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Infection and Immunity, August 1999, p. 3998-4007, Vol. 67, No. 8
0019-9567/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Cloning, Expression, and Immunological Evaluation
of Two Putative Secreted Serine Protease Antigens of
Mycobacterium tuberculosis
Yasir A. W.
Skeiky,1,*
Michael J.
Lodes,1
Jeffrey A.
Guderian,1
Raodoh
Mohamath,1
Teresa
Bement,1
Mark R.
Alderson,1 and
Steven
G.
Reed1,2
Corixa Corporation1
and Infectious Disease Research
Institute,2 Seattle, Washington 98104
Received 23 February 1999/Returned for modification 14 April
1999/Accepted 27 May 1999
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ABSTRACT |
Culture filtrate proteins (CFP) of Mycobacterium
tuberculosis have been shown to contain immunogenic components
that elicit at least partial protective immunity against
Mycobacterium infection. To clone genes encoding some of
the immunogenic proteins, we made a high-titer rabbit anti-CFP serum
and used it to screen an M. tuberculosis genomic expression
library in Escherichia coli. In this paper, we describe the
molecular cloning of two new protein components of CFP and identified
them as members of the serine protease gene family. Their open reading
frames contain N-terminal hydrophobic secretory signals consistent with
their detection in CFP. The predicted molecular masses of the mature,
fully processed forms of both antigens are ~32 kDa, in agreement with
their observed sizes on immunoblots of CFP probed with polyclonal
rabbit antisera made to the recombinant proteins. Thus, these proteins
have been designated MTB32A and MTB32B. Interestingly, and despite 66%
amino acid sequence homology between the two proteins, polyclonal
rabbit antisera made to each of the recombinant proteins were found to be specific for the respective immunizing antigens. The recombinant proteins were also evaluated in in vitro assays with donor peripheral blood mononuclear cells (PBMC) from healthy purified protein derivative (PPD)-positive individuals of diverse ethnic backgrounds. MTB32A but
not MTB32B stimulated PBMC from healthy PPD-positive donors but not
from PPD-negative donors to proliferate and secrete gamma interferon.
MTB32A is encoded by a single-copy gene which is present in both
virulent and avirulent strains of the M. tuberculosis complex and the BCG strain of Mycobacterium bovis but
absent in the environmental mycobacterial species tested. In addition,
nucleotide sequence comparison of mtb32a of the avirulent
H37Ra strain and the virulent Erdman strain, as well as with the
corresponding sequences (identified in the databases) of strain H37Rv
and the clinical isolate CSU93, revealed 100% identity. MTB32A,
therefore, represents a candidate for inclusion in subunit vaccine
development. Finally, the possible role of MTB32 serine proteases as a
virulence factor(s) during Mycobacterium spp. infection is discussed.
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INTRODUCTION |
Tuberculosis remains one of the
world's most serious health threats not only in developing countries
but also in industrialized countries, where a resurgence, particularly
with human immunodeficiency virus infection and the emergence of
drug-resistant strains, underscores the need for an effective vaccine
against this important disease (15, 23, 41). Approximately 2 billion people are infected worldwide, and an estimated 2.9 million
deaths due to tuberculosis occur annually (25, 38). The only
vaccine currently in use is the live, attenuated strain of
Mycobacterium bovis, bacillus Calmette-Guérin (BCG)
(7, 9). Although vaccination with BCG is widely practiced,
its efficacy is reported to vary considerably among different clinical
trials and geographically distinct populations (10).
Recently, there has been increased interest in the secreted
antigens of mycobacteria as candidates for a subunit-based vaccine. This stems from the observation that immunization of mice with live but
not killed preparations of Mycobacterium tuberculosis resulted in the generation of a partially protective response (31). In addition, culture filtrate proteins (CFP) obtained from in vitro-cultivated M. tuberculosis have been shown to
offer some degree of protection when used as vaccines in animal models of tuberculosis (1, 19, 20, 32, 33). These findings, combined with the ability of CFP to stimulate proliferation and cytokine production from T cells of infected mice, guinea pigs, and
purified protein derivative-positive (PPD+) human donors
(2, 5, 12, 18, 19, 21, 31, 33, 39, 43, 44) have led to the
conclusion that CFP are an important source of candidate antigens for a
subunit vaccine against tuberculosis. Thus, several laboratories are
currently working toward the identification of proteins that are
secreted or shed by M. tuberculosis. In this paper, we
describe the molecular cloning and immunological evaluation of two new
protein components of CFP, MTB32A and MTB32B, and identify them as
being encoded by members of the serine protease family.
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MATERIALS AND METHODS |
Mycobacterial strains.
M. tuberculosis H37Ra, H37Rv,
and Erdman were provided by Sean Skerritt (Seattle VA Hospital).
