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Infection and Immunity, December 2000, p. 6807-6818, Vol. 68, No. 12
0019-9567/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Identification and Immunogenicity of Group A
Streptococcus Culture Supernatant Proteins
Benfang
Lei,1
Stacy
Mackie,1
Slawomir
Lukomski,2 and
James
M.
Musser1,*
Laboratory of Human Bacterial Pathogenesis,
Rocky Mountain Laboratories, National Institute of Allergy and
Infectious Diseases, National Institutes of Health, Hamilton, Montana
59840,1 and Department of Pathology,
Baylor College of Medicine, Houston, Texas
770302
Received 2 August 2000/Returned for modification 6 September
2000/Accepted 15 September 2000
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ABSTRACT |
Extracellular proteins made by group A Streptococcus
(GAS) play critical roles in the pathogenesis of human infections
caused by this bacterium. Although many extracellular GAS proteins have been identified and characterized, there has been no systematic analysis of culture supernatant proteins. Proteins present in the
culture supernatant of strains of serotype M1 (MGAS 5005) and M3 (MGAS
315) mutants lacking production of the major extracellular cysteine
protease were separated by two-dimensional gel electrophoresis and
identified by amino-terminal amino acid sequencing and interrogation of
available databases, including a serotype M1 genome sequence. In the
aggregate, amino-terminal amino acid sequence data for 66 protein spots
were generated, 53 unique sequences were obtained, and 44 distinct
proteins were identified. Sixteen of the 44 proteins had apparent
secretion signal sequences and 27 proteins did not. Eight of the 16 proteins with apparent secretion signal sequences have not been
previously described for GAS. Antibodies against most of the apparently
secreted proteins were present in sera from mice infected
subcutaneously with MGAS 5005 or MGAS 315. Humans with documented GAS
infections (pharyngitis, acute rheumatic fever, and severe invasive
disease) also had serum antibodies reacting with many of the apparently
secreted proteins, indicating that they were synthesized in the course
of GAS-human interaction. The genes encoding four of the eight
previously undescribed and apparently secreted culture supernatant
proteins were cloned, and the proteins were overexpressed in
Escherichia coli. Western blot analysis with these
recombinant proteins and sera from GAS-infected mice and humans
confirmed the immunogenicity of these proteins. Taken together, the
data provide new information about the molecular aspects of GAS-host interactions.
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INTRODUCTION |
The human bacterial pathogen
group A Streptococcus (GAS) causes a wide variety of
diseases globally (35). GAS is the primary cause of
pharyngitis, an infection that causes substantial morbidity and
economic loss and can lead to acute rheumatic fever and rheumatic heart
disease, the main cause of preventable pediatric heart disease globally. Although largely controlled in the United States and other
western countries, the disease persists in certain regions, for
example, Salt Lake City, Utah (49). GAS can also cause
serious invasive infections such as septicemia, streptococcal toxic
shock syndrome, and necrotizing fasciitis. The fatality rate for
patients with invasive infections has exceeded 50% in some case
series. The organism can cause other postinfection sequelae such as
glomerulonephritis, a disease that is also a major public health
problem in developing countries. There is currently no licensed vaccine
to prevent human GAS infection.
Research conducted over many decades has shown that much of the host
pathology caused by GAS is mediated by extracellular proteins (8,
12, 35). Three general categories of extracellular proteins have
been recognized (12). First, proteins that are actively
secreted into the extracellular environment and are largely or solely
found free in the culture supernatant have been described. These
proteins have secretion signal sequences and are presumed to be
actively exported. Examples of these proteins include potent superantigens such as streptococcal pyrogenic exotoxins A and C. A
second category of GAS extracellular proteins includes molecules with a
secretion signal sequence and a conserved hexapeptide sequence (Leu-Pro-X-Thr-Gly [LPXTG]) located at the carboxy terminus that anchors the protein to the bacterial cell membrane (12).
Some of these proteins or fragments thereof can also be present free in
the culture supernatant, especially in the stationary phase of growth.
These cell surface-anchored proteins include known virulence factors
such as M protein and C5a peptidase. In recent years, evidence has been
presented that a third category of GAS extracellular proteins exists
(37-39, 44, 51). These proteins lack apparent secretion
signal sequences and the LPXTG membrane anchor motif. Although their
presence in culture supernatants may be related in part to passive
release from the intracellular compartment due to cell wall autolysis,
the observation that some of these proteins are found in relatively
high concentrations in the logarithmic phase of growth suggests that an
unknown transport mechanism participates. Interestingly, two proteins
that are assigned to this class (glyceraldehyde-3-phosphate
dehydrogenase and
-enolase) are enzymes involved in the glycolytic
pathway of metabolism (37-39, 51).
Despite the reasonably detailed understanding of GAS extracellular
proteins, there has been no systematic analysis of culture supernatant
proteins with contemporary investigative methods. Importantly, this
general line of investigation has provided critical new information
about extracellular proteins made by diverse pathogens, such as
Mycobacterium tuberculosis, Haemophilus
influenzae, Listeria monocytogenes, and
Helicobacter pylori (5, 6, 19-21, 25, 41,
54). For example, new vaccine candidates and drug and diagnostic
targets have been identified.
