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Infection and Immunity, December 2000, p. 7126-7131, Vol. 68, No. 12
0019-9567/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
mig-14 Is a Horizontally Acquired, Host-Induced Gene
Required for Salmonella enterica Lethal Infection in
the Murine Model of Typhoid Fever
Raphael H.
Valdivia,1,*
Daniela M.
Cirillo,1,*
Anthea K.
Lee,1
Donna M.
Bouley,2 and
Stanley
Falkow1
Department of Microbiology and
Immunology1 and Department of
Comparative Medicine,2 Stanford University
School of Medicine, Stanford University, Stanford, California 94305
Received 19 April 2000/Returned for modification 14 June
2000/Accepted 21 August 2000
 |
ABSTRACT |
We have characterized a host-induced virulence gene,
mig-14, that is required for fatal infection in the mouse
model of enteric fever. mig-14 is present in all
Salmonella enterica subspecies I serovars and maps to a
region of the chromosome that appears to have been acquired by
horizontal transmission. A mig-14 mutant replicated in host
tissues early after infection but was later cleared from the spleens
and livers of infected animals. Bacterial clearance by the host
occurred concomitantly with an increase in gamma interferon levels and
recruitment of macrophages, but few neutrophils, to the infection foci.
We hypothesize that the mig-14 gene product may repress
immune system functions by interfering with normal cytokine expression
in response to bacterial infections.
 |
TEXT |
There are six subspecies of
Salmonella enterica that are capable of colonizing both
warm- and cold-blooded animals (1, 9). S. enterica subspecies I serovars are strictly associated with
infection of warm-blooded animals and can cause a wide a range of
diseases, including gastroenteritis, bacteremia, and typhoid fever
(11). S. enterica serovar Typhimurium (from here on referred to as serovar Typhimurium) is the causative agent of
gastroenteritis in humans and a typhoid-like disease in mice (11). Serovar Typhimurium survives and replicates within
phagocytic cells of the reticuloendothelial system, resulting in the
release of proinflammatory cytokines in response to bacterial compounds such as lipopolysaccharide (LPS) and peptidoglycan (11, 16, 17,
20). Two of these inflammatory cytokines, tumor necrosis factor
alpha (TNF-
) and gamma interferon (IFN-
), are required for host
clearance of Salmonella infections (11, 12, 16, 18). Treatment of infected animals with IFN-
decreases the numbers of bacteria found in the spleen early in infection, and injection of anti-TNF-
or anti-IFN-
abolishes the ability of mice
to clear sublethal doses of serovar Typhimurium (12, 26, 27). Recently, it has been reported that modified
Salmonella lipid A (an LPS component) can reduce the
LPS-mediated expression of TNF-
by human monocytes and E-selectin by
endothelial cells (14). These lipid A modifications are
regulated by the PhoP/PhoQ virulence regulon (7, 13),
suggesting a potential role for PhoP/PhoQ-activated genes not only in
intracellular survival but also in lowering cytokine and chemokine production.
In the present study we characterized the virulence properties and
evolutionary history of a host-induced serovar Typhimurium factor with
potential immunomodulatory functions. A previous study described a
PhoP/PhoQ-dependent, macrophage-inducible promoter, fmi-14, which exhibited a 22-fold induction within murine
macrophages (36). To identify the open reading frame (ORF)
associated with fmi-14, we isolated an adjacent 2.2-kb
serovar Typhimurium DNA fragment by recombinational cloning
(6). Sequence analysis of this fragment revealed a single
ORF (mig-14) encoding a putative 298-amino-acid (aa) soluble
polypeptide with limited homology to Bacillus subtilis
RecG, an ATP-dependent DNA helicase (27% identity over a 102-aa
overlap), and the LysR-like activator AppY from Escherichia
coli (30% identity over 59 aa). To disrupt mig-14, a
1.6-kb ClaI fragment containing the 5' end of
mig-14 was cloned into the allelic-exchange vector pRTP-1
(34), and an
Kanr (aph) cassette
(8) was inserted at a unique BclI site within the
mig-14 coding sequence. The resulting plasmid was
transformed into serovar Typhimurium strain SL1343R (trp
rpsL) and gene replacement events were identified by Southern blot
hybridization. The mig-14::aph mutation
was mobilized into the virulent strain SL1344 (xyl hisG rpsL) by P22-HT-mediated transduction to create the strain RVY-5.