M. tuberculosis C is a clinical isolate provided by Lee
Riley (University of California, Berkeley). Pelleted samples of
M. bovis (BCG) and Mycobacterium leprae were kindly provided by Paul Tan (Genesis Corp., Auckland, New Zealand). Other species of mycobacteria were obtained from the American Type
Culture Collection (Manassas, Va.): M. tuberculosis H37Ra (ATCC 25177), M. tuberculosis Erdman (ATCC 35801)
Mycobacterium scrofulaceum (ATCC 19981), Mycobacterium
smegmatis (ATCC 19420), Mycobacterium fortuitum (ATCC
6841), Mycobacterium malmoense (ATCC 29571), and
Mycobacterium gordonae (ATCC 14470). Mycobacterial genomic
DNA was prepared as previously described (12).
Secreted proteins.
M. tuberculosis H37Rv was grown in
90 ml of Sauton's medium (3) for 18 days at 37°C in 5%
CO2. The medium (containing CFP) was harvested after 18 days of growth by centrifugation at 2,000 × g for 20 min, and the supernatant was sterilized by passage through a
0.2-µm-pore-size filter. The filtrate was concentrated with an Amicon
3 Centriprep concentrator (Amicon, Beverly, Mass.) to 1/100 of the
original volume, and the protein content was determined with a
bicinchoninic acid protein assay (Pierce, Rockford, Ill.). Secreted
proteins from M. tuberculosis Erdman and H37Rv were also provided by John Belisle, Colorado State University, produced through
National Institute of Allergy and Infectious Diseases-National Institutes of Health Tuberculosis Research Materials contract N01-AI-25147.
Generation of rabbit antisera.
Rabbit antisera to M. tuberculosis (Erdman and H37Rv strains)-secreted proteins and the
recombinant antigens were prepared by injecting 200 µg of protein
with 1 ml of incomplete Freunds adjuvant (Life Technologies, Grand
Island, N.Y.) and 100 µg of muramyl dipeptide subcutaneously
followed with a boost of 100 µg of protein incomplete Freunds
adjuvant given subcutaneously 6 weeks later and a final boost of 50 µg administered intravenously 1 month later. The animals were
sacrificed 1 week after the second boost, and sera were stored in
aliquots at
20°C.
Library preparation and serological expression screening.
Genomic DNA from M. tuberculosis H37Ra and Erdman was
fragmented for library generation by sonication, yielding DNA fragments in a size range of 300 to 4,000 bp. The ends were blunted with Klenow
polymerase, ligated to EcoRI adapters, and subcloned into EcoRI predigested
ZAP bacteriophage arms according to the
manufacturer's protocols (Stratagene, La Jolla, Calif.). Phage were
packaged with Gigapack II packaging extracts (Stratagene) as
recommended. Rabbit anti-CFP sera were preadsorbed against total
Escherichia coli proteins and were used to screen the
M. tuberculosis H37Ra genomic expression libraries (10,000 PFU/plate; 60,000 PFU total) following a 1:250 dilution. Reactivity was
assessed as previously described (25) with
125I-protein A, followed by autoradiography to detect
immunoreactive plaques. Following plaque purification, excision of the
pBSK(
) phagemid was carried out according to the manufacturer's
protocol (Stratagene). Plasmid DNA was purified with an anion-exchange resin (Qiagen, Chatsworth, Calif.) as recommended by the manufacturer. DNA was sequenced by the dye terminator technique with an ABI 373-A
Stretch DNA sequencer (Applied Biosystems, Inc., Foster City, Calif.).
High-level expression and affinity purification of recombinant
mycobacterial antigens.
Oligonucleotide PCR primers were designed
to amplify the mature (devoid of secretory sequence) forms or
overlapping amino- and carboxy-terminal portions of MTB32A and MTB32B.
The secreted form of MTB32A was amplified with the oligonucleotide
primers 5' (5'-TTA CAT ATG GCT AGC CAT CAC CAT
CAC CAT CAC AGC AAT TCG CGC CGC CGC TCA C-3') and 3'
(5'-AAA GGG GGA TGT GCT GCA AGG CG-3') (underlining,
boldface, and italics are defined below). The amino and carboxy termini
of MTB32A (N- and C-terminal halves, respectively) were cloned with the
oligonucleotide primers 5' (5'-CAA TTA CAT ATG
CAT CAC CAT CAC CAT CAC GCC CCG CCG GCC TTG TCG CAG
GAC-3') and 3' (5'-GAT TAG GAA TTC CTA GGA CGC GGC CGT
GTT CAT AC-3') for the MTB32A N-terminal part and 5' (5'-TTA CAT ATG GCT AGC CAT CAC CAT CAC CAT CAC ACG GCC
GCG TCC GAT AAC TTC-3') and 3' (5'-GTA CGG AAT TCG TAA
AAC GAC GGC CAG T-3') for the MTB32A C-terminal part.