The goal of the present study was to identify and characterize proteins
found in relative abundance in culture supernatants of GAS strains
grown in vitro. A comprehensive understanding of GAS pathogenesis
requires molecular dissection of the pathogen proteome, especially
proteins found in culture supernatants. As a first step toward this
end, we analyzed culture supernatant proteins made by strains of
serotype M1 and M3 GAS by two-dimensional electrophoresis and
amino-terminal amino acid sequencing. Isolates expressing these M
proteins are the two more abundant types causing human invasive
infections such as septicemia and necrotizing fasciitis (33). To identify supernatant proteins expressed in the
course of host-pathogen interactions, we used two-dimensional Western blot analyses with sera obtained from mice with experimentally induced
soft tissue infection and from humans with pharyngitis, acute rheumatic
fever, and severe invasive disease. The genes encoding four of eight
apparently secreted and previously undescribed culture supernatant
proteins were cloned, and recombinant proteins were overexpressed in
Escherichia coli. Western blot analysis with these
recombinant proteins and sera from GAS-infected mice and humans
confirmed the immunogenicity of the four proteins.
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MATERIALS AND METHODS |
Bacterial strains and routine growth.
Strains MGAS 5005 (serotype M1) and MGAS 315 (serotype M3) have been described previously
and characterized extensively (16, 17, 28-30, 33). Briefly,
MGAS 5005 contains the gene (speA) encoding streptococcal
pyrogenic exotoxin A, expresses the most common variant of M1 and
streptococcal inhibitor of complement (1, 17), and is
representative of the most abundant serotype M1 strains recovered from
humans with invasive disease globally. Similarly, MGAS 315 has the
speA gene and all genetic features typical of serotype M3
strains commonly cultured from patients with invasive disease.
E. coli XL-1 Blue (Stratagene, La Jolla, Calif.) or E. coli NovaBlue and BL21(DE3) (Novagen, Madison, Wis.) were used for gene cloning and protein expression. GAS strains were grown routinely in Todd-Hewitt broth (Difco Laboratories, Detroit, Mich.) supplemented with 0.2% yeast extract (THY). Brain heart infusion (BHI) agar (Difco
Laboratories) or tryptose agar with 5% sheep blood (Becton Dickinson,
Cockeysville, Md.) was used as a solid medium. For mutant selection,
BHI agar supplemented with spectinomycin (150 µg/ml) was used. The
GAS strains were grown at 37°C in a 5% CO2-20% O2 atmosphere.
Construction of speB-inactivated isogenic mutant
strains.
A promoterless nonpolar spectinomycin resistance gene
(aad gene) cassette was initially used to construct the
speB-negative isogenic mutant (26, 28). However,
the desired mutants of MGAS 5005 and MGAS 315 could not be obtained,
presumably due to the failure of the mutant to survive antibiotic
selection. The speB gene is expressed in the stationary
phase of growth, well after antibiotic selective pressure has been
supplied. Hence, when the speB gene is regulated by its
native promoter, it is unlikely that transcription of the gene and the
contiguous antibiotic resistance-conferring gene are expressed early
during selection. To overcome this problem, a new nonpolar cassette
with the spectinomycin resistance gene linked to a constitutive
promoter was constructed. The aad gene and its promoter
(26) were amplified using plasmid pEU904 (obtained from
J. R. Scott, Emory University) DNA as the template and primers
5'-GGACCCGGGAATACATGTTATAATAACTATAAC-3' and 5'-CCTCCCGGGCATGTGATTTTCCTCCTTTTTATAATTTTTTTAATCTGTTA-3'.
The PCR product was digested with SmaI and inserted
into pLEX5B (10) to generate recombinant plasmid
pSL81. Plasmid pSEB1719 harboring the speB gene
(36) was digested with StyI and blunt ended with Klenow fragment DNA polymerase I. The aad-containing
SmaI fragment of pSL81 was inserted between the
StyI sites to replace the majority of the speB
gene. The suicide plasmid obtained (pSL82) was introduced into MGAS
5005 and MGAS 315 by electroporation. The recombinants were selected on
medium with 150 µg of spectinomycin per ml. Presumed mutants were
identified and confirmed by PCR, Southern blotting, and DNA sequencing.
The speB mutants lacked proteolytic activity, as assessed by
the casein plate assay (36).
Isolation of culture supernatant proteins.
The
speB mutants of MGAS 315 and MGAS 5005 were cultured in THY
lacking proteins with a molecular mass greater than 10 kDa (protein-reduced THY [PR-THY]). To prepare PR-THY, THY was passed through a 0.22-µm-pore-size filter and the resulting material was
filtered with a membrane cartridge with a 10-kDa molecular mass cutoff
(S3Y10; Millipore Corporation, Bedford, Mass.) installed in a ProFlux
M12 tangential-flow filtration system (Millipore Corporation). Proteins
with a molecular mass greater than 10 kDa were retained by the
cartridge and discarded. To isolate proteins produced in the
exponential phase, MGAS 315 speB or MGAS 5005 speB was grown overnight on BHI agar and inoculated into 400 ml of PR-THY. The organisms were grown to exponential phase (optical density at 600 nm [OD600] of ~0.4) in 5%
CO2 at 37°C. Forty milliliters of the culture was added
to 900 ml of PR-THY in each of eight 1-liter bottles. The bottles were
incubated in 5% CO2 at 37°C and harvested at an
OD600 of 0.4 to 0.5. To isolate proteins produced in the
stationary phase, 1 ml of exponential-phase (OD600 ~0.4) GAS was inoculated into 900 ml of PR-THY in each of eight 1-liter bottles. The bacteria were grown in 5% CO2 at 37°C for
16 to 18 h and pelleted by centrifugation at 12,000 × g for 10 min. For all growth conditions, the supernatant was
concentrated to 350 ml by passage through a 0.22-µm-pore-size filter
and the Millipore filtration system equipped with cartridge S3Y10.