Virulence defects of mig-14 mutants.
We
characterized the virulence defects of RVY-5 by determining the
competitive index (CI) of the mutant strains at various time points.
The CI is the ratio of RVY-5 to SL1344 present in different organs
after challenge with a 1:1 ratio of wild-type to mutant bacteria.
Groups of four female BALB/c mice were injected intraperitoneally with
an equal mixture of SL1344 and RVY-5 (5 × 102
bacteria total). The mice were killed at days 3 and 5 postinfection; the spleens and livers were collected, homogenized, and plated on
selective media to determine the number of CFU of each input strain. At
day 3, RVY-5 and SL1344 were equally efficient at colonizing the liver
(mean CI = 0.49 ± 0.29) and spleen (mean CI = 0.81 ± 0.27). However, by day 5, RVY-5 showed an ~10- to 50-fold
reduction in its ability to compete with SL1344 (liver mean CI = 0.09 ± 0.07; spleen mean CI = 0.17 ± 0.16). To
determine whether the mig-14 mutation would impair the
ability of serovar Typhimurium to colonize the gut-associated lymphoid
tissue, we performed mixed infections and calculated the CI of RVY-5
after oral inoculation (Fig. 1A). Groups
of four mice were inoculated intragastrically with equal numbers
(106 bacteria total) of SL1344 and RVY-5. The animals were
killed at days 3 and 5 postinfection, and bacteria from the Peyer's
patches (PP), mesenteric lymph nodes (MLN), spleen, and liver were
recovered on selective plates. At day 3 postinfection, RVY-5 colonized
the PP as efficiently as SL1344 (at this time point only two out of the
four mice showed bacterial spread beyond the MLN). At day 5, the
bacterial load of RVY-5 in the PP was still similar to that of SL1344,
yet we observed a 15- to 30-fold decrease in RVY-5's CI in the spleen
and liver (Fig. 1A). Since it is possible that the RVY-5 CI in the
spleen and liver reflects a delayed kinetics in the seeding of these
organs rather than survival defects, we compared the growth kinetics of
RVY-5 in the spleen and liver. Mice were infected orally with either
5 × 106 SL1344 organisms or 5 × 106
RVY-5 organisms (four mice per strain per time point). Animals were
killed at days 2, 5, 7, 11, and 13 postinfection, and the numbers of
CFU per gram of tissue were determined. Early during infection (day 2 and day 5) the bacterial load in the liver and spleen increased at
similar rates in mice infected with both RVY-5 and SL1344. At day 5 the
mean log10 CFU of SL1344 was 4.71 ± 0.53 (n = 4) and that of RVY-5 was 4.39 ± 1.01 (n × 4). After day 5, the number of CFU per gram of
tissue began to decrease in RVY-5-infected mice, and by day 13, the
animals displayed a low-level chronic infection with no outward
symptoms of disease (spleen log10 CFU of 4.71 ± 0.18 [n = 3] at day 7, 4.24 ± 0.16 [n = 3] at day 11, and 3.89 ± 1.29 [n = 3] at
day 13). In contrast, SL1344 replicated exponentially until the deaths
of the animals occurred, between days 7 and 11 (log10 CFU
of 7.06 ± 0.12 [n = 4] at day 7 and 7.28 ± 1.38 [n = 4] at day 11). These experiments
indicated that RVY-5 was capable of replicating in mice early during
infection but was unable to overcome the host defenses at later stages.
