Infection and Immunity, September 1998, p. 4313-4323, Vol. 66, No. 9
0019-9567/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Department of Biochemistry and Molecular
Biology,1
Department of Microbiology and
Molecular Genetics,2
Division of
Infectious Diseases,
Received 21 April 1998/Returned for modification 28 May
1998/Accepted 17 June 1998
Our previous work identified a cosmid clone containing a 43-kb
insert from Enterococcus faecalis OG1RF that produced a
nonprotein antigen in Escherichia coli. In the present
work, we studied this clone in detail. Periodate treatment of lysates
of the clone confirmed that the antigen was carbohydrate in nature.
Analysis of DNA sequences and transposon insertion mutants suggested
that the insert contained a multicistronic gene cluster. Database
comparison showed that the cluster contained genes similar to genes
involved in the biosynthesis of dTDP-rhamnose, glycosyltransferases,
and ABC transporters involved in the export of sugar polymers from both
gram-positive and gram-negative organisms. Insertions in several genes
within the cluster abolished the immunoreactivity of the clone. This is
the first report on a gene cluster of E. faecalis
involved in the biosynthesis of an antigenic polysaccharide.
Many studies and reviews have
discussed the important roles of polysaccharides in bacterial
physiology and pathogenesis (2, 15, 46). As components of
bacterial cell walls, capsules, lipopolysaccharides of
gram-negative organisms, and accessory polymers of
gram-positive cell walls, they not only offer structural rigidity for
maintaining the shape of cells but also affect surface permeability,
charge, and hydrophobicity and consequently affect the way bacteria
interact with the environment. One important aspect of polysaccharides
relates to their immunological and biological properties in tissues of
the host, such as inhibition of phagocytosis and stimulation of
cytokine production (17). These properties are critical in
determining the outcome of the intricate interactions between bacteria
and the host immune system. Many polysaccharides are also the
immunodeterminants of serotype-specific antigens, including the
O-antigen side chains of lipopolysaccharide and group and type antigens
of some streptococci. Thus, it is clear that knowledge of cell surface
architecture is important in understanding bacterial behavior inside
the host, as well as in designing new therapeutics and serodiagnostic
tools.
Biosynthesis of polysaccharides generally involves synthesis of sugar
precursors in the cytoplasm, formation and polymerization of repeating
units, and export to the cell surface. The formation of repeating units
usually is initiated by the transfer of a sugar precursor onto a lipid
carrier, such as undecaprenol-phosphate, to which subsequent sugar
residues can be added. The sugar residue attached to the lipid carrier
is often the first sugar in the repeating units (1, 44, 56),
although there are exceptions as in Escherichia coli O8
and O9 serotype-specific O antigens in which the sugar residues
attached to the lipid carrier do not appear in the final
polysaccharides (41). Genes for the biosynthesis of
polysaccharides are generally arranged in clusters of one or several
transcriptional units (13, 32, 44, 56).
Enterococci (formerly group D streptococci) are among the leading
causes of nosocomial infections in the United States, with the majority
of clinical isolates being classified as Enterococcus faecalis (34). Besides their low-level intrinsic
resistance to many antibiotics, enterococci have also developed
high-level resistance to other antibiotics, including vancomycin and
In a previous study, we reported a cosmid clone carrying a DNA fragment
from E. faecalis OG1RF that produced a nonprotein antigen in E. coli (57). We hypothesized
that the antigen could be a polysaccharide of OG1RF. To test this
hypothesis, we have carried out further studies including DNA sequence
analysis and characterization of transposon mutants. The results showed
that the DNA fragment contains a gene cluster with homology to genes important in the assembly and export of polysaccharide from various organisms. Transposon insertions in three open reading frames (ORFs)
within the cluster caused the loss of antigen expression in
E. coli.
Bacterial strains, plasmids, and culture conditions.
Strains
and plasmids used in this study are listed in Table
1. E. coli cells were
grown in Luria-Bertani (LB) broth or on LB agar with appropriate
antibiotics overnight at 37°C. Enterococci were grown in brain heart
infusion (BHI) broth or on BHI agar (Difco) overnight at 37°C for
routine purposes. Antibiotics were used at the following
concentrations: chloramphenicol at 25 µg/ml, kanamycin at 50 µg/ml,
and ampicillin at 50 µg/ml.
