rv, and Erdman; a recent M. tuberculosis clinical isolate referred to as strain C;
and the M. bovis BCG. Hybridizing bands of
approximately 1.0 and 1.6 kbp were observed in all strains (data
not shown). Sequence analysis of the 3.6-kbp genomic clone from which
the M. tuberculosis MTB12 gene was isolated revealed
the presence of three PstI restriction sites in the vicinity
of the MTB12 ORF. The first site was located near the 3' end of the
MTB12 ORF, and the remaining two sites were located 988 bp upstream and
1,579 bp downstream of the first PstI site. Thus, the sizes
of the predicted PstI restriction fragments were in complete
agreement with the hybridization pattern observed during Southern
blot analysis of genomic DNAs. Southern blot hybridizations to
genomic DNAs from a panel of other mycobacterial species (using the
same stringency conditions) were negative (data not shown), suggesting
that these species either lack an MTB12 homolog or contain a homolog
with sufficient sequence divergence to avoid detection at the
stringencies used (0.1× SSC at 65°C).
Recognition of rMTB12 protein by human PBMC.
rMTB12 protein
containing an N-terminal six-histidine affinity tag was expressed in
the pET17b E. coli high-level expression system (Novagen).
Two recombinant proteins were prepared, one corresponding to the mature
protein (lacking a signal sequence) and the other corresponding to the
full-length MTB12 protein expressed by clone Ra-1 (containing the
leader sequence plus an additional 21 residues derived from the 5'
untranslated region). Recombinant proteins were purified to
homogeneity by Ni-NTA affinity chromatography and were shown by
SDS-PAGE to be free of contaminating E. coli protein (Fig.
3). Recombinant MTB12 protein was assayed
for the ability to elicit in vitro proliferative responses from
PPD+ and PPD
human donor PBMC. Although
proliferative responses to recombinant protein were weaker than the
responses elicited by total CFP, recombinant MTB12 consistently
elicited in vitro proliferation from a number of PPD+
donors (Table 2). Of the 10 PPD+ donors tested, 4 responded to recombinant MTB12
protein with a stimulation index of between 4 and 12. Recombinant MTB12
protein did not elicit substantial proliferation from any of the six
PPD
individuals tested. Viability of all PBMC was
confirmed by proliferation in the presence of CFP (PPD+
individuals), tetanus toxoid (PPD
individuals), and
phytohemagglutinin (data not shown). Interestingly, full-length
recombinant MTB12 protein elicited a slightly stronger response than
did mature protein in several of the MTB12-responsive donors (data
not shown), suggesting that amino acids comprising the leader sequence
may contribute to MTB12-specific immune response.

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FIG. 3.
Expression and purification of rMTB12 proteins.
Recombinant proteins corresponding to full-length MTB12 protein (A) or
mature MTB12 protein lacking the leader sequence (B), both containing
amino-terminal six-histidine tags, were expressed by using the pET17b
E. coli high-level expression system. Lysates of uninduced
cultures (lane 1), IPTG-induced cultures (lane 2), and
affinity-purified recombinant protein (lane 3) were fractionated by
SDS-PAGE and stained with Coomassie blue. Positions of size markers
(lane M) are indicated in kilodaltons.
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TABLE 2.
In vitro proliferative responses of PBMC obtained from
PPD or PPD+ human donors in the presence
of recombinant MTB12 protein
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Western blot analysis of endogenous MTB12 protein in
M. tuberculosis.
Polyclonal rabbit antisera raised
against total CFP or against recombinant mature MTB12 protein were used
to probe Western blots containing M. tuberculosis
lysate and CFP (Fig. 4). As expected, antiserum raised against total CFP reacted strongly with a number of
bands in CFP and in crude lysate (Fig. 4A). This same antiserum also
recognized the full-length and mature recombinant MTB12 proteins, 85B,
and a low-molecular-mass (12-kDa) band in the CFP lane. The 12-kDa CFP
protein migrated slightly faster than mature recombinant MTB12 protein
and was therefore presumed to represent the fully processed endogenous
MTB12 protein lacking the N-terminal six-histidine tag of the
recombinant. This interpretation was confirmed by probing a duplicate
Western blot with a rabbit polyclonal anti-MTB12 antiserum (Fig. 4B).
This serum reacted strongly with both the full-length and mature forms
of recombinant MTB12 protein but was specific for only the single
low-molecular-mass (12-kDa) protein in the M. tuberculosis CFP. Once again, the immunoreactive protein in CFP migrated slightly faster than recombinant mature MTB12
protein, implying that this band corresponded to the endogenous MTB12
mature protein lacking the N-terminal six-histidine tag. Interestingly, the anti-MTB12 antiserum did not detect any proteins in the
M. tuberculosis lysate. This latter finding suggested
that the MTB12 protein is rapidly processed and exported from the
bacilli after synthesis. To confirm that the lack of detectable MTB12
in lysate was the result of rapid export and not degradation of the
M. tuberculosis lysate, a third blot was probed
with a rabbit polyclonal antiserum raised against the
M. tuberculosis secreted protein 85B (9). This antiserum recognized recombinant 85B, native 85B in CFP, and a
single band corresponding to 85B in the lysate (Fig. 4C), confirming the integrity of the lysate. Together, these results suggest
that MTB12 has a very short intracellular half-life and that it is
exported more rapidly than another extracellular protein, 85B.