The bacterial load in mice infected with RVY-5 continued to decrease, so that 45 days after the oral inoculation with >106 CFU,
no bacteria could be recovered from infected tissues (data not shown),
suggesting that RVY-5 was cleared from tissues rather than persisting
as a chronic infection. The oral 50% lethal dose (LD50)
for RVY-5 in BALB/c mice was determined by infection with 10-fold
dilutions of either SL1344 or RVY-5 and monitored for 45 days. The oral
LD50 (31) for RVY-5 was 1.21 × 108 bacteria per mouse, while the LD50 for
SL1344 was less than 1 × 103 bacteria per mouse,
suggesting that the competition experiments had underestimated the
virulence defects of mig-14 mutants. One possible
explanation for the discrepancy between the CI and the LD50
measurements is that the mig-14 mutation may be partially complemented in trans by coinfection with wild-type serovar
Typhimurium. In support of this, we have observed that in mixed
infections performed with higher infectious doses, mig-14
mutants replicate at rates similar to those of wild-type bacteria (data
not shown).

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FIG. 1.
Virulence defects of mig-14 mutants. (A)
Growth defects of RVY-5 in mixed infections. Groups of four mice were
infected orally with a 1:1 mixture of SL1344 (wild type) and RVY-5
(mig-14::aph) (106 CFU per
mouse). At days 3 and 5 postinfection, PP ( ), MLN ( ), spleens (S)
( ), and livers (L) ( ) were collected and the number of CFU for
each strain was determined. The CI for RVY-5 was calculated as the
ratio of RVY-5 to SL1344 recovered from the various organs. At day 3 postinfection, both strains colonized the PP, but RVY-5 was less
efficient at colonizing the MLN, S, and L. At day 5, the CI for RVY-5
in the PP was about 1, while the CI in the MLN, L, and S ranged from
0.1 to 0.01 (x = mean CI at day 5). (B) In vivo growth kinetics of
RVY-5. Groups of four mice were infected orally with either SL1344 or
RVY-5 (5 × 106 organisms per mouse) and the numbers
of CFU per gram of spleen were determined at days 2, 5, 7, 11, and 13 (see text). For days 5, 7, and 11 the statistical difference in the
mean log10 CFU per gram of spleens infected with either
SL1344 or RVY-5 was determined with the Student t test. At
day 5, the mean CFU per gram of spleen for SL1344 and RVY-5 were not
significantly different (P > 0.2). At day 7 and day
11, the differences in mean CFU per gram of spleen were significant
(P < 0.001). Data shown are representative of at least
three independent experiments.
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We confirmed that the virulence defect of RVY-5 was not due to polar
effects of the
interposon on the expression of other genes by
introducing mig-14 on an episomal element into RVY-5. mig-14 was amplified by PCR and inserted as an
EcoRI fragment into the miniF-derived vector pBDJ121
(Ampr) (gift of B. Jones). The resulting plasmid, pMIG14,
was transformed into RVY-5 by electroporation. Groups of five mice were
infected intragastrically with 106 CFU of SL1344, RVY-5, or
RVY-5(pMIG14). SL1344 and RVY-5(pMIG14) killed all mice within 6 to 10 days, whereas all mice infected with RVY-5 survived.
Pathology and cytokine profiles of RVY-5-infected mice.
We
assessed the virulence properties of RVY-5 in tissue culture models of
infection and have determined that mig-14 is not required
for invasion or replication within cultured or primary macrophages
(data not shown). However, RVY-5 has a survival defect in the spleens
and livers of infected animals during the later stages of infection,
suggesting that RVY-5 may be more susceptible to clearance by the host
after the immune system has been stimulated. We investigated the
pathology of RVY-5 infections by collecting spleens, livers, MLN, and
PP from mice infected with 106 RVY-5 or SL1344 organisms at
2, 6, and 11 days after oral inoculation. The tissues were fixed in
10% buffered neutral formalin solution, processed for routine
histology, and examined by light microscopy. In both groups of mice,
the most consistent and striking lesions were found in the spleen (Fig.
2) and liver (not shown). At day 2 postinfection, rare to scattered neutrophil accumulations surrounding central necrotic cell debris were found in the splenic red pulp in four
out of five mice infected with SL1344 and in three out of five mice
infected with RVY-5 (data not shown). However, at day 6, the splenic
lesions induced by RVY-5 were strikingly different from lesions induced
by SL1344. SL1344-infected mice had severe coalescing splenic necrosis,
while RVY-5-infected mice had lower numbers of inflammatory foci
composed of mononuclear and fibroblastic cells, few neutrophils, and
minimal necrosis (Fig. 2). The severe parenchymal necrosis and the lack
of resolution of splenic and liver abscesses in the SL1344-infected
mice most likely contributed to the mortality observed after day 6 postinoculation.