Fragments comprising the full-length and amino- and carboxy-terminal
portions of MTB32B were PCR amplified with the following primer pairs:
5' (5'-CAA TTA CAT ATG CAT CAC CAT CAC CAT CAC GGT TTT ACC GGT CGG CAT CGG CAC-3') and 3'
(5'-GTA CGG AAT TCG ACC TTC ATC ACT GCT CCG CCT TG-3') for
the mature form of MTB32B, 5' (5'-CAA TTA CAT ATG
CAT CAC CAT CAC CAT CAC GCG CCA AGC ATC CCC GCA GCA AAC ATG
C-3') and 3' (5'-GTA CGG AAT TCC TAC GTG GCA ATG GCC
GAG TTG ACT C-3') for the amino-terminal half, and 3'
(5'-CAA TTA CAT ATG CAT CAC CAT CAC CAT CAC
GTC CGT GTT CAG GGC GTC TCC G-3') and 3' (5'-GTA
CGG AAT TCG TAA AAC GAC GGC CAG T-3') for the carboxy-terminal half.
Sequence comprising antigen 85B (13, 29) was cloned by PCR
amplification (of genomic DNA isolated from the H37Ra strain) with
primers designed to amplify the entire mature-secreted portion. For
85B, the oligonucleotides used for PCR amplification contained the
following sequences: 5'-CAA TTA CAT ATG CAT CAC
CAT CAC CAT CAC TTC TCC CGG CCG GGG CTG C-3' (5') and
5'-GTA CGG AAT TCC CTT CGG TTG ATC CCG TCA GC-3' (3').
The 5' oligonucleotides contain an NdeI restriction site
preceding the ATG initiation codons (underlined) followed by nucleotide sequences encoding six histidines (boldface) and sequences derived from
the gene (italics). The resultant PCR products were digested with
NdeI and EcoRI and subcloned into the pET17b
vector similarly digested with NdeI and EcoRI for
directional cloning. Ligation products were initially transformed into
E. coli XL1-Blue competent cells (Stratagene) and were
subsequently transformed into E. coli BL-21(pLysE) host
cells (Novagen, Madison, Wis.) for expression.
Production and purification of recombinant proteins.
The
recombinant proteins were expressed in E. coli with six
histidine residues at the amino-terminal portion with the pET plasmid
vector (pET17b) and a T7 RNA polymerase expression system (Novagen).
E. coli BL-21(DE3)pLysE (Novagen) was used for high-level expression. Recombinant (His-tagged) antigens were purified from the
soluble supernatant or the insoluble inclusion body of 500 ml of
isopropyl-
-D-thiogalactopyranoside (IPTG)-induced batch cultures by affinity chromatography with the one-step QIAexpress Ni-nitrilotriacetic acid (NTA) agarose matrix (Qiagen) in the presence
of 8 M urea. Briefly, 20 ml of an overnight saturated culture of BL-21
containing the pET construct was added to 500 ml of 2× yeast
extract-tryptone medium containing 50 µg of ampicillin per ml and 34 µg of chloramphenicol per ml and grown at 37°C with shaking. The
bacterial cultures were induced with 2 mM IPTG at an optical density
(OD) at 560 nm of 0.3 and grown for an additional 3 h (OD = 1.3 to 1.9). Cells were harvested from 500-ml batch cultures by
centrifugation and resuspended in 20 ml of binding buffer (0.1 M sodium
phosphate [pH 8.0], 10 mM Tris-HCl [pH 8.0]) containing 2 mM
phenylmethylsulfonyl fluoride and 20 µg of leupeptin per ml plus one
Complete protease inhibitor tablet (Boehringer Mannheim) per 25 ml.
E. coli was lysed by freeze-thaw followed by brief
sonication and then spun at 12,000 rpm for 30 min to pellet the
inclusion bodies.
The inclusion bodies were washed three times in 1%
3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate (CHAPS) in
10 mM Tris-HCl (pH 8.0). This step greatly reduced the level of
contaminating lipopolysaccharide. The inclusion body was finally
solubilized in 20 ml of binding buffer containing 8 M urea, or 8 M urea
was added directly into the soluble supernatant. Recombinant antigens with His-tagged residues were batch bound to Ni-NTA agarose resin (5 ml of resin per 500-ml induction) by rocking at room
temperature for 1 h, and the complex was passed over a column. The
flowthrough was passed twice over the same column, and the column was
washed three times with 30 ml each of wash buffer (0.1 M sodium
phosphate and 10 mM Tris-HCl, pH 6.3) also containing 8 M urea. Bound
protein was eluted with 30 ml of 150 mM imidazole in wash buffer, and 5-ml fractions were collected. Fractions containing the recombinant antigen were pooled, dialyzed against 10 mM Tris-HCl (pH 8.0) bound one
more time to the Ni-NTA matrix, eluted, and dialyzed in 10 mM Tris-HCl
(pH 7.8). The yield of recombinant protein varied from 25 to 150 mg per
liter of induced bacterial culture with greater than 98% purity.