Isopropylthio-
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ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-lactams (34). Very little information is available on
cell surface-associated polysaccharides of enterococci. Early studies
on the type-specific antigens in enterococci indicated that they were
polysaccharides in the cell walls (6, 19, 45, 47). Type 1 antigen seems to be the most frequently identified type among
E. faecalis isolates, at least in some studies
(45, 47). Crude cell wall extracts from E. faecalis type 1 strains were found to contain rhamnose, glucose,
galactose, N-acetylglucosamine (GlcNAc), and
N-acetylgalactosamine (6). Pazur et al.
demonstrated that enzymatic activities to synthesize thymidine
diphosphate glucose (TDP-Glc) and to convert TDP-Glc to thymidine
diphosphate rhamnose (TDP-Rha) were present in the cell extracts of
E. faecalis N (40). TDP-Glc and TDP-Rha are
the precursors from which glucose and rhamnose can be transferred to
synthesize polysaccharides. An immunogenic glycan was also found
in the cell walls of E. faecalis N (38,
39). The glycan was shown to be a diheteroglycan of glucose and
galactose, but no rhamnose was present. No genetic information on
polysaccharide biosynthesis in enterococci is available.
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MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
-D-galactoside (IPTG) and
5-bromo-4-chloro-3-indolyl-
-galactoside (X-Gal) were used at 0.5 mM
and 80 µg/ml, respectively.
TABLE 1.
Strains and plasmids used in this study
In vitro transposition. Cosmid DNA from clone TX5159 (formerly BO4B6I) (57) was prepared by the alkaline-sodium dodecyl sulfate (SDS) method and purified in a CsCl-ethidium bromide gradient as described by Sambrook et al. (43). In vitro tranposition using a Tn7-based system (3, 4, 48) was performed by Matthew C. Biery and Nancy L. Craig, Department of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University.
DNA manipulations and transformation of E. coli.
DNA preparation, purification, restriction digestion, agarose gel
electrophoresis, and ligation were performed by using standard methods
(43) unless otherwise stated. Routine preparation of E. coli competent cells and transformation of DNA into
E. coli were performed by the one-step procedure
(9). Transformation of cosmid DNA that had been subjected to
in vitro transposition was carried out by using Subcloning Efficiency
DH5
competent cells (GIBCO BRL, Life Technologies, Gaithersburg,
Md.); transformants were randomly picked and stored in 96-well
microtiter dishes in LB broth containing 15% glycerol.
Proteinase K, periodate treatment, SDS-polyacrylamide gel
electrophoresis (PAGE), and Western blot analysis.
Proteinase K
treatment of the cell lysates of E. coli clones was
based on a method described previously (57), with slight modifications. Briefly, 20 ml of an overnight culture of E. coli clones was centrifuged and resuspended in 700 µl of
phosphate-buffer saline. The suspension was split into two aliquots; 50 µl of proteinase K (50 mg/ml); Fisher Scientific, Fair Lawn, N.J.)
was added to the first aliquot, and 4 µl of 100 mM
phenylmethylsulfonyl fluoride and 50 µl of H2O were added
to the second. The aliquots were incubated at 50°C overnight and
stored at
20°C. Treatment by periodate followed part of the
procedure for the ECL Glycoprotein Detection Module (Amersham Life
Science, Little Chalfont, Engalnd). Twenty-five microliters of each of
the above aliquots (proteinase K treated and untreated) were mixed with
25 µl of 200 mM acetate buffer (pH 5.5.), then 25 µl of 30 mM
sodium metaperiodate (freshly prepared) was added, and the mixture was
incubated at room temperature for 1 h in the dark. The reaction
was stopped by addition of 25 µl of 20 mM sodium metabisulfite and
stored at
20°C in the dark. For controls, 25 µl of 200 mM acetate
buffer instead of 30 mM sodium metaperiodate was used.
-mercaptoethanol, 0.0025% bromophenol blue, 4% SDS), boiled for 5 min, and loaded onto the gel. The conditions for SDS-PAGE and Western
blotting were based on the method described previously (57).
Immunoblot analysis of bacterial colonies. Colonies were inoculated onto NitroBind nitrocellulose transfer membranes (Micron Separations, Inc., Westborough, Mass.) placed on LB agar plates containing proper antibiotics and were then incubated at 37°C overnight. The membranes were lifted, placed in a chloroform chamber for 15 min, and incubated in lysis buffer. Subsequent steps were as described previously (57).
PCR amplification from the ends of the transposon and purification of PCR products. NLC94 and NLC272 are primers that allow DNA synthesis to proceed outward from the ends of the Tn7 transposon. Primers GW248, GW250, GW251, GW254, GW273, GW280, and GW283 are primers hybridizing to regions in the insert of the cosmid. The sequence and location of each primer are summarized in Table 2 (see also Fig. 3).
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Sublconing of restriction fragments into pBluescript SK
(
).