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FIG. 2.
Histopathology of mice infected with SL1344 and RVY-5.
At day 6 postinfection, the overall splenic architecture is disrupted
in mice infected with SL1344 (A). Necrotic cell debris (white arrow)
predominates and rare viable neutrophils (black arrow) are present (C).
In contrast, at 6 days postinfection, normal splenic architecture is
largely maintained in the spleens of RVY-5-infected mice (B) and the
affected areas contain chronic inflammatory cells consisting of
mononuclear cells (lymphocytes, macrophages, and plasma cells),
fibroblasts, few neutrophils, and minimal necrosis (D). Spleens were
removed from infected mice, fixed in 10% buffered neutral formalin,
embedded in paraffin, sectioned, and stained with hemotoxylin-eosin.
(Bars = 200 µm in panels A and B [×10], and 25 µm in panels
C and D [×80].)
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We examined the role of host response to serovar Typhimurium infection
by examining the serum cytokine profiles of mice infected with either
RVY-5 or SL1344 (Fig. 3). Blood was
collected in a terminal bleed from the hearts of infected animals on
days 2, 5, 7, and 11 postinfection. The number of CFU in the spleen and the levels of inflammatory cytokines (IFN-
and TNF-
) in the circulating blood were determined with a capture cytokine enzyme-linked immunosorbent assay (Genzyme). The levels of TNF-
in the sera of
RVY-5- and SL1344-infected mice were not significantly different between days 2 and 7 postinfection (data not shown). In contrast, mice
infected with SL1344 and RVY-5 displayed a differential IFN-
response. As previously reported (19, 30), SL1344-infected mice showed steadily increasing levels of IFN-
until the deaths of
the animals occurred (days 7 and 11). Interestingly, mice infected with
RVY-5 showed IFN-
levels significantly higher than those of serum
from SL1344-infected mice (day 7), even though the bacterial load of
RVY-5 was 100- to 1,000-fold lower than that of SL1344. These results
suggest that infected mice were able to mount a stronger IFN-
response to RVY-5 than to SL1344.

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FIG. 3.
Serum IFN- profiles of infected mice. Blood was
collected from the hearts of infected mice on days 2, 5, 7, and 11 after the oral infection, and cytokine enzyme-linked immunosorbent
assay for IFN- was performed on the serum. Spleens were removed and
homogenized and CFU per gram of spleen were determined. On day 2 all
animals displayed serum cytokine levels largely below the threshold of
sensitivity of the detection kit. By day 5, mice infected with RVY-5
and SL1344 had similar levels of cytokines and bacterial loads in the
spleen (log10 CFU, 3.48 ± 0.9 [n = 4] for SL1344 and 3.31 ± 0.81 [n = 4] for
RVY-5). At day 7, RVY-5-infected mice displayed significantly higher
levels of IFN- than mice infected with SL1344 even though the
bacterial loads present in lymphoid organs were significantly lower
(log10 CFU per gram of spleen, 5.75 ± 0.5 [n = 4] for SL1344 and 2.75 ± 0.06 [n = 4] for RVY-5). By day 11, concomitantly with
clinical recovery, there was a drastic decrease in cytokine production
in mice infected with RVY-5.
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IFN-
enhances the macrophage's capacity to generate respiratory
bursts, increases the rate of lysosomal fusion with
bacterium-containing phagosomes, and stimulates the production of
nitric oxide (NO) from inducible NO synthase (iNOS) (39).