Proteins in the concentrated supernatant were precipitated by addition
of (NH4)2SO4 to 90% saturation and
recovered by centrifugation at 18,000 × g for 20 min.
The pellet was dissolved in a small amount of water. The proteins were
dialyzed against 3 liters of water in Slide-A-Lyzer dialysis cassettes
with a 10-kDa molecular mass cutoff (Pierce, Rockford, Ill.) at 4°C
for 20 h with one change of water. The sample was stored at
20°C in 1.5-ml aliquots.
Two-dimensional electrophoresis.
The first-dimension
isoelectric focusing was performed with the IPGphor IEF system and
Immobiline DryStrip gel strips (7 cm) with a linear immobilized pH
gradient of 3 to 10 (Amersham Pharmacia Biotech, Inc., Piscataway,
N.J.). The sample was prepared by adding a saturating amount of solid
urea to the starting protein solution and mixing this solution with an
equal volume of rehydration stock solution {8 M urea, 4%
3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate [CHAPS],
4% IPG buffer, 50 mM dithiothreitol}. The sample (130 µl), gel
strip, and mineral oil were sequentially added to a 7-cm strip holder.
The holder was loaded into the IPGphor IEF system. The strip was
rehydrated with the sample solution for 11 h, and the proteins
were focused in three steps consisting of 500 V for 1 h, 1,000 V
for 2 h, and 8,000 V for 7 h at 20°C.
The second dimension (sodium dodecyl sulfate-polyacrylamide gel
electrophoresis [SDS-PAGE]) was carried out with a Tris-HCl Ready Gel
(Bio-Rad Laboratories, Hercules, Calif.). After isoelectric focusing,
the gel strip was rocked gently in SDS equilibration buffer (50 mM
Tris-Cl [pH 8.8], 6 M urea, 30% glycerol, 2% SDS, 10 mM
mercaptoethanol, bromophenol blue) for 15 min. SDS-PAGE was conducted
at 150 V for 1 h, and the gel was stained with GelCode Blue Stain
Reagent (Pierce). Alternatively, the proteins were transferred to a
membrane for amino-terminal amino acid sequencing or Western blotting.
Amino-terminal amino acid sequencing.
Proteins separated by
two-dimensional electrophoresis were transferred to a polyvinylidene
difluoride membrane (Bio-Rad Laboratories) with Towbin transfer buffer
using a Trans-Blot SD semidry transfer cell (Bio-Rad Laboratories) at
15 V for 40 min. The membrane was washed three times with water,
stained with 0.1% Coomassie blue in 40% methanol and 1% acetic acid,
and destained with 50% methanol aqueous solution. Amino-terminal amino
acid sequences of the stained spots in the polyvinylidene difluoride
membrane were determined by Edman degradation with an ABI/Perkin-Elmer
494 cLC protein sequencer.
Mouse sera.
Mouse sera were obtained from adult (18- to
20-g) male outbred CD-1 Swiss mice (strain ICR; Harlan-Sprague-Dawley
Inc., Houston, Tex.) inoculated subcutaneously with wild-type MGAS 5005 (serotype M1) and MGAS 315 (serotype M3). The animals were anesthetized by Metofane (Mallinckrodt Veterinary, Mundelein, Ill.) inhalation before all experimental procedures. Control sera were obtained prior to
mouse inoculation. Inocula were prepared from GAS cultures grown to
mid-logarithmic phase (OD600 of ~0.5). The bacterial cells were harvested and washed once with sterile ice-cold and pyrogen-free phosphate-buffered saline (PBS). The cells were
resuspended in an appropriate volume of PBS to give the required
inoculum, which was verified by colony counts with tryptose agar plates containing 5% sheep blood.
Groups of ~115 mice were injected subcutaneously in the right flank
with wild-type MGAS 5005 (2.3 × 107 CFU) or MGAS 315 (1.7 × 107 CFU). Preliminary experiments found that
about 70 to 80% of mice survive and develop prominent gross cutaneous
lesions with these inocula. Cutaneous lesions caused by these inocula
healed over time in the surviving mice. The animals were sacrificed 20 to 28 days after inoculation. Serum was obtained by cardiac puncture and stored at
20°C. Sera obtained from cohorts of animals
inoculated with each strain were pooled and used for Western blot analyses.
Human sera.
Inasmuch as GAS causes several very different
types of infections, sera obtained from humans with three distinct
diseases were used for Western blot analysis. Convalescent-phase serum was obtained from a child with uncomplicated GAS pharyngitis. The
convalescent-phase serum was drawn 18 days after the pharyngitis diagnosis. The M protein type of the infecting strain was not known,
and the organism was not available for analysis. Paired acute- and
convalescent-phase sera obtained from a patient with an invasive GAS
infection were also studied. The convalescent-phase serum was drawn 48 days after the invasive-disease diagnosis. The M type of the infecting
strain (serotype M1) was inferred by sequence analysis of the region of
the emm gene encoding the hypervariable amino terminus of
this protein. We also used serum drawn from a patient in the acute
phase of an initial rheumatic fever episode. The M protein type of the
infecting strain was not known, and the organism was not available for
analysis. However, serologic analysis indicated infection in an M1 organism.
Western blot analysis.