Subcloning was based on the method described previously
(57), with sight modifications. Cosmid DNA was digested with
EcoRI, BamHI, or DraI and purified by
phenol-chloroform extraction followed by ethanol precipitation. Vector
pBluescript SK (
) DNA was digested with EcoRI,
BamHI, or EcoRV (to ligate with DraI)
and dephosphorylated with shrimp alkaline phosphatase (United States
Biochemical, Cleveland, Ohio). After ligation, the mixture was
transformed into E. coli DH5
and plated on LB plates
with ampicillin, IPTG, and X-Gal. White colonies were picked and
analyzed by restriction digestion of miniprep DNA.
DNA sequencing and sequence analysis.
Three types of
templates were prepared for sequencing: DNA from pBluescript SK (
)
clones prepared by using a Qiagen Plasmid Mini kit (Qiagen Inc.,
Chatsworth, Calif.); purified PCR products; and TX5159 cosmid DNA
purified in a CsCl-ethidium bromide gradient. Primers hybridizing to
the T3 and T7 regions in pBluescript SK (
) and to the ends of the
Tn7 transposon, as well as primers hybridizing to the ends
of the sequences from the previous rounds, were used as sequencing
primers. Sequencing reactions were performed by the Taq
Dye-deoxy Terminator method and a model 377 DNA sequencing system
(Applied Biosystems, Foster City, Calif.). The GelAssemble program in
the Genetics Computer Group (GCG; Madison, Wis.) software package was
used to assemble the nucleotide sequences. Gapped BLASTx at the
National Center for Biotechnology Information (NCBI) was used to search
for homologous sequences in the database. ORF Finder at NCBI was used
to identify potential ORFs in the sequences. The terminator program in
the GCG package was used to search for terminator-like sequences. The
ProtParam program at ExPASy was used to calculate the theoretical
parameters including molecular weight, isoelectric point, and
hydrophobicity of each deduced amino acid sequence. Hydropathy plots
were obtained by using the ProtScale program at ExPASy according to the
method of Kyte and Doolittle (24) with a window size of 9. The DAS (dense alignment surface method) (10) transmembrane
segment prediction program was also used to predict transmembrane
domains. Potential signal peptide cleavage sites were analyzed by using
SignalP (37). Overall amino acid sequence comparison was
done with the Bestfit program in the GCG package, using the default
parameters. Potential ribosome-binding sites (RBSs) and promoter
sequences were examined manually.
Elution of antibodies specific to the polysaccharide.
Cell
lysates of TX5159 were treated with proteinase K, subjected to
SDS-PAGE, transferred to nitrocellulose membranes, and incubated with
one of the patient sera as described above. The membranes were then
incubated with 10 ml of 100 mM glycine (pH 2.5) for 30 min at room
temperature. After neutralization with 1 ml of 1 M Tris (pH 8.0), the
solution was transferred to a clean tube and stored at
20°C until
ready to use (16).
Nucleotide sequence accession number. The nucleotide sequence reported here was submitted to GenBank under accession no. AF071085.
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RESULTS |
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Periodate treatment of E. coli(pTEX5159) lysates. In our previous study, TX5159 (formerly BO4B6I) was found to react with four patient sera but not with a rabbit serum prepared against surface protein extracts from an E. faecalis strain isolated from a patient with endocarditis (57). The supernatant from an overnight culture of TX5159 also reacted with one of the patient sera in a dot blot (data not shown). The antigenic material in the TX5159 cell lysates was resistant to extensive proteinase K degradation, suggesting the material was not a protein. To further examine the nature of this antigen, the lysate was subjected to treatment with sodium metaperiodate, which preferentially oxidizes carbohydrates, and then subjected to Western blot analysis using one of the patient sera (Fig. 1). The immunostaining disappeared completely after periodate treatment, suggesting that the antigenic material is a carbohydrate. The material was produced in E. coli in sufficient amounts so that after a 1:32 dilution of the sample (equivalent to 3 to 4 µl of the overnight culture), there was still a strong reaction on the Western blot. The appearance of the diluted material in the Western blot resembled the ladder pattern seen with repeating units of polysaccharides; 10 bands could be clearly observed. A cosmid clone previously found to encode a protein antigen, the autolysin of E. faecalis (57), was used as a control. This antigen band disappeared after proteinase K treatment but remained intact after incubation with periodate.
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874, which lacks the entire rfb region for
O-antigen biosynthesis. The cell lysates of TX5159 was subjected to
proteinase K treatment and Western blotting to examine whether any
E. coli rfb genes were involved in generating the
immunoreactive ladder pattern. The pattern of TX5169 was the same
pattern as that of TX5159 (data not shown.