Innate immune responses to intracellular pathogens, such as serovar
Typhimurium, begin with interleukin-12 (IL-12) production by infected
cells, leading to IFN-
production by NK cells, which results in iNOS
activation in macrophages (4). In vivo depletion of IL-12
with anti-IL-12 antibodies or inhibition of NO production with
NG-monomethyl-L-arginine augments serovar typhimurium
growth in infected tissues (18, 21-24, 35). NO has been
reported to have bacteriostatic properties but is also required for
proper macrophage and neutrophil migration into the infected spleen
(23). We hypothesize that a robust IFN-
response to RVY-5
may explain why the mice contained the growth of this mutant but not of
its isogenic wild-type parent. It is possible that by interfering with
the ability of the host to mount a full IFN-
response, serovar
Typhimurium enhances its survival during chronic infections. Future
experiments will be aimed at determining which cytokine/chemokine
response pathway may be compromised in mice infected with serovar Typhimurium.
mig-14 is part of a horizontally acquired set of
genes.
The 2.2-kb DNA fragment containing mig-14 has a
39.9% GC content. This is in marked contrast with the GC content of
the Salmonella chromosome (52%) (1). Since
virulence genes with a low GC content are often part of larger clusters
of virulence genes (pathogenicity islands), we isolated a 9-kb
EcoRI fragment of the Salmonella chromosome
containing mig-14 and adjacent genes. DNA sequence analysis
of this region indicated that mig14 maps to centisome 61 (smpB-nrdE intergenic region) in the S. enterica
chromosome. This region of the Salmonella chromosome
(centisomes 59 to 61) contains several genetic markers that are absent
from the E. coli chromosome and which are responsible for
some of Salmonella's unique physiological and biochemical
characteristics (Fig. 4). The 9-kb
EcoRI fragment contained 10 ORFs adjacent to
mig-14. One ORF, present at the 5' border of
mig-14, encodes a putative protein with significant homology
to the Shigella flexneri VirK. VirK is required for the
posttranslational processing of the intracellular spreading factor IcsA
(28). The nine ORFs at the 3' border of mig-14
encode NxiA, a putative Ni2+-containing hydrogenase; TctE
and TctD, two previously described regulators of tricarboxylate
transport in S. enterica (38); three ORFs
encoding a putative periplasmic membrane protein and two integral
membrane proteins that are likely responsible for tricarboxylate
transport (37); and three ORFs with high nucleotide homology
to the E. coli genes o360, ygaF, and
gabD (5) (Fig. 4). mig-14 appears to
be the only virulence factor gene in this region since serovar
Typhimurium strains bearing mutations in virK,
nxiA, and the structural (tctI) and regulatory
(tctDE) genes of the tct locus were able to kill
mice after an oral challenge with 106 bacteria per animal
(reference 2 and data not shown). This was not
unexpected since we have observed, through the use of gfp
fusions, that neither the tct locus nor nxiA is
induced in host cells (data not shown).

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FIG. 4.
The mig-14 locus. (A) mig-14 is
located in a region of the Salmonella chromosome known to
harbor horizontally acquired virulence genes and other
Salmonella-specific genes. The map location of
ivi genes, iroN, and virK has been
previously described (2, 3, 15, 33). (B) mig-14
is flanked by genes encoding a putative nickel transporter
(nxiA) and a tricarboxylate transport apparatus
(tctI) and homologues of the S. flexneri virK
gene and the E. coli ORFs o360, ygaF,
and gabD. In E. coli, o360 and
ygaF are adjacent to phage-like ORFs and the tRNA
ileY (5). DNA hybridization experiments with
PCR-generated probes (black bars) spanning internal regions of
virK, mig-14, nxiA, tctDE,
and tctC indicated that mig-14 is present only in
S. enterica subtypes I, IIIa, and IIIb. In contrast, the
adjacent gene nxiA is present in all S. enterica
subtypes but not S. bongori, while the tctI locus
is found in all Salmonella species tested. The dendrogram
(not to scale) shows the evolutionary relationship between varied
Salmonella serovars as determined by DNA hybridization and
multilocus enzyme electrophoresis (32). Representative
serovars tested were S. bongori 48:z35: and 44:r: and
S. enterica subgroup I serovars Typhi, Enteriditis,
Choleraesuis, Dublin, and Gallinarum, subgroup II serovars Phoenix and
50:b:z6, subgroup IIIa serovars 48:g1z51: and 41:z41z23: , subgroup
IIIb serovars 50:k:z and 61::c:z35, and subgroup IV serovars
Marina and Chameleon.