Interestingly, only the mature, fully processed form of 85B protein was
detected in lysate, indicating that leader sequences of both MTB12 and
85B are rapidly removed after synthesis.

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FIG. 4.
Immunoblot analyses of MTB12. Western blots containing
M. tuberculosis lysate (2.5 µg), CFP (2.5 µg),
recombinant mature MTB12 (50 ng), full-length MTB12 (Fl-MTB12; 50 ng),
and 85B (50 ng) were incubated with anti-CFP (A), anti-MTB12 (B), or
anti-85B (C) polyclonal rabbit antisera. Immunoreactive proteins were
detected by using [125I]protein A followed by
autoradiography. Positions of size markers are indicated in
kilodaltons.
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The intensity of the signal in the Western blot of M. tuberculosis CFP probed with anti-MTB12 antiserum prompted us to
determine the abundance of MTB12 in CFP relative to other
well-characterized CFP proteins. CFP was separated by
one-dimensional SDS-PAGE, transferred to a PVDF membrane by Western
blotting, and stained with Coomassie blue. A triplet of proteins with
the same approximate molecular weight as mature MTB12 was readily
visible after staining (Fig. 5, lane 1).
The middle band of the triplet was determined to be MTB12 according to
two different criteria. First, this band (on a duplicate blot) was
reactive with the polyclonal anti-MTB12 antiserum by Western blotting
(Fig. 5, lane 2) but not with the corresponding preimmune serum (Fig.
5, lane 3). Second, the identity of a number of predominant CFP
proteins was determined by N-terminal sequencing of bands excised from
the Coomassie blue-stained PVDF membrane. The middle band of the
triplet contained the N-terminal sequence of mature MTB12,
whereas the lower band of the triplet corresponded to GroES. The
uppermost band of the triplet could not be identified, as it was
blocked at the N terminus. The locations of three other abundant CFP
proteins (85B complex, MPT64, and GroEL) that were identified by
N-terminal sequencing are indicated at the right in Fig. 5. Together,
these data suggest that MTB12 is a highly abundant component of
M. tuberculosis CFP and that MTB12 is at least as
abundant as several other well-characterized CFP proteins.

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FIG. 5.
Relative abundance of MTB12 in M. tuberculosis culture filtrates. M. tuberculosis
CFP was separated by SDS-PAGE, transferred to a PVDF membrane by
Western blotting and stained with Coomassie blue (lane 1). Bands
corresponding to the most highly abundant proteins were excised and
characterized by N-terminal amino acid sequencing. Identities of these
proteins are indicated where known. A pair of duplicate strips were
destained in 100% methanol, blocked with 1% bovine serum albumin and
probed with a rabbit polyclonal anti-MTB12 antiserum (lane 2) or
corresponding preimmune serum (lane 3). The middle band of the triplet
migrating at approximately 12 kDa was shown by both amino acid
sequencing and Western blot analysis to be MTB12. Positions of size
markers (M) are indicated in kilodaltons.
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DISCUSSION |
In this study, a novel protein present in M. tuberculosis CFP was identified, cloned, and characterized in
terms of abundance and immunological reactivity. The crude CFP
from M. tuberculosis has been extensively
characterized as a rich source of antigens that elicit protective
responses in various models of tuberculosis (2, 26).
Furthermore, it has been speculated that active synthesis and secretion
of CFP components are responsible for the greater efficacy of
vaccination using live attenuated mycobacteria than of vaccination
using killed organisms. Consequently, the CFP is currently being
characterized by a number of labs in an effort to define specific
proteins that may be useful as subunit vaccine reagents. The MTB12
protein reported herein is a highly abundant component of M. tuberculosis CFP that appears to be actively secreted. The
presence of a consensus signal sequence at the N terminus and the
removal of this sequence from the mature, extracellular form of the
protein confirm that MTB12 is indeed targeted to the extracellular
space by M. tuberculosis. However, it is not clear from
this analysis whether the MTB12 protein is released directly into the
culture medium or whether it represents a surface protein that is
fortuitously shed into the culture medium by membrane turnover. The
lack of a recognizable lipid attachment site and the inability to
detect MTB12 protein in M. tuberculosis lysate preparations suggest that the membrane turnover hypothesis is less
likely. Also, the MTB12 protein contains two consensus sites for
N-linked glycosylation. Although there is limited evidence to suggest
that glycosylation does occur in mycobacteria (11-13, 15),
only O-linked glycosylation has been reported to date.
It is intriguing that MTB12 has not been previously identified as a
component of CFP considering the apparent abundance of the protein.