DNA sequencing of pTEX5159 and sequence analysis of contig C. DNA sequencing resulted in four cotigs (A to D) along the insert of pTEX5159 (Fig. 2). The total number of bases sequenced is 94,434, and the total unique sequence is 34,170 bases long. The average coverage of the four contigs is 2.76×, and the coverage of contig C, is 3×, slightly higher than for the other contigs. About 17.5% of the total unique sequence are single pass, most at the ends of each contig. A restriction map of the 43-kb insert of TX5159 was generated by using the information from DNA sequencing and restriction enzyme digestion (RED) analysis of transposon insertion clones made by in vitro tranposition (described below) (Fig. 2). Based on the restriction map, gaps between contigs B and C and between contigs C and D should be less than 500 bp, while a gap of about 4.5 kb is present between contigs A and B. Database comparison of the sequences from the four contigs showed that contig C contains ORFs with similarity to genes involved in polysaccharide biosynthesis.
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35 and
10 like) sequences were found
upstream of orfde2, orfde3, orfde4,
orfde5_6, orfde6, orfde11, and orfde16. However, since enterococcal DNA has high A+T
content, the apparent promoter-like sequences may not be real
promoters, and functional analysis such as primer extension or
mutagenesis will be needed to verify the true promoter regions.
The 3' end of orfde4 overlapped the 5' end of
orfde5 for 74 bp; thus, these two ORFs could be
transcriptionally and translationally coupled. The intergenic regions
from orfde6 to orfde10 are 12, 24, 35, and 58 bp,
respectively; these could form a transcriptional unit. The intergenic
regions from orfde11 to orfde13 are 12 and 13 bp, respectively. The 3' end of orfde13 overlapped the 5' end of
orfde14 for 11 bp; therefore, orfde11 to
orfde14 could be a transcriptional unit. There is a 221-bp
intergenic region between orfde14 and orfde15,
but no promoter-like sequences were identified. Analysis of
terminator-like sequences using the terminator program in the package
GCG revealed many candidate sequences, including some within genes, and
so the significant of these is not clear.
Database similarities of the genes in contig C and characteristics of the deduced gene products. BLASTx was performed to search for sequence similarities in the databases (Table 4). Orfde1 showed strong similarity with a putative methionine aminopeptidase A (map) from Synechocystis sp. (21) and various other organisms. Orde2 showed some similarity to the serum resistance locus BrkB protein of Bordetella pertussis (11), which is required for the resistance of B. pertussis to complement-dependent killing by normal human serum and contains domains with homology to some transporters. Hydrophobicity analysis indicated that the orfde2 gene product is a hydrophobic protein with four to six potential transmembrane regions. A putative signal peptide cleavage site was found between amino acids 50 and 51 (LTA-VG).
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-N-acetylglucosaminyltransferase encoded by the rfe
genes from various organisms, including E. coli
and Bacillus subtilis, and a lipophilic protein which
affects bacterial lysis rate and methicillin resistance level
(llm) of Staphylococcus aureus (29).
A potential signal peptide cleavage site was found between amino
acids 26 and 27 of Orfde3 (IIP-QD). Hydropathy plot indicated that
Orfde3 is highly hydrophobic with 10 to 11 potential
transmembrane domains, similar to the E. coli Rfe
protein (31). This E. coli enzyme
catalyzes the transfer of GlcNAc onto undecaprenyl
phosphate to synthesize GlcNAc-pyrophosphorylundecaprenol, the first
lipid-linked intermediate in the biosynthesis of enterobacterial
common antigens (31), and was shown to be required for the
initial step in the formation of repeating units of several O
antigens (1, 41).
BLASTx results showed that Orfde6 to Orfde9 had extremely
strong sequence homology with gene products glucose-1-phosphate thymidyltransferse, dTDP-4-dehydrorhamnose 3,5-epimerase,
dTDP-glucose-4,6-dehydratase, and
dTDP-4-keto-L-rhamnose reductase,
respectively, of various bacteria (Table 4). These four enzymes
catalyze the biosynthesis of dTDP-rhamnose from
glucose-1-phosphate. The overall amino acid sequences of Orfde6
to Orfde9 were compared with the corresponding translated
sequences from two gram-positive and three gram-negative organisms: cps19fLMNO from the Streptococcus
pneumoniae type 19F capsular polysaccharide gene cluster (13,
32), rmlACB and rmlD of the
Streptococcus mutans dTDP-rhamnose biosynthesis pathway (51, 52), rfbBDAC from the E. coli O7 rfb gene cluster (30), rmlBDAC from the Salmonella typhimurium
LT2 rfb gene cluster (20), and rfbBDAC
from the Shigella flexneri type 2a rhamnose
biosynthesis operon (28) (Fig.