Proteins separated by two-dimensional
electrophoresis or SDS-PAGE were transferred to nitrocellulose
membranes (Immobilon-NC; Millipore Corporation) with Towbin transfer
buffer using a Trans-Blot SD semidry transfer cell (Bio-Rad
Laboratories) at 15 V for 40 min. The membrane was treated with 10 ml
of block solution (1:2,000 Amersham Liquid Block in 150 mM NaCl and 100 mM Tris-HCl, pH 7.4) for 1 h and incubated for 1 h with
primary antibodies added to the block solution. The membrane was then
rinsed twice and washed three times for 15 min each with 0.1% Tween 20 in PBS. The membrane was incubated with goat anti-mouse or anti-human
immunoglobulin G (heavy plus light chains) horseradish
peroxidase-conjugated secondary antibodies (Sigma, St. Louis, Mo.) for
1 h and rinsed and washed as described above. Antigen-antibody
reactivity was visualized by enhanced chemiluminescence.
Cloning and expression of the genes encoding SP13, SP22, SP24,
and SP35.
The primers, vectors, and restriction enzymes used for
PCR amplification and cloning of the sp13, sp22,
and sp35 genes and two sp24 gene fragments are
listed in Table 1. The primers were designed on the basis of gene sequences present in an available M1 GAS
genome sequence (Streptococcus pyogenes Genome Sequencing Project, University of Oklahoma [http://genome.ou.edu/strep.html]). and some of the nucleotides were altered to create restriction enzyme
sites for cloning. PCR products obtained with MGAS 5005 DNA were
digested with the appropriate restriction enzymes and cloned into
pET-21b or pET-21d to obtain recombinant plasmids (Table 1). The
resulting cloned genes and gene fragments were sequenced to rule out
introduction of spurious mutations.
To assess expression of the cloned genes or gene fragments, recombinant
E. coli BL21 was grown at 37°C for 10 h in 3 ml
of Luria-Bertani broth supplemented with 100 mg of ampicillin per liter. The OD600 of the cultures was measured. Cells were
pelleted by centrifugation and resuspended in 1× SDS-PAGE loading
buffer at a ratio of 100 µl of buffer per 1 OD600 unit
per ml. The samples were boiled for 3 min before being loaded for
protein separation with SDS-PAGE.
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RESULTS |
Two-dimensional electrophoresis profiles of culture supernatant
proteins.
We chose to focus this analysis on serotype M1 and M3
GAS strains, 2 of greater than 100 distinct M types that have been
described. Because genetic heterogeneity exists among strains
expressing these serotypes (16, 17, 33, 34), we selected
strains that have been extensively characterized genetically and
phenotypically and are known to represent the abundantly occurring M1
and M3 subclones of each serotype infecting humans globally. These
strains also are readily genetically manipulated and are virulent for mice. The major drawback of use of the chosen strains is that the
genome sequences are not yet available for these organisms. Isogenic
derivatives in which the gene encoding the major extracellular protease
had been insertionally inactivated were used for three main reasons.
First, we thought that use of the speB mutants would enhance
the probability of successful identification of stationary-phase proteins, since degradation of culture supernatant proteins would be
greatly reduced. Second, we thought that use of the speB
mutants would enhance identification of immunogenic proteins, also due to decreased target protein degradation. Third, decreased proteolysis of culture supernatant proteins would also result in the need to
identify fewer protein spots and would be more efficient.
Two-dimensional electrophoresis of the culture supernatant proteins
from the speB mutants of serotype M1 MGAS 5005 and
serotype M3 MGAS 315 grown to exponential and stationary phases
identified about 50 abundant spots in each sample (Fig.
1). (For purposes of description and
uniformity, we will refer to these spots as protein spots throughout
this paper.) The supernatant protein profiles were similar for
the two strains in each growth phase, but some differences were
detected. For example, protein spots a, 15, 25, and 27 in Fig. 1C
(MGAS 315 speB) are absent in Fig. 1D (MGAS 5005 speB), and conversely, protein spots 31, 34, 36, and 41 in
Fig. 1D are absent in Fig. 1C. In addition, certain protein spots were
present uniquely or predominantly in culture supernatant proteins
in a growth phase-dependent fashion. For example, protein spots 17, 27, and 34 were preferentially present at stationary phase (Fig. 1).
Numerous protein spots had neighboring protein spots with very similar
apparent molecular weights but distinct pIs.

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FIG. 1.
Two-dimensional electrophoresis profiles of GAS culture
supernatant proteins. Supernatant proteins (340 µg) were subject to
isoelectrofocusing in a pH range of 3 to 10 and then resolved by
SDS-PAGE with a 15% (A and B) or 12% (C and D) gel. The proteins were
stained with GelCode Blue Stain Reagent (Pierce). The numbered and
lettered triangles indicate the protein spots whose amino-terminal
amino acid sequences were determined by Edman degradation. (A and B)
Proteins obtained from culture supernatants of speB mutants
of MGAS 315 (serotype M3) (A) and MGAS 5005 (serotype M1) (B) grown to
exponential phase. (C and D) Proteins obtained from stationary-phase
culture supernatants of speB mutants of MGAS 315 (C) and
MGAS 5005 (D).
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Protein spot identification.
The amino-terminal 10 or 12 amino
acid residues for a total of 66 protein spots were determined by Edman
degradation, and the data were used to interrogate available databases,
including a GAS M1 genome sequence (http://genome.ou.edu/strep.html).
Fifty-two of the 53 unique amino-terminal sequences obtained were
unambiguous, and one had ambiguous identification of the first three
residues (Table 2). Forty-six of the 53 amino-terminal amino acid sequences were 100% identical to the
inferred sequence of an open reading frame (ORF) present in the
available M1 genome sequence. Four of the 53 amino-terminal sequences
had one or two mismatched amino acid residues and had a cognate ORF in
the genome. It is unknown if the amino acid mismatches were due to
naturally occurring polymorphisms or nucleotide sequencing errors. The
genes encoding 47 protein spots were identified from an available GAS
M1 genome sequence. The emm3 and speA genes,
encoding protein spots 15 and 28, respectively, were obtained by
analysis of the GenBank database. The identities of three MGAS 315 protein spots and one MGAS 5005 protein spot could not be discerned
from available database information.