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In E. coli, o360 is adjacent to small ORFs with
homology to phage components and ileY, encoding a tRNA
(5). Since several phages and pathogenicity islands have
been described to insert at tRNA sites (1, 9, 10), it is
possible that the acquisition of S. enterica-specific genes
at this locus may have begun by multiple insertions at ileY.
Bäumler and Heffron have described this region of the
Salmonella chromosome as containing a "mosaic-like structure" in which different segments are present (or absent) in
different S. enterica and Salmonella bongori
serovars (2). This is in contrast to pathogenicity islands,
where large clusters of genes appear to have been acquired as a unit.
Sequence analysis of the region spanning virK,
mig-14, nxiA, the tctI operon, and the
S. enterica homologues of o360 and
ygaF indicated the presence of directed and inverted repeats
between mig-14, nxiA, and virK. For
example, the 3' end of mig-14 displays two tandem 35-bp
direct repeats approximately 300 bp downstream of the putative
transcriptional terminator. To test the possibility that each ORF was
acquired (or deleted) independently during the evolution of S. enterica, we probed a collection of S. enterica and
S. bongori isolates for the presence of different segments
of the mig-14 locus (Fig. 4). These DNA hybridization
experiments indicated that mig-14 was acquired by S. enterica after its split from the S. bongori lineage
but was subsequently deleted in S. enterica subspecies II
(Salamae) and IV (Houtenae). Furthermore, the acquisition or deletion
of mig-14 appears to have occurred independently of its neighboring genes virK and nxiA.
Mig-14 appears to be a unique virulence factor. Unlike the bulk
of virulence genes, mig-14 has no apparent role in the
primary metabolism or housekeeping functions of the bacterium, it has been acquired as a mobile genetic element, and its expression is
restricted to the intracellular environment of host cells
(36). More importantly, mig-14 appears to be a
late-acting factor, because the phenotype of the mutant is not apparent
until several days postcolonization. The molecular function of Mig-14
is unclear. The limited homology of Mig-14 to DNA-interacting proteins
could indicate a potential role in the regulation of gene expression. If this is the case, it can be expected that the expression of other
late-acting virulence factors would be under the control of Mig-14 and,
indirectly, of PhoP/PhoQ. Future experiments will be aimed at
determining the molecular mechanism of Mig-14 function and its
potential role in immunomodulation.
A recurrent theme in Salmonella pathogenesis is the presence
of mobile genetic elements that enhance the bacterium's pathogenic properties by conferring a broader host range or resistance to the
host's immune system (1, 25, 29). A region of genetic "plasticity" in the chromosome, such as that encountered at
centisome 61, may have permitted the rapid acquisition and deletion of
virulence factors, such as Mig-14, as S. enterica species
adapted to new warm-blooded hosts.
Nucleotide sequence accession number.
The EcoRI
fragment of the Salmonella chromosome containing
mig-14 and adjacent genes has been deposited in GenBank
under accession no. AF020810.
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ACKNOWLEDGMENTS |
We gratefully acknowledge members of the Falkow laboratory for
helpful discussions and Bruce Stocker for supplying S. enterica and S. bongori serovar collections.
This work was supported by PHS grant AI26195.
R.H.V. and D.M.C. contributed equally to this work.
 |
FOOTNOTES |
*
Corresponding authors. Present address for Raphael H. Valdivia: Department of Molecular and Cell Biology, University of
California-Berkeley, 401 Barker Hall, Berkeley, CA 94720. Phone: (510)
642-5756. Fax: (510) 642-7846. E-mail:
valdivia{at}uclink4.berkeley.edu. Present address for Daniela
M. Cirillo: Lab. Microbiologia Clinica, Ospedale Molinette, Cso
Bramante 88, 10126 Torino, Italy. Phone: 39-011-6335247. Fax:
39-011-6335194. E-mail: danielamc{at}mclink.it.
Editor:
A. D. O'Brien
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Infection and Immunity, December 2000, p. 7126-7131, Vol. 68, No. 12
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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