4). Orfde6 showed high similarities with
the glucose-1-phosphate thymidyltransferase from all five organisms, being from 70 to 78% identical. Orfde8 showed 80 and 81% identity to the cps19fN and rmlC gene products from
the two gram-positive organisms, while its identity to
the gram-negative proteins was lower (46 to 48%) but at the same level
as the identity between the streptococal and gram-negative proteins (47 to 50%). This was also observed with Orfde9, which showed higher
identities to the two streptoccal proteins (62 and 61%) than to
the gram-negative ones (37 to 40%). However, Orfde7 showed
stronger identities to the three gram-negative proteins (53 to 55%)
than to the gram-positive ones (both 34%). Orfde6 to Orfde9 are
generally hydrophilic, and the hydropathy plots of Orfde6 to Orfde9
exhibited remarkable similarities to those of the corresponding
sequences from these other organisms (data not shown).
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Sequence analysis of contig D. Contig D has 2,943 bases. One ORF and 1,029 bp was identified in the middle of contig D and did not reveal any database similarities. The end of contig D was from vector pBeloBAC11. The rest of the sequence in the contig did not show any similarities to sequences in the database.
Immunoscreening of TX5159 with transposon insertions.
We
screened 282 transposon insertion clones, generated by in vitro
transposition of a Tn7 derivative, by using a patient serum and subjected immunonegative clones to a second screen. Ten
clones, DH5
(pTEX5159D) to DH5
(pTEX5159M), were found
to be immunonegative. Five of the 10 cones had single insertions in
EcoRI fragment r4, while the other five had double
insertions, with one in r4 and the other in either r1 or r5.
Clones with single insertions in only r1 or r5 were still
immunopositive, suggesting that the insertions in r4 were responsible
for the loss of the immunoreactivity of these clones. Cosmid DNA
from three clones, DH5
(pTEX5159D), DH5
(pTEX5159E), and
DH5
(pTEX5159F), were transformed into S
874, and the
transformants were tested by colony immunoblotting.
S
874(pTEX5159D) was negative, while transformants with
pTEX5159E and pTEX5159F were not able to regrow after
the initial appearance on the primary transformation plates.
Characterization of transposon insertion mutants.
To
determine the sites of the insertions, cosmid DNA from the 10 clones that were immunonegative was prepared and subjected to PCR
amplification (Table 5). All insertions
in EcoRI fragment r4 were localized to a small region, shown
as a black bar in Fig. 3. PCR products amplified by using primer pairs
GW248-NLC94 and GW250-NLC272 from three immunonegative clones,
DH5
(pTEX5159D), DH5
(pTEX5159E), and
DH5
(pTEX5159F), were gel purified and subjected to DNA
sequencing. The sequences showed that the insertions were in
orfde4 and orfde5, which encode potential
glycosyltransferases (Fig. 3). The insertion in DH5
(pTEX5159D)
was at nucleotide position 4191 in contig C, 361 bp downstream of the
start site of orfde4 (equivalent to amino acid 119 from the
N terminus of Orfde4); the insertion in DH5
(pTEX5159E) was at 5238, in the middle of orfde5 (equivalent to amino acid 214 from
the N terminus of Orfde5); and the insertion in DH5
(pTEX5159F) was
at 4701, 105 bp downstream of the start of orfde5
(equivalent to amino acid 35 from the N terminus of Orfde5). The sites
of insertion in the other seven clones were estimated based on their
PCR product sizes in relation to those from the three clones that had
been sequenced. It appeared that all were in orfde4 or
orfde5. The insertion in DH5
(pTEX5159L) could be either
at the end of orfde4 or at the beginning of
orfde5.
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), and the resulting construct was designated
pTEX5175. The plasmid was transformed into the immunonegative insertion
mutant DH5
(pTEX5159D) as well as into DH5
. Cell lysates of
the transformants were treated with proteinase K and
subjected to Western blot analysis. Plasmid pTEX5175 restored
the immunoreactivity of DH5
(pTEX5159D), while
DH5
(pTEX5175) was immunonegative (Fig.
5).
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. When
transformed into S
874, the five clones with insertions in r7
remained positive. However, S
874 transformants of pTEX5159S,
pTEX5159T, and pTEX5159U seemed to have undergone deletions or
rearrangements in S
874, based on RED analysis, and were
immunonegative.
Complementation by E. coli O-antigen biosynthesis
genes.