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TABLE 2.
Proteins identified in the culture supernatants of the
speB mutants of GAS serotype M1 MGAS 5005 and serotype
M3 MGAS 315
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Several distinct protein spots had amino-terminal amino acid sequences
indicating that they were related proteins. For example, two protein
spots (spots 38 and 39 [Fig. 1]) identified as mitogenic factor
apparently arose by alternative proteolytic cleavage of the signal
peptide. Protein spots 31, 34, and 40 had amino-terminal amino acid
sequences corresponding to sequences beginning at amino acid residues
42, 66, and 217, respectively, of M1 protein. Protein spot 31 was the
expected mature M1 protein whereas protein spots 34 and 40 apparently
arose due to internal proteolysis by an enzyme other than the SpeB
cysteine protease. Protein spots 16 and 33 each had the identical
amino-terminal amino acid sequence appropriate for
NAD+-glycohydrolase (3, 14, 24) (referred to as
NADase in this report) but had different pIs (Fig. 1). The apparent
molecular weight of protein spot 33 was slightly less than that of
protein spot 16, and the spot may have arisen as a consequence of
proteolytic cleavage toward the carboxy terminus of the protein.
In the aggregate, 66 protein spots were analyzed, 53 unique
amino-terminal amino acid sequences were obtained, and 44 unique
proteins were identified (Table 2).
Proteins with apparent secretion signal sequences.
The
amino-terminal sequences of 17 proteins did not start with the first
or second inferred amino acid residue of the ORF and
apparently were products of a proteolytic process. The inferred amino-terminal amino acids of 16 of the 17 proteins have
characteristics typical of secretion signal sequences, including
charged residues followed by a stretch of hydrophobic residues and
cleavage after an alanine residue (Fig.
2). Ribosomal protein L7/L12 (protein spot 7) was excluded from further consideration because it lacks an
apparent secretion signal sequence. Eight of these 16 extracellular proteins have been previously identified in GAS and
characterized, including NADase, streptolysin O, M1 and M3
proteins, mitogenic factor, streptococcal pyrogenic exotoxin A,
streptococcal inhibitor of complement, and streptokinase (8, 9,
23) (Table 3). Eight new proteins
were identified, including homologues of class B acid phosphatase (spot
IX [not shown in Fig. 1), serine protease (spot 24), and
cyclomaltodextrin glucanotransferase (spot 30). Protein spots 13 and 35 are homologues of two proteins with unknown functions, i.e., GAS
immunogenic secreted protein (31) and a putative secreted
protein made by Streptococcus mutans (GenBank accession no.
U78607), respectively. Protein spot 22 lacks a known bacterial
homologue but has regions of identity with a human protein known as
Mac-1 (2, 7, 53). Protein spot 23 is homologous to several
peptidoglycan hydrolases (43). Protein spot 27 has no
homologue in available protein databases and is of unknown function.

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FIG. 2.
Putative secretion signal sequences. The first amino
acids of the mature proteins (rightmost residue) are the residues after
the italicized alanine residue. The arrow indicates the processing
cleavage site. The amino acid sequences of the cleaved peptides for 13 of the 16 proteins were derived from the cognate ORFs in an available
M1 genome sequence. The amino acid sequences of SP15, SP26, and SP36
were inferred from the nucleotide sequences deposited in GenBank under
accession numbers X80186, U40453, and AF232306. The single-letter amino
acid abbreviations are used.
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Proteins that lack apparent secretion signal
sequences.
Twenty-seven of the 43 identified proteins
had no apparent secretion signal sequence. Among them, 2 proteins
started with the first inferred amino acid residue (methionine), 24 proteins started with the second inferred amino acid residue, and, as
noted above, one protein (ribosomal protein L7/L12) started with
inferred amino acid 45. Consistent with the lack of a secretion
signal sequence, these proteins are presumed to be intracellular
proteins, including eight glycolytic pathway metabolic enzymes, three
chaperonins, three proteins involved in translation, two sugar
transport proteins, three urea cycle proteins, three ribosomal
proteins, one DNA binding protein, and five other enzymes (Table
4). The other protein, referred to as
antitumor glycoprotein or arginine deiminase (spot 3), may be an
extracellular protein that lacks a secretion signal sequence (8,
9, 23).
Two-dimensional Western blotting of stationary-phase culture
supernatant proteins with sera from infected mice.
Culture
supernatant proteins obtained from the speB mutants of MGAS
315 and MGAS 5005 grown to stationary phase were analyzed by
two-dimensional Western blotting with convalescent-phase sera obtained
from mice with experimental soft tissue infections caused by the
wild-type parental organisms of each of these two strains. Stationary-phase cultures were used because all abundant proteins present in exponential-phase culture supernatants were present in
stationary-phase preparations, but the converse was not true. The
analysis was conducted with both the homologous and heterologous protein-serum pairs, and representative Western blots are shown in Fig.
3. Nineteen protein spots (SP8, SP12,
SP13, SP14, SP15, SP16, SP22, SP24, SP26, SP30, SP31, SP33, SP34, SP35,
SP36, SP38, SP39, SP40, and SP41) that were reactive in the Western
blots matched proteins identified in Fig. 1. These 19 protein spots represent 15 distinct proteins (Table 5).