Recombinant proteins were assayed for endotoxin contamination by the
Limulus amebocyte assay (BioWhittaker) and were shown to
contain <100 endotoxin units/mg of protein.
Immunoblot analysis of recombinant MTB32A (rMTB32A) and rMTB32B.
M. tuberculosis (strain H37Rv) total lysate or CFP (2.5 µg
each) as well as 50 ng of the indicated recombinant proteins were separated by electrophoresis on sodium dodecyl sulfate (SDS)-15% polyacrylamide gels and transferred to nitrocellulose with a semidry transfer apparatus (Bio-Rad). Blots, in triplicate, were blocked for
a minimum of 1 h with phosphate-buffered saline (PBS)-1.0% Tween and were probed with anti-CFP, anti-MTB32A, anti-MTB32B, and
anti-85B polyclonal rabbit antisera diluted 1:500 in PBS-0.1% Tween
20 as indicated. Reactivity was assessed as previously described (37) with 125I-protein A, followed by autoradiography.
Southern analysis.
Genomic DNA was prepared by standard
techniques (36) and was digested with PstI. One
microgram of each digest was run on a 1% agarose gel and stained with
ethidium bromide to confirm equivalent loading of each lane prior to
overnight transfer to a Nytran membrane. Random hexamer
32P-radiolabeled insert DNA was prepared by the random
priming method (17) and hybridized overnight at 65°C.
Blots were washed at 65°C twice for 15 min each with 2× SSC (1× SSC
is 0.15 M NaCl plus 0.015 M sodium citrate) and 0.1× SSC containing
0.1% SDS.
Immune responses of donor PBMC to rMTB32 antigens.
The
recombinant antigens were evaluated in vitro for their ability to
induce T-cell proliferation and gamma interferon (IFN-
) production
with a panel of peripheral blood mononuclear cells (PBMC) obtained from
healthy PPD+ (indurations of >10 mm) and PPD
individuals of diverse ethnic backgrounds (African, Middle Eastern, Hispanic, European, and Asian). PBMC were obtained from heparanized blood by Ficoll gradient centrifugation or by leukapheresis. PBMC (2 × 105/well) were incubated in 96-well
round-bottomed plates (Costar) in medium only (RPMI with 10% pooled
human serum and gentamicin at 50 µg/ml) or in medium containing
specific antigens at the indicated concentrations. Plates were cultured
for 5 days at 37°C in 5% CO2 and were pulsed with 1 µCi of [3H]thymidine (Amersham) for an additional
18 h. Cells were harvested onto filter mats and counted with a
Matrix 9600 Direct Beta gas scintillation counter (Packard).
Cytokine ELISA.
The levels of supernatant IFN-
were
analyzed by sandwich enzyme-linked immunosorbent assay (ELISA), with
antibody pairs and procedures available from PharMingen. Standard
curves were generated with recombinant mouse cytokines. ELISA
plates (Corning) were coated with 50 µl (1 µg/ml, in 0.1 M bicarbonate coating buffer [pH 9.6]) of a cytokine capture
monoclonal antibody (rat anti-mouse IFN-
; PharMingen; catalog no.
18181D) per well and incubated for 4 h at room temperature. Liquid
was removed, and plates were blocked with PBS-0.05% Tween-1.0%
bovine serum albumin (BSA) (200 µl/well) overnight at 4°C and
washed six times in PBS-0.1% Tween. Standards (recombinant mouse
IFN-
) and supernatant samples diluted in PBS-0.05% Tween-0.1%
BSA were then added for 2 h at room temperature. The plates were
washed as described above and then incubated for 2 h at room
temperature with 100 µl of a second antibody (biotin-rat anti-mouse
IFN-
([catalog no. 18112D; PharMingen]) per well at 0.5 µg/ml
diluted in PBS-0.05% Tween-0.1% BSA. After washing, plates were
incubated with 100 µl of streptavidin-horseradish peroxidase (Zymed)
per well at a 1:2,500 dilution in PBS-0.05% Tween-0.1% BSA at room
temperature for 1 h. The plates were washed one last time and
developed with 100 µl of TMB substrate
(3,3',5,5'-tetramethylbenzidine; Kirkegaard & Perry Laboratories,
Gaithersburg, Md.) per well, and the reaction was stopped after the
color developed with H2SO4, 50 µl/well.
Absorbance (OD) was determined at 450 nm with 570 nm as a reference
wavelength, and the cytokine concentration was evaluated with the
standard curve.
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RESULTS |
Expression cloning and molecular characterization of MTB32A and
MTB32B.
A genomic expression library of the M. tuberculosis avirulent strain H37Ra was screened with a rabbit
antiserum made against CFP of virulent M. tuberculosis
Erdman. Several clones were identified, and two of these,
mtb32a and mtb32b, were pursued further because (i) MTB32A was found to be antigenic in healthy, PPD+
individuals and (ii) both proteins have sequence similarities with
proteins identified from other species implicated in constitution of
virulence factors. Figures 1A and B show
the nucleotide sequences and predicted open reading
frames (ORFs) of mtb32a and mtb32b, respectively.