After RED analysis of random clones, three clones,
DH5
(pTEX5159A), DH5
(pTEX5159B), and
DH5
(pTEX5159C) were found to have insertions in r4 but
still reacted in colony immunoblots. PCR products amplified by
using primer pairs GW283-NLC94 and GW280-NC272 from these three clones
were subjected to DNA sequencing (Table 5). The insertion in
DH5
(pTEX5159C) was at nucleotide position 3728 in contig C, which is
in the region between orfde3 and orfde4 (Fig. 3).
This finding suggested that orfde4 was transcribed
independently.
(pTEX5159B) was at nucleotide position 8388 in
the middle of orfde8 (equivalent to amino acid 210 from the
N terminus of Orfde8), which is highly similar to the gene for
dTDP-glucose-4,6-dehydratase, the second enzyme in the
dTDP-rhamnose biosynthesis pathway of various bacteria. Rhamnose is
a major component in the O antigens of gram-negative
bacteria and in capsules of some gram-positive bacteria.
Thus, it was surprising to find that DH5
(pTEX5159B) was
still immunopositive. Since most E. coli K-12 strains
should carry genes for dTDP-rhamnose synthesis (27, 59),
however, it was possible that DH5
(pTEX5159B) was
complemented by the E. coli genes. To test this, cosmid
DNA from DH5
(pTEX5159B) was transformed into E. coli S
874, which lacks the entire rfb region. The
transformant was found to be immunonegative in colony blots (Table 5),
indicating that complementation of the insertion mutation occurred in
DH5
but not in S
874.
DH5
(pTEX5159A) had an insertion at nucleotide position 3525, which is 187 bp upstream of the 3' end of orfde3 (equivalent to 61 amino acids from the C terminus of Orfde3). Orfde3 is similar to
the undecaprenyl-phosphate
-N-acetylglucosaminyltransferase that catalyzes the
transfer of GlcNAc to the lipid carrier, the first step in the
synthesis of the repeating units of several O antigens (1,
41). Since the E. coli rfe gene is outside the
rfb region, both DH5
and S
874 possess this gene. To
test the possibility that this clone was being complemented by the rfe gene of E. coli, cosmids pTEX5159A and
pTEX5159 were transformed into an E. coli rfe strain,
21548, as well as into the parent strain AB1133
(rfe+). The cell lysates of the transformants
were subjected to proteinase to proteinase K treatment and Western blot
analysis as described above. All four clones showed the characteristic
ladder pattern as with TX5159 (data not shown).
Detection of the expression of this polysaccharide in E. faecalis.
Antibody was eluted from nitrocellulose membranes
following Western blotting of proteinase K-treated extracts from TX5159 with a patient serum. The eluted antibody reacted with TX5159 but not
with the cloning host DH5
. The eluted antibody was used to examine
E. faecalis OG1RF and TX52 (57) under
different growth conditions, including exposure to horse and rabbit
sera, at different temperatures, and in minimal growth media. Several
clinical from patients with E. faecalis endocarditis
were also examined after growth in BHI broth. These clinical strains
include isolates from patients from whom the tested sera were
collected. No positive reaction was detected (data not shown).
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DISCUSSION |
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In a previous study, we described a cosmid clone of E. faecalis (TX5159) that produced proteinase K-resistant antigenic material in E. coli (7). In this report, we provide evidence that the antigenic material was carbohydrate in nature and that its production did not involve the E. coli rfb genes. Furthermore, the antigen appears as a ladder after PAGE, suggesting a structure of repeating units, such as those of polysaccharides. Since the clone contains a number of genes with sequence similarity to polysaccharide biosynthesis functions, we conclude that genes for the biosynthesis of an enterococcal antigenic polysaccharide had been cloned and expressed in E. coli.