SP8 (GroEL) and SP12 (phosphoglycerate kinase) are generally considered
to be cytosolic proteins in bacteria. The other 13 proteins have
apparent secretion signal sequences (Fig. 2) and are presumed to be
proteins that are actively secreted. The identity of protein spot VIII
could not be determined because it lacked homology with known
proteins inferred from the available M1 genome sequence. Amino-terminal sequencing of protein spots b, c, d, and f repeatedly failed, and hence
these protein spots could not be identified.

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FIG. 3.
Two-dimensional Western blot analysis of
stationary-phase GAS culture supernatant proteins with
convalescent-phase sera obtained from mice with soft-tissue infection.
Concentrated culture supernatant proteins (60 µg) were separated in
the first dimension by isoelectric focusing (pH 3 to 10) and in the
second dimension by SDS-PAGE with 12% (A and B) or 10% (C and D)
gels. Concentrated culture supernatants from speB mutants of
serotype M3 MGAS 315 (A and B) and serotype M1 MGAS 5005 (C and D) were
used in the analysis. The separated proteins were transferred to
nitrocellulose membranes, and Western blotting was performed with
convalescent-phase sera obtained from mice infected with MGAS 315 (diluted 1:500) (A and C) and MGAS 5005 (diluted 1:1,000) (B and D).
The numbered and lettered triangles indicate the proteins reactive in
the Western blots that correspond to the protein spots (numbered
identically) in Fig. 1.
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Although most of the protein spots identified in the analysis were
present in both M1 and M3 strains, several proteins were uniquely found
in the culture supernatants of one of the organisms. For example,
protein spots 31, 34, 40, and VIII were identified only in the
supernatant of the serotype M1 MGAS 5005 strain, whereas protein spots
15 and 25 were restricted to the supernatant of the serotype M3 MGAS
315 strain. Several of these protein spots correspond to M1 or M3 protein.
Two-dimensional Western blot analysis of culture supernatant
proteins with human sera.
Western blot analysis was also performed
for stationary-phase culture supernatant proteins of the
speB mutant of serotype M1 MGAS 5005 with sera from humans
with various types of GAS infection. Protein-antibody reactivity was
observed with serum obtained from a pharyngitis patient, serum from a
patient with acute rheumatic fever, and convalescent-phase sera from a
human with streptococcal toxic shock syndrome caused by an M1 GAS
strain. Representative immunologic data are shown in Fig.
4.

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FIG. 4.
Two-dimensional Western blot analysis of
stationary-phase GAS culture supernatant proteins with human and mouse
sera. Concentrated culture supernatant proteins (60 µg) obtained from
the speB mutant of MGAS 5005 (serotype M1) were separated in
the first dimension by isoelectric focusing (pH 3 to 10) and in the
second dimension by SDS-PAGE with 10% gels. (A) Convalescent-phase
serum (diluted 1:20,000) obtained from a human with GAS pharyngitis;
(B) serum obtained from a patient with acute rheumatic fever; (C)
convalescent-phase serum (diluted 1:20,000) obtained from a human with
streptococcal toxic shock syndrome caused by an M1 GAS strain. Control
sera obtained from these patients were essentially unreactive when used
at the same dilutions. The numbered and lettered triangles indicate the
proteins reactive in the Western blots that correspond to the protein
spots (numbered identically) in Fig. 1.
|
|
In the aggregate, the sera used had reactive antibodies against the
following protein spots: SP8, SP13, SP14, SP16, SP33, SP35, SP38, a, c,
d, and e. Protein spot h is absent in Fig. 4C. Protein spots 31, 34, 40, and m were present in Fig. 4B and C but absent in Fig. 4A. The
occurrence of reactivity with three protein spots representing M1
protein suggests that the patients with toxic shock syndrome and acute
rheumatic fever were infected by serotype M1 GAS strains, whereas the
pharyngitis patient was infected with a GAS strain other than serotype
M1. Antibody reactivity to SP18 was unique to the serum from the acute
rheumatic fever patient (Fig. 4B). Convalescent-phase serum from the
STSS patient had reactivity with protein spots i and j (Fig. 4C).
Western blot analysis of recombinant GAS proteins.
The
antigenicities of SP13 (immunogenic secreted protein homologue), SP22
(Mac-1-like protein), SP24 (serine protease homologue), and SP35
(homologue of a Lactococcus lactis secreted protein) were
verified by Western blot analysis with recombinant proteins expressed
in E. coli (Fig. 5A). The
Western blotting was conducted with pooled mouse sera obtained from
animals infected subcutaneously with MGAS 5005 (serotype M1) and human
sera taken from patients with pharyngitis, acute rheumatic fever, or
streptococcal toxic shock syndrome. The Western blot analysis confirmed
that antibodies against these proteins were present in infected hosts
(Fig. 5). For example, the mouse and human sera were reactive with the
two fragments of SP24 (Fig. 5). Similarly, the three human sera reacted with recombinant SP13, SP22, and SP35 (Fig. 5). Control mouse and human
sera lacked reactivity with the four recombinant proteins.

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FIG. 5.