Various preparations of CFP are known to vary in composition dependent
on the culture media used (3, 10, 23, 32) and the growth
phase of the culture (i.e., early log versus late log phase)
(3). Therefore, it is possible that secretion of MTB12 is
dependent on one or both of these parameters. The CFP analyzed in this
study corresponded to filtrate proteins of a late-log-phase
culture grown in GAS medium (32). Also, mature MTB12
is found in close proximity to the GroES protein after one-dimensional SDS-PAGE and has a pI (5.03) which is similar to that determined for
GroES (32). It is therefore plausible that the MTB12 protein has been previously overlooked due to its proximity to the
well-characterized GroES protein.
During preparation of this report, a search of a recently released
database containing portions of the M. tuberculosis genome revealed the presence of a cosmid
(MTCY27) that harbored the complete MTB12 ORF (sequence accession
no. MTCY27.04). Analysis of the cosmid sequence in the region of
the MTB12 ORF confirmed that digestion with PstI would
produce the 1- and 1.6-kbp hybridizing bands that we observed by
Southern blotting. Although the complete M. tuberculosis genome is not yet available, this result also suggests that MTB12 is likely to be encoded by a single-copy
gene. Furthermore, our Southern blot results indicate that these
same two PstI sites are conserved in other strains of
M. tuberculosis and in M. bovis,
implying that the MTB12 gene is conserved among members of the
M. tuberculosis complex. Interestingly, database searches also revealed homology between MTB12 and the predicted ORF of
a distal cosmid (MTCY261.12). Despite significant sequence divergence between these two ORFs (40% overall sequence identity), they encode proteins that are almost identical in size, and like MTB12,
this related protein appears to have an N-terminal signal sequence that would presumably lead to export into the extracellular space. The functions of both MTB12 and this related protein are unknown, and a search of the SWISSPRO databanks with the MTB12 sequence did not reveal the presence of any obvious structural domains.
However, the inability to detect MTB12 protein in M. tuberculosis lysates suggests that it is rapidly transported out of the bacillus after synthesis and is therefore likely to be functionally active only in the extracellular space.
Recognition of recombinant MTB12 protein by the PBMC of healthy,
disease-free, PPD+ donors provides intriguing evidence that
MTB12 may play a role during the development of protective immune
responses against M. tuberculosis. In addition, there
is considerable evidence to suggest strong cellular immune responses
are developed against other abundant, secreted proteins of
M. tuberculosis, including members of the 85B complex
(22, 28, 29), the 38-kDa antigen (33), the
Apa (Tb45/47) protein (21, 30), and others. There is a
high likelihood that secreted proteins such as these will be processed
and presented in the context of major histocompatibility complex (MHC)
class II molecules, resulting in the in vivo stimulation of
CD4+ T cells. These molecules therefore represent likely
candidates for vaccine development since priming of an appropriate
cellular response in a naive individual would be expected to influence the outcome of a subsequent infection. We are currently
assessing MTB12-specific immune responses in a broader array of
donor types, including patients in various states of disease
progression, healthy household contacts, and BCG recipients. In
addition, we are investigating MTB12-specific immune responses in
murine models of tuberculosis.
Comparison of the antigenicity of recombinant mature MTB12
with that of the equivalent full-length protein indicated that for some
human donors the full-length MTB12 protein elicited a slightly
stronger in vitro response than did mature protein (data not shown).
This finding suggests that the hydrophobic leader sequence, which is
normally cleaved during processing, may contribute to the antigenicity
of the full-length molecule. We have also observed a similar
phenomenon in mouse immunization experiments (unpublished data).
Although leader sequence peptides derived from endogenously
synthesized proteins are known to be bound and presented by classical
(16, 34) and nonclassical (1, 5) class I MHC
molecules, presentation of exogenous leader sequence peptides by class
I or class II MHC molecules has not been well described. Thus, it would
be interesting to determine the relative contributions of
CD4+ and CD8+ T cells during the augmented
proliferative response observed in the presence of full-length
MTB12 protein.
The abundance of MTB12 in culture supernatants together with the
immunological data presented herein suggests that MTB12 may have
potential value as a subunit vaccine component to protect against
infection by M. tuberculosis. We are currently
assessing the protective capability of MTB12 vaccination in murine
models of tuberculosis, using both recombinant protein in conjunction with specific adjuvants and DNA vaccine approaches.
 |
ACKNOWLEDGMENTS |
We thank John Belisle for providing M. tuberculosis CFP and Teresa Bement for performing human PBMC
proliferation assays.
S.M.J. was supported in part by NIH training grant 5T32HD07233.
J.R.W. and Y.A.W.S. were supported in part by fellowships from the
Medical Research Council of Canada.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Corixa
Corporation, 1124 Columbia St., Suite 200, Seattle, WA 98104. Phone:
(206) 754-5772. Fax: (206) 754-5715. E-mail:
skeiky{at}corixa.com.
Present address: Department of Microbiology and Immunology,
University of Ottawa, Ottawa, Canada K1H 8M5.
Present address: P.O. Box 1944, Chinle, AZ 86503.
Editor:
S. H. E. Kaufmann
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Infection and Immunity, September 1998, p. 4208-4214, Vol. 66, No. 9
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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