Early studies indicated that antigenic polysaccharides could be
detected in the cell walls of enterococci and, moreover, that many of
these were rhamnose-containing polysaccharides (6, 19, 45,
47). However, no studies to our knowledge suggested the presence
of capsules in enterococci. In our previous report, TX5159 was found to
react with four patient sera but not with a rabbit serum prepared
against surface protein extracts from an E. faecalis
strain grown in BHI (57). The rabbit serum was made from
rabbits immunized with zwittergent surface extracts of E. faecalis, and it is possible that the polysaccharide was not
present. In this study, we failed to detect the antigen in E. faecalis OG1RF and TX52 (57) under
different growth conditions or in several E. faecalis
clinical isolates. This raised the possibility that the antigen is due
to E. coli and not enterococcus. PCR amplification of
OG1RF genomic DNA by using intragenic primers to orfde2 to orfde16 resulted in PCR products of the expected sizes (data
not shown). Southern blot analysis using pTEX5159 DNA as a probe
against genomic DNA of OG1RF, TX52, and DH5
indicated that the probe hybridized to OG1RF and TX52 but not to DH5
(data not shown), suggesting that they are enterococcal genes. Therefore, in this model,
the patients would also be making antibody against the E. coli polysaccharide, and the enterococcal genes would be
complementing E. coli genes that were defective in the
laboratory strains. We note that in our screens for immunonegative
transposon mutants in DH5
, where all the mutants carried insertions
in orfde4 and orfde5, orfde4 shows
some sequence similarity to orf264 in the gnd-rfc
intergenic region of E. coli (27, 59). In
most of the E. coli K-12 strains, there is an
IS5 insertion in orfde264, which is responsible
for the loss of O-antigen production in these K-12 strains. This
finding raised the possibility that orfde4 complemented the
defective orf264 of DH5
and thus restored its ability to
make an O antigen. This possibility can be ruled out because of the
following observations. Firstly, unlike DH5
, which still maintains
most of the rfb genes, S
874 lacks the entire rfb region for O-antigen biosynthesis. However, TX5169 had
the same reaction pattern with the patient serum as TX5159. Second, plasmid pTEX5175, which contains the complete sequence of
orfde4, orfde5, and their flanking regions, alone
did not make DH5
immunoreactive. Thus, the production of the
antigenic polysaccharide required the presence of pTEX5159 but not the
E. coli rfb genes.
The four patient sera used were collected from endocarditis patients infected with E. faecalis in different regions in the United States. The fact that TX5159 reacted strongly with all four sera suggested that the polysaccharide was produced in all of these patients and was not due to one particular strain or one particular patient. It has long been known that the biosynthesis of many polysaccharides (e.g., E. coli group IA and group II K antigens, and colanic acid [56]) is regulated, and many regulatory strategies have been used to achieve control of expression in response to different changes in the environment. Thus, expression of the polysaccharide in E. faecalis may be controlled so that it is only expressed under certain conditions, such as those found in infection. The use of more sensitive detection methods with a wider range of growth conditions is under way. Preliminary results from reverse transcription-PCR using primers to orfde4 and orfde6 suggest that the mRNA ttanscripts to those two genes could be detected in RNA extracts from OG1RF in exponential phase but not in stationary phase (data not shown). The other ORFs in contigs C and D are now being tested.
Comparison of the ORFs in contig C to database sequences revealed
similarities to genes involved in polysaccharide biosynthesis and
export from both gram-negative and gram-positive organisms. Orfde3 showed similarities to the undecaprenyl-phosphate
-N-acetylglucosaminyltransferase encoded by the
rfe genes from various organisms and Llm of S. aureus (29). The activity of the lipophilic protein
encoded by llm is not known, although it has been proposed
to be involved in the metabolism of cell surface components such as
peptidoglycan (29). Rfe is required for the synthesis of the
first lipid-linked intermediate in the biosynthesis of enterobacterial
common antigen and several O antigens (1, 41, 42).
Hydropathy plots of the enterococcal Orfde3 and Rfe of E. coli showed remarkable similarities between the two, indicating
similar overall distribution of hydrophobic residues. However, a
Tn7 insertion near the 3'end of orfde3
(pTEX5159A) did not affect the expression of the polysaccharide
in E. coli 21548 (rfe), S
874
(rfb), AB1133 (rfe+), or
DH5
. Several possibilities may explain this result: (i) the
C-terminal 60 or so amino acids may not be required for enzymatic activity, (ii) the gene is not required for the synthesis of the polysaccharide in E. coli, and (iii) orfde3
codes for some other function(s) instead of the undecaprenyl-phosphate
-N-acetylglucosaminyltransferase and is complemented by
similar functions from E. coli. Further mutational
studies of orfde3 may help answer some of these
questions. One conclusion that can be drawn from results with
pTEX5159A is that the insertion did not affect the expression of
downstream genes, consistent with the result for
DH5
(pTEX5159C), which had an insertion between
orfde3 and orfde4 and was immunopositive, as
well as the observation that orfde4 appeared to have its own promoter, based on DNA sequence.
orfde6 to orfde9 showed high sequence
similarities to genes in the dTDP-rhamnose biosynthesis pathway of
various organisms. As noted above, rhamnose has been found as a
component in enterococcal polysaccharides; the transposon insertion in
orfde8 (pTEX5159B) resulted in loss of
immunoreactivity in S
874 (rfb) but not in DH5
. This
finding indicated that the E. coli rfbBDAC genes could provide this function and provides further support for the conclusion the orfde6 to orfde9 encode a dTDP-rhamnose
biosynthesis pathway.