Western blot analysis of recombinant GAS proteins. SP13,
SP22, SP35, and two fragments of SP24 were used in the analysis. (A)
SDS-PAGE of lysates of E. coli BL21 expressing the
recombinant proteins. Lane 1, molecular mass markers; lane 2, empty
vector; lanes 3 to 7, E. coli lysates containing recombinant
proteins as indicated. (B) Western blots showing reactivity of sera
with the two recombinant fragments of SP24. Sera (diluted 1:2,000) were
obtained from humans with pharyngitis, acute rheumatic fever (ARF), and
streptococcal toxic shock syndrome (STSS) and from mice infected
subcutaneously with MGAS 5005. Lanes 1, SP24 fragment 1 (amino acid
residues 57 to 282); lanes 2, SP24 fragment 2 (amino acid residues 1029 to 1366); lanes 3, vector control. (C) Western blots showing reactivity
of sera with recombinant SP22 and SP35. Sera (diluted 1:10,000) were
obtained from humans with pharyngitis, acute rheumatic fever, and
streptococcal toxic shock syndrome and from mice prior to infection
with MGAS 5005. Lanes 1, SP13; lanes 2, SP22; lanes 3, SP35; lanes 4, vector control.
|
|
 |
DISCUSSION |
In this study we conducted an initial analysis of proteins found
in relative abundance in the culture supernatants of two GAS strains
grown in vitro at 37°C. The study focused on speA-positive strains of serotypes M1 and M3 which are common causes of human invasive infections globally (33-35). We used isogenic
speB mutants to assist the identification of proteins
expressed in the stationary phase, a time when SpeB production is
greatly upregulated in many strains, resulting in degradation of many
GAS proteins. In the aggregate, amino-terminal amino acid sequence data
were generated for 66 protein spots and 43 distinct proteins were
identified. Eight of the 16 proteins with apparent signal sequences
involved in active secretion have not been previously described for GAS (Table 3). These eight proteins include homologues of peptidoglycan hydrolase (SP23) (18), class B phosphatase (SPIX) (42,
47), serine protease (SP24) (50), cyclodextrin
glucosyltransferase (SP30) (4), a putative secreted protein
made in abundance by L. lactis (SP35) (48), an
immunogenic secreted protein made by GAS (SP13) (31), a
protein with regions of homology with human Mac-1 (SP22) (2, 7,
53), and a protein with no known homologue (SP27).
Previously uncharacterized and apparently secreted GAS
proteins.
Five of these eight previously uncharacterized GAS
proteins that are apparently secreted have homologues with known
functions, whereas three proteins do not. SPIX is 38% identical in
amino acid sequence with Morganella morganii class B acid
phosphatase, and the two proteins have similar molecular
masses (46). In addition, the GAS protein contains the
sequence F-D-I-D-D-T-L-L-F-T-S-Q, which is very similar to a conserved
structural motif, F-D-I-D-D-T-V-L-F-S-S-P, present in class B
phosphatases. A second structural motif
(Y-G-D-[AS]-D-[DNA]-D-[IV]) that is conserved in class B acid
phosphatases also is present in SpIX (Y-G-D-S-D-E-D-I) (42,
47). Class B acid phosphatases are secreted enzymes that
hydrolyze organic phosphate monoesters and also transfer the
orthophosphoryl group from organic phosphoric acid esters to
nucleosides and other compounds with free hydroxyl groups. The
exact physiologic role of these enzymes has not been clarified, and it
is not known if they participate in host-pathogen interactions.
SP23 has 46% amino acid sequence identity with Streptococcus
thermophilus peptidoglycan hydrolase (18). Both of
these streptococcal proteins lack the domain located in the carboxy
terminus of the L. lactis major autolysin that is involved
in cell wall binding.
SP30 has 30 to 50% amino acid identity and a very similar inferred
molecular mass to bacterial cyclodextrin glycosyltransferases (4). These enzymes are secreted proteins and catalyze the
degradation of starch into cyclodextrins that are further metabolized
by the bacterium.
The inferred amino acid sequence of the protein corresponding to SP24
is homologous to those of several serine proteases. The best sequence
matches were identified with serine proteases that cleave and
inactivate human complement protein C5 and are made by GAS and the
related pathogen group B Streptococcus (8, 15,
27). The amino acid sequences of SP24 and C5a peptidase inferred
from the available M1 genome sequence are 31.4% identical in a region
containing 936 amino acid residues. SP24 is also homologous to a
L. lactis serine protease located on the cell surface. The L. lactis SK11 protease (50) and SP24 precursors
have 1,962 and 1,647 amino acid residues, respectively, and the mature
forms have 1,775 and 1,613 amino acid residues, respectively.
Importantly, SP24 has regions of homology with several
serine proteases in areas containing the catalytic triad amino acid residues (aspartic acid, histidine, and serine) (Fig.
6). SP24 also has an inferred LPXTG motif
located at the carboxy terminus that is characteristic of gram-positive
cell surface-anchored proteins (12). Interestingly, SP24 was
detected as a protein spot with an apparent molecular mass of 31 kDa,
indicating that the full-length protein undergoes posttranslational
cleavage. The SP24 protein fragment begins after the apparent secretion signal peptide and is composed of 280 amino acid residues that contain
the aspartic acid and histidine residues of the catalytic triad, but
not the serine residue. These results suggest that, unlike the L. lactis SK11 protease (50), the streptococcal serine protease homologue does not have a conventional propeptide region. It
is unknown whether the 31-kDa SP24 was generated by nonspecific proteolysis or by a targeted and orchestrated GAS cleavage process that
has biologic significance.

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FIG. 6.