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FIG. 1.
Nucleotide and deduced amino acid sequences of the
predicted ORF of mtb32a (A) and mtb32b (B) genes.
Residues corresponding to the signal peptide and the mature (secreted)
proteins are indicated. The potential ribosome binding site (SD
sequence) for mtb32a is shown. The ORF of mtb32a
encodes 355 amino acid residues with the first 32 residues comprising
the putative hydrophobic leader sequence. Unlike mtb32a,
mtb32b does not have an obvious ribosome binding site. A
putative hydrophobic signal sequence as well as the mature secreted
form (322 amino acids) is indicated and underlined.
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The insert of the clone containing gene mtb32a (Ra35) is
1,872 bp and contains an ATG start codon preceded by a Shine-Dalgarno (SD) sequence (AGGAGG), a predicted ORF coding for a
~35-kDa protein (355 amino acids) followed by 3' untranslated
sequences. The first 32 amino acids of MTB32A are highly hydrophobic
with a potential signal peptidase cleavage site predicted to result in
the secretion of a 32-kDa mature protein with an estimated isoelectric
point of 4.34 and a net charge of
9.41 at pH 7.0.
The clone comprising gene mtb32b (Ra29) contains an insert
of 1,771 bp but lacks an apparent SD sequence, thus making it difficult to predict the initiator amino acid residue. However, based on sequence
homology with MTB32A and the apparent molecular weight of the mature
form of MTB32B detected in CFP (see below), clone mtb32b
appears to comprise sequences coding for the entire secreted protein.
Figure 1B shows the location of the putative secreted (mature) form of
MTB32B with a predicted molecular mass of 32 kDa (322 amino acids), an
isoelectric point of 4.72, and a net charge of
6.73 at pH 7.0. The
secreted form of MTB32B is in frame with an extended upstream ORF that
presumably comprises the signal sequence. However, given that many of
the CFP thus far identified have short (25 to 50 residues) leader
sequences, we predict that the hydrophobic 42-amino-acid upstream
sequence represents the signal sequence (Fig. 1B). Thus, the
predicted molecular mass of the unprocessed form of MTB32B within the
mycobacterium is similar to that of MTB32A (~35 kDa).
MTB32A and MTB32B are trypsin-like serine proteases.
Comparison of the amino acid sequences of the mature forms of MTB32A
and MTB32B with protein databases (Swiss, PIR, and translated release
104) revealed that these proteins resemble trypsin-like serine
proteases with the classical trypsin active-site triad (His, Asp, and
Ser) comprising not only serine but also histidine and aspartate
residues (16, 30). MTB32A shows a higher degree of homology
(90%; 72% identity and 18% conservative substitution) to a
previously described 34-kDa serine protease antigen of
Mycobacterium paratuberculosis (8) than to MTB32B
(66% overall homology; 35% identity and 31% conservative
substitution) (Fig. 2). A putative serine
protease antigen was also identified on an M. leprae cosmid clone (accession no. U15180). The translated sequence of the M. leprae serine protease homologue shows 57% homology (31%
identity and 26% conservative substitution) with MTB32A and 61%
homology (33% identity and 28% conservative substitution) with
MTB32B.

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FIG. 2.
Comparison of amino acid sequences of MTB32A and MTB32B
with the homologous sequence of M. paratuberculosis (M.para)
(GenBank accession no. S47170) and a putative M. leprae
serine protease antigen (GenBank accession no. U15180). Identical amino
acid residues are shaded solid black, and conservative substitutions
are boxed. All four proteins contain the classical trypsin active-site
triad, His, Asp, and Ser (indicated by asterisks), a feature
characteristic of trypsin-like serine proteases.
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Expression and Western blot analysis of MTB32A and MTB32B.
Several attempts were made to express MTB32A and MTB32B as either
full-length (unprocessed) or mature (devoid of their leader sequences)
proteins with the pET17b expression vector. In the presence of their
leader sequences, the expressing bacterial host grew very slowly, and
upon IPTG induction, growth of the culture was halted and lysis of the
E. coli host was frequently observed. When the secreted
forms were engineered for expression, growth of the cultures was found
to be in the normal range but the expression levels of MTB32A and
MTB32B were low and detectable only by immunoblotting (data not shown).
In addition, the expressed proteins were found to be rapidly cleaved
into several species following induction with IPTG at either 37 or
30°C. In contrast, the mature form of 85B (an established secretory
protein) was rapidly and stably expressed at high levels (~50 mg of
purified protein per liter) with similar conditions (Fig.
3). This suggested that the difficulties encountered with the expression of the putative serine protease antigens may be inherent in their proteolytic properties.

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FIG. 3.
Overexpression of rMTB32 antigens in E. coli.