The G+C contents of orfde6 to orfde9 are very close to each other, from 38.2 to 38.5%, while those of the other ORFs in the cluster vary from 32.6 to 40.6%, suggesting that orfde6 to orfde9 may have originated from one source while the other ORFs in the cluster may have been assembled from several sources during evolution. This is consistent with observations in other bacteria such as E. coli and Salmonella spp. (20, 30, 49, 55, 59).
Several reports have shown the involvement of ABC transport systems in the translocation of sugar polymers across the cytoplasmic membrane in both gram-negative and gram-positive bacteria )14, 25, 56, 61) or the presence of ABC transporter genes within polysaccharide biosynthesis clusters (5, 61). It seems that the use of ABC transporters could be one of the common mechanisms for exporting sugar polymers. The strong sequence similarities of orfde11 and orfde12 to components in the ABC transport system, in particular to the ABC tranporters for teichoic acids of B. subtilis (25) and the O antigen of M. xanthus (14), suggest that these two ORFs may play similar roles (14) in the export of the E. faecalis polysaccharide to the cell surface.
The products of six ORFs, orfde4, orfde5,
orfde5_6, orfde10, orfde15, and
orfde16 (3' partial), showed various degrees of similarities
to glycosyltransferases. One feature of these ORFs is that, except for
orfde10, they encode hydrophilic proteins, consistent with
the findings for other glycosyltransferases and the notion that the
assembly of repeat units occurs on the cytoplasmic side of the
membrane. The sequence homology of these ORF products to
glycosyltransferases was not very strong, as has been recognized in general among glycosyltransferases. Thus, it would be difficult to
propose, based on sequence comparison, the substrate specificity encoded by these ORFs. Further analysis, such as enzyme activity assays, is needed to elucidate their functions. Transposon
insertions in orfde4 and orfde5
abolished the immunoreactivity in both DH5
and S
874,
suggesting that these two genes are required for the production of the
polysaccharide and that there are not equivalent functions in the
E. coli host strains. The introduction of pTEX5175 into DH5
(pTEX5159D) restored its immunoreactivity,
suggesting that its transposon insertion did not affect the expression
of orfde6 and downstream genes. This is consistent with the
results from sequence analysis that orfde4 and
orfde6 may be transcribed from their own promoters and are
in two individual transcriptional units.
Analysis of Tn7 transposon insertion mutants also provided evidence that orfde1 and orfde2 are not essential for antigen production. The involvement of orfde3 is not certain and requires further investigation. No Tn7 insertions in the other ORFs in contig C were identified. However, based on sequence analysis, it is likely that the other ORFs are also involved in the synthesis and export pathway. Tn7 insertions in contig D resulted in large deletions or rearrangement in the cosmid, suggesting that disruption in this region may be toxic to the host. Whether contig D is required in the biosynthesis pathway remains unclear.
In conclusion, a gene cluster of OG1RF was cloned and produced an antigenic polysaccharide in E. coli. Analysis of DNA sequences and transposon mutants indicated that it is a multicistronic region containing genes for dTDP-rhamnose synthesis, assembly of repeat units, and export of the polysaccharide. This is the first report of an enterococcal gene cluster involved in the biosynthesis of an antigenic polysaccharide. Further study of this cluster and the effects of such a polysaccharide on bacterial cell surface permeability, response to antimicrobial agents, and the host immune system may have important implications for research in enterococci as well as for polysaccharides in other organisms.
| |
ACKNOWLEDGMENTS |
|---|
We are grateful to Matthew C. Biery and Nancy L. Craig, Department of Molecular Biology and Genetics, Johns Hopkins University, for performing the in vitro transposition reactions, and as well as Huy Phan, University of Texas Medical School at Houston, for mapping the transposon insertion clones. We thank Chris Whitfield, Department of Microbiology, University of Guelph, Guelph, Ontario, Canada, and Paul Rick, Department of Microbiology, Uniformed Services of the Health Sciences, for providing strains and instructive advice. We also thank Miguel Valvano, Department of Microbiology and Immunology, University of Western Ontario, London, Ontario, Canada, for helpful advice.
This work was supported by the NIH grant AI 33516 to Barbara E. Murray.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Department of Microbiology and Molecular Genetics, University of Texas Medical School, 6431 Fannin St., Houston, TX 77030. Phone: (713) 500-6083. Fax: (713) 500-5499. E-mail: georgew{at}utmmg.med.uth.tmc.edu.
Editor: E. I. Tuomanen
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