Homologous regions of several bacterial serine proteases
and an inferred streptococcal serine protease. Shown are regions
containing the catalytic triad amino acid residues (arrows) aspartic
acid (A), serine (B), and histidine (C). The shaded amino acid residues
match the consensus sequence. The numbers at the left and right sides
of each sequence indicate amino acid positions. SP, serotype M1 MGAS
5005 serine protease homologue; LP, L. lactis SK11 serine
protease (GenBank accession number J04962); SC, subtilisin Carlsberg
(GenBank accession number X03341); PK, proteinase K (GenBank accession
number X14689).
|
|
SP13 is homologous to a GAS immunogenic secreted protein of unknown
function termed Isp and described by McIver et al. (31). The
amino acid sequences of SP13 and Isp are 49% identical. The SP13 Isp
homologue also has 43.7% amino acid sequence identity in a
113-amino-acid region with the TraG putative transfer protein encoded
by a gene in staphylococcal conjugative multiresistance plasmid pSK41.
SP35 has 32.8% identity in a region of 340 amino acid residues
with Usp 45, a major secreted 45-kDa protein of L. lactis with unknown function (48). Schubert et al.
(43) recently reported that a homologous
extracellular protein made by L. monocytogenes has
peptidoglycan lytic activity.
SP22 does not have a known bacterial homologue, but it does have two
features that might provide clues regarding its interaction with the
host. The SP22 protein has 23% amino acid identity in a 203-residue
region with the alpha subunit of human leukocyte adhesion receptor
Mac-1 (1, 7, 53). Mac-1 is a complement receptor and
participates in inflammation. Monoclonal antibodies directed against
the Mac-1 alpha subunit inhibit neutrophil aggregation and adhesion to
endothelial cells. A second feature that may provide insight regarding
function is that SP22 has an arginine-glycine-aspartic acid tripeptide
(RGD) which can mediate the interaction of RGD-containing proteins with
human integrins (22, 45). On the basis of these structural
clues, we speculate that SP22 interferes with the normal host function
of Mac-1. Studies to address the role of the SP22 protein in several
aspects of host-pathogen interactions are under way.
SP27 has no known prokaryotic or eukaryotic homologue and, hence, is of
unknown function.
Proteins generally considered to be located in the cytosol.
More than one-half of the culture supernatant proteins that we
identified do not have apparent secretion signal sequences and are
traditionally considered to be cytosolic proteins involved in
intracellular processes. However, several of these proteins have been
previously reported to be located extracellularly in streptococci, including histone-like protein (44),
glyceraldehyde-3-phosphate dehydrogenase (37, 38, 51,
52),
-enolase (39), arginine deiminase (antitumor
glycoprotein) (9, 23), and phosphocarrier protein
(11). Glycolytic enzymes also have been detected in association with the cell surfaces of several other microbial pathogens
(13, 32). We note that our analysis identified a total of
eight glycolytic enzymes in the culture supernatants of the GAS strains
studied. It is not clear if the proteins we identified that are
generally considered to be cytosolic proteins are actively secreted by
an unknown mechanism or passively released from cells undergoing
autolysis. However, several of the proteins were present in abundance
in the supernatants of mid-log-phase cultures, suggesting that the
extracellular location of these proteins may not be solely due to
passive release. Regardless of the mechanism responsible for their
presence in the culture supernatant of GAS, their occurrence may
influence the course of host-pathogen interactions. In this regard, we
note that it has been reported that
-enolase binds to plasminogen in
vitro (39), and binding of glyceraldehyde-3-phosphate
dehydrogenase to human pharyngeal cells induces phosphorylation of host
cell proteins (40). Hence, this enzyme appears to modulate
host cell signaling events.
Immunogenicity of the culture supernatant proteins in infected
hosts.
A general finding was that proteins with apparent secretion
sequences were more commonly immunogenic in the few infected hosts studied than proteins lacking these sequences. Unlike the proteins without the apparent secretion signal sequences, 12 of the 16 proteins
with secretion signal sequences had host antibody reactivity, and 8 of
them were reactive with all five sera tested (Table 5). As expected,
serotype-specific M3 protein, M1 protein, and streptococcal inhibitor
of complement were not immunoreactive with some of the sera tested.
Although many antigenic proteins were identified by the two-dimensional
Western blot analysis, in this study we chose to clone and overexpress
only four of them, mainly to confirm their identity and immunogenicity.
These four proteins were selected because they had apparent secretion
signal sequences and were previously uncharacterized GAS molecules. In
addition, inasmuch as two GAS extracellular proteases are known
virulence factors (27, 29, 30), it is reasonable to
speculate that the serine protease homologue also contributes to
host-pathogen interactions. However, this issue clearly requires
additional analysis. Two factors that contributed to the selection of
SP22 were its regions of identity with the human Mac-1-like protein and
the presence of an RGD motif. RGD motifs present in proteins made
by microbial pathogens mediate binding to human integrins, thereby
triggering downstream cell-signaling effects. Several microbial
integrin binding proteins with the RGD motif are proven virulence
factors, including the extracellular cysteine protease (SpeB) made by
serotype M1 organisms (22, 45). We will report elsewhere on
extensive characterization of the SP22 molecule, including cell
biologic and immunologic aspects (B. Lei et al., unpublished data).
 |
ACKNOWLEDGMENTS |
We thank I. Abdi for technical assistance; J. C. Smoot and
M. S. Chaussee for assistance and helpful discussions; M. Garfield for protein sequencing; H. Hill, L. G. Veasy, and D. Low for
providing sera; and N. P. Hoe for critical reading of the manuscript.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratory of
Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National
Institute of Allergy and Infectious Diseases, National Institutes of
Health, 903 S. 4th St., Hamilton, MT 59840. Phone: (406) 363-9315. Fax: (406) 363-9427. E-mail: jmusser{at}niaid.nih.gov.
Editor:
E. I. Tuomanen
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Infection and Immunity, December 2000, p. 6807-6818, Vol. 68, No. 12
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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