The figure shows expression and purification of two overlapping
constructs comprising a 20-kDa N-terminal half (residues 1 to 195) (A)
and an overlapping 14-kDa C-terminal fragment (residues 192 to 323) (B)
of the mature secreted MTB32A antigen and the expression and
purification of the mature form of antigen 85B (~30 kDa) (C). The
recombinant antigens were purified by affinity chromatography with an
Ni-NTA agarose matrix. The gels shown are Coomassie blue-stained
SDS-15% polyacrylamide gels containing 10 µg (A and B) or 5 µg
(C) of E. coli lysates from uninduced (lanes 1) and
IPTG-induced (lanes 2) cultures. Lanes 3 show loadings of the purified
protein (5 µg [A and B] and 2.5 µg [C]). Numbers at left of
each panel indicate molecular masses in kilodaltons.
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To circumvent these problems, the secreted forms of the MTB32 antigens
were engineered for expression of E. coli as two overlapping constructs. MTB32A was expressed as an ~20-kDa N-terminal half comprising residues 1 to 195 and an overlapping ~14-kDa C-terminal fragment (132 amino acids; residues 192 to 323). Both constructs were
designed to contain six N-terminal histidine residues for ease of
purification by affinity chromatography over an Ni-NTA matrix (Fig. 3A
and B). The expression levels of both fragments were in the range of 50 to 150 mg (for the N- and C-terminal halves) of purified protein per
liter of induced culture. Similarly, MTB32B was expressed as an
~20-kDa fragment (amino acid residues 1 to 194) and an overlapping
22-kDa C-terminal fragment (225 amino acids; residues 97 to 322) (data
not shown).
The N-terminal halves of the purified recombinant antigens were also
used to raise high-titer rabbit antisera. Immunoblot analysis was
subsequently performed on M. tuberculosis lysate and
M. tuberculosis CFP to determine their secretory nature. In parallel, to have an estimate on the abundance of MTB32A relative to
that of 85B, varying amounts of both recombinant antigens were also run
on the same gel. In the case of MTB32A, the recombinant 20-kDa
N-terminal half was used. The anti-MTB32A antiserum revealed a dominant
species of ~32 kDa in the CFP lane in agreement with the predicted
molecular mass of the mature form of MTB32A (Fig. 4A). Interestingly, for both MTB32A and
85B (Fig. 4B), the sizes of the proteins detected in the lysate were
similar to those found in CFP, suggesting that they are rapidly
processed and exported from the bacilli after synthesis. In addition,
the intensity of the signal in the Western blot of M. tuberculosis CFP probed with anti-rMTB32A indicated that, relative
to 85B, MTB32A is also an abundant protein in CFP. Probing of a similar
blot with anti-MTB32B serum revealed a ~32-kDa dominant species in
the CFP lane which is also in agreement with the predicted size of the
mature and secreted form of this protein. Two higher-molecular-mass
species with sizes of ~35 and 70 kDa were identified in the lysate
lane. To gain an estimate of the relative abundance of MTB32 antigens in CFP, immunoblots containing 2.5 µg of CFP were run alongside 50 ng
each of the recombinant antigens (internal control) and the blots were
probed with their respective antisera. The reactivities of the rabbit
anti-MTB32A and MTB32B sera to the corresponding recombinant antigens
were comparable (Fig. 4A and C, lanes 1). However, the immunoreactivity
of the rabbit anti-MTB32A sera to native MTB32A found in CFP was
significantly more intense than that observed on a duplicate blot
probed with the rabbit anti-MTB32B serum (compare lanes CFP and 1 of
panels A and C). Finally, and despite 66% overall homology between the
two proteins, the reactivities of the polyclonal rabbit antisera were
found to be specific to the respective immunizing proteins (data not
shown).

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FIG. 4.
Immunoblot analysis of MTB32A and MTB32B. The
localization and abundance of MTB32A and MTB32B relative to one another
and to a known secreted M. tuberculosis antigen (antigen
85b) were evaluated by immunoblot analysis of 2.5 µg of M. tuberculosis H37Rv lysate (Lysate) and CFP and 50 ng (lanes 1) of
rMTB32A, recombinant antigen 85B, and rMTB32B (A, B, and C,
respectively). For a quantitative estimate of the abundance of MTB32B
in CFP relative to antigen 85B, serial dilutions of both recombinant
antigens (25, 10, and 2.5 ng [lanes 2 to 4, respectively]) were also
run alongside M. tuberculosis lysate and CFP. The blots were
probed with the corresponding rabbit antisera made against the
recombinant antigens MTB32A (A), antigen 85B (B), and MTB32B (C).
Numbers at left of each panel indicate molecular masses in
kilodaltons.
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Sequence conservation and genomic organization of MTB32A in
mycobacterial species.
Since MTB32A was cloned from the avirulent
H37Ra strain, we wanted to determine its presence in clinical isolates
as well as in environmental isolates other than those of the M. tuberculosis complex. We used as a probe the N-terminal ~600-bp
fragment which spans the single PstI site within the protein
coding region of mtb32a in Southern hybridization of genomic
DNA from several mycobacterial species digested with PstI.
As shown in Fig. 5, mtb32a is
specific to the M. tuberculosis complex. The DNA probe
hybridized to two species with sizes of ~1.0 and 0.62 kb. The
hybridizing fragments were indistinguishable among the strains H37Ra,
H37Rv, Erdman, and BCG and the clinical isolate C. Sequence analysis of
cosmid clone MTCI418B.07 of the H37Rv strain revealed the presence of two flanking PstI sites located ~1.0 and 0.62 kb from the
internal PstI site of mtb32a, thus suggesting
that mtb32a is a single-copy gene. Similarly, a single copy
of the mtb32a gene was also found in the genome database of
the clinical isolate CSU 93. Finally, nucleotide sequence comparison of
mtb32a genes of the avirulent H37Ra and virulent Erdman
strains, as well as with the corresponding sequences (identified in the
databases) of the H37Rv strain and the CSU93 clinical isolate, revealed
100% identity.

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|
FIG. 5.
Southern blot analysis of mtb32a genomic
sequences. One microgram each of genomic DNAs from several strains of
the M. tuberculosis complex (H37Ra, H37Rv, Erdman, and C)
and BCG and from other environmental mycobacterial species (M. scrofulaceum, M. smegmatis, M. fortuitum,
M. malmoense, and M. gordonae) was digested with
PstI and probed with a 600-bp coding fragment of MTB32A.
Numbers at left are the sizes, in kilobase pairs, of
HindIII-HincII-digested DNAs.
|
|
Immune responses of human PBMC to rMTB32 antigens.
The
recombinant antigens were evaluated in vitro for their ability to
induce T-cell proliferation and IFN-
production with a panel of PBMC
obtained from healthy PPD+ (indurations of 10 to 20 mm) and
PPD
individuals of diverse ethnic backgrounds. Both the
N- and C-terminal portions of rMTB32A and rMTB32B were evaluated
alongside r85B and total CFP on a panel of 14 PPD+ and 7 PPD
donors. With a stimulation index (SI) cutoff of >5
as a positive response, 7 of the 14 (50%) PPD+ donors
responded to the N-terminal half of rMTB32A with SI values ranging from
5.3 to 33 (Fig. 6) while only one of the
14 donors proliferated in response to stimulation with the C-terminal
half of rMTB32A (data not shown). Interestingly, and despite 66%
homology between MTB32A and MTB32B, none of the PPD+ donors
evaluated responded to either the N- or the C-terminal half of MTB32B,
suggesting that the T-cell epitopes of PPD+ individuals
recognized by PBMC reside within sequences that are specific to MTB32A.
None of the seven healthy PPD
donors responded to either
rMTB32A or rMTB32B. The viability of all donor PBMC was confirmed by
proliferation and the secretion of IFN-
in response to tetanus
toxoid and phytohemagglutinin (data not shown). In parallel, an aliquot
of the supernatant was removed from the same culture of donor PBMC
prior to pulsing with [3H]thymidine, and the levels of
secreted IFN-
were measured. A direct correlation was observed
between a positive proliferative response and the production of
IFN-
. Thus, donor PBMC that proliferated following stimulation with
rMTB32A secreted IFN-
, while no IFN-
was detected in the culture
supernatant of PBMC (of both PPD+ and PPD
donors) that did not proliferate.

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|
FIG. 6.
Proliferative responses (symbols) of PBMC from
PPD+ (+) and PPD ( ) healthy donors
following stimulation with CFP (10 µg/ml) or rMTB32A and r85B (5 µg/ml). In vitro proliferation was measured by
[3H]thymidine incorporation and is presented as SI: mean
counts per minute of test antigen/mean counts per minute of medium
alone. Identical symbols represent the same donor PBMC evaluated with
multiple antigens.
|
|
 |
DISCUSSION |
This report describes the molecular cloning, characterization, and
immunological evaluation of two secreted serine protease antigens
(MTB32A and MTB32B) found in CFP of M. tuberculosis. The
ORFs of these antigens correspond to "pepA" (Rv0125) and a "probable serine protease" (Rv0983), respectively, as defined in
the sequenced M. tuberculosis H37Rv genome (11).
These two genes were identified on separate loci in the M. tuberculosis genome sequence and are not closely linked; they are
separated by ~1 Mb on the circular genome. MTB32A is rapidly
processed and exported from the bacilli after synthesis; only the
mature, not the precursor, form was detected in whole-cell lysate. In
contrast, antibody made against MTB32B identified two precursor forms
of MTB32B in the whole-cell lysate with molecular masses of 35 and 70 kDa. The 35-kDa species could be accounted for as the precursor molecule to the 32-kDa secreted protein (assuming a translation initiation site as predicted in Fig. 1B). Thus, the 70-kDa band may
represent a dimer of the 35-kDa precursor molecule of MTB32A. Alternatively, it is possible that the 35- and 70-kDa species detected
in the lysate resulted from the presence of antigens that share a
cross-reactive B-cell epitope(s) with MTB32B. Finally, the results of
the Western blots also demonstrated the specificity of the rabbit
antibodies to the immunizing antigen despite 66% homology between
MTB32A and MTB32B.
The presence of MTB32 homologies in only mycobacterial species most
strongly associated with human disease suggests that these genes may
confer virulence properties upon these organisms. Sequence comparison
revealed that MTB32A and MTB32B resemble trypsin-like serine proteases
with the classical trypsin active-site triad (His, Asp, and Ser)
comprising not only serine but also histidine and aspartate residues
(16, 30). There is ample precedent in the literature
associating the surface expression or secretion of serine proteases
with various diseases caused by infectious agents. Bacterial proteases
have the potential to destroy the structural and functional proteins
that constitute the host as well as proteins important in host defense.
For example, the HtrA serine protease of Salmonella
typhimurium has been associated with virulence of this
intracellular pathogen (24). Similarly, Plasmodium
falciparum is thought to use secretory forms of serine proteases
in erythrocyte invasion during the blood-borne stage of malaria
(4, 6). A secreted serine proteinase identified in the
culture supernatant of virulent strains of Dichelobacter nodosus has also been associated with virulent foot-rot disease (26). Perhaps of most significance for a potential role of
M. tuberculosis serine protease as a virulence factor is the
recent demonstration that, in Aspergillus-related lung
disease, a secreted serine proteinase was shown to be capable of
hydrolyzing the major structural barriers of the lung (22).
CFP from M. tuberculosis have been identified as a rich
source of antigens that elicit protective responses in various animal models of tuberculosis (1, 19, 20, 32, 33). In addition, the
active synthesis and secretion of CFP components are apparently responsible for the greater efficacy of vaccination with live attenuated mycobacteria than of that with killed organisms. Similarly, individual components of the secreted proteins of M. tuberculosis including members of the antigen 85 complex (28,
34, 35, 42), the APA (Tb45/47) protein (14, 27), ESAT6
(40), MTB8.4 (12), and MTB12 (43) have
been shown to induce cellular immune responses. In this study, we have
shown that rMTB32A protein is recognized by PBMC of healthy,
disease-free, PPD+ donors, suggesting that this protein may
play a role during the development of protective immune responses
against M. tuberculosis. Interestingly, and despite 66%
homology between MTB32A and MTB32B, none of the PPD+ donors
evaluated responded to MTB32B. Thus, the immunogenic T-cell epitopes of
PPD+ individuals recognized by PBMC reside within sequences
that are specific to MTB32A and are located predominantly within the
amino-terminal half of the molecule. We are currently assessing
MTB32A-specific immune responses in a broader array of donor types
including patients in varying states of disease progression, healthy
household contacts, and BCG recipients.
MTB32A is encoded by a single-copy gene which is present in both
virulent and avirulent strains of the M. tuberculosis
complex and the BCG strain of M. bovis but absent in the
environmental mycobacterial species. In addition, nucleotide sequence
comparison of mtb32a genes of the avirulent H37Ra strain and
the virulent Erdman strain, as well as with the corresponding sequences
(identified in the databases) of H37Rv and the clinical isolate CSU93,
revealed 100% identity. It would be expected that, for an antigen to
be considered for inclusion in the design of a subunit vaccine, it should be highly conserved among clinical isolates.
Thus, given that MTB32A (i) is a relatively abundant protein in culture
supernatant, (ii) is recognized by PBMC from healthy PPD+
donors, and (iii) is conserved among different strains of
Mycobacterium spp., we suggest its inclusion as a candidate
component in the development of a subunit-based vaccine against
M. tuberculosis infection. We are currently assessing the
protective capability of MTB32 vaccination in murine models of
tuberculosis with both recombinant proteins in conjunction with
specific adjuvants and DNA vaccine approaches.
 |
ACKNOWLEDGMENTS |
We thank John Belisle for providing M. tuberculosis
CFP (produced through NIAID/NIH Tuberculosis Research Materials
contract N01-AI-25147), Stephan Johnson and Rhea Coler for providing
some of the genomic DNA used in the Southern blot assay, Pamela
Ovendale for help in performing human PBMC assays, and Shyian Jen for
performing the immunoblotting.
Y.A.W.S. was supported in part by a Centennial Fellowship from the
Medical Research Council of Canada.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Corixa
Corporation, 1124 Columbia St., Seattle, WA 98104. Phone: (206)
754-5772. Fax: (206) 754-5715. E-mail: Skeiky{at}Corixa.Com.
Editor:
S. H. E. Kaufmann
 |
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Infection and Immunity, August 1999, p. 3998-4007, Vol. 67, No. 8
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Copyright © 1999, American Society for Microbiology. All rights reserved.
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