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Infection and Immunity, March 2000, p. 1714-1718, Vol. 68, No. 3
Departments of Biochemistry and Molecular
Biology1 and
Medicine,3 New York Medical College,
Valhalla, New York 10595, and Departments of Pathology and
Laboratory Medicine and Microbiology and Molecular Genetics,
University of Texas Medical School at Houston, Houston, Texas
770302
Received 23 July 1999/Returned for modification 27 September
1999/Accepted 22 November 1999
The vls (variable major protein [VMP]-like sequence)
locus of Borrelia burgdorferi encodes an antigenic
variation system that closely resembles the VMP system of relapsing
fever borreliae. To determine whether vls sequences are
present consistently in low-passage, infectious isolates of B. burgdorferi, 22 blood and erythema migrans biopsy isolates from
Lyme disease patients in Westchester County, New York, were examined by
Southern blot and PCR analysis. Each of the strains contained a single
plasmid varying in size from 21 to 38 kb that hybridized strongly with
a vlsE probe based on the B. burgdorferi B31
sequence. In contrast, PCR products were obtained with only 10 of the
22 strains when primers corresponding to the 5' and 3' regions of the
B31 vlsE sequence outside the variable cassette region were
used. Only 2 of 16 B. burgdorferi-infected tick specimens
yielded detectable PCR product. Eight of 10 strains that yielded a PCR
product under these conditions were type 1 (a genotype with a high rate
of dissemination), according to PCR-restriction fragment length
polymorphism analysis of intergenic rDNA sequences, whereas the
isolates that did not yield vlsE PCR products were either
type 2 or type 3. Comparison of the sequences of cloned PCR products
from the patient isolates indicated a high degree of identity to the
B31 sequence, with most of the differences restricted to the
hypervariable regions known to undergo sequence variation. Taken
together, these results both reinforce previous evidence that
vls sequences are present consistently in low-passage Lyme
disease spirochetes and indicate that both highly conserved and
heterogeneous subgroups exist with regard to vlsE sequences.
Lyme disease, a multisystem disorder
with possible cutaneous, neurologic, and rheumatologic manifestations,
is the most common arthropod-borne disease in the United States
(4). The etiologic agent of the disease, Borrelia
burgdorferi, is transmitted to humans by the bite of an infected
tick of the Ixodes ricinus complex (Ixodes
scapularis or Ixodes pacificus in the United States)
(1). In untreated humans and other mammalian hosts,
spirochetal infection can persist in certain tissues for extended
periods, even in the presence of an active immune response (11,
18). Mechanisms underlying this long-term persistence have not
been elucidated.
The vls locus of B. burgdorferi strain B31
consists of a single expressed gene (vlsE), which encodes a
surface-exposed lipoprotein, and 15 silent (unexpressed) cassettes,
which have >90% sequence identity to the central cassette region of
vlsE (23). Most of the sequence differences
between the cassette regions are concentrated in six short DNA segments
termed variable regions (VR-I through VR-VI). Unidirectional
recombination of segments of the vls silent cassettes into
the cassette region of vlsE results in extensive antigenic
variation in the expressed VlsE protein (23, 24). In strain
B31, the vls locus is present on the linear plasmid lp28-1
(23), which was detected by hybridization in
high-infectivity clones of B. burgdorferi B31 and Sh-2-82
but not in most low-infectivity clones (23; J. E. Purser and S. J. Norris, unpublished data). Therefore, it has
been postulated that VlsE represents a virulence factor, as well as an
antigenic variation protein (23).
It is important to establish whether vls systems are
consistently present in Lyme disease borreliae. In the present study, the presence of vls sequences in multiple isolates from Lyme
disease patients and in ticks was examined.
Detection of vls sequences in clinical isolates of
B. burgdorferi.
Twenty-two B. burgdorferi
clinical isolates were analyzed for the presence of vls
sequences by Southern blot analysis of pulsed-field gel electrophoresis
(PFGE)-separated plasmid DNA. B. burgdorferi isolates were
obtained from either skin biopsies of erythema migrans (EM) lesions or
blood of Lyme disease patients with EM attending the Lyme Disease
Diagnostic Center of Westchester Medical Center as previously described
(16, 21). B. burgdorferi isolates were grown in
BSK-H medium (Sigma Chemicals, St. Louis, Mo.) supplemented with 6%
rabbit serum for 2 to 4 weeks at 33°C. Spirochetes were harvested and
lysed in agarose blocks (1.8% low-gelling agarose) as previously
described (19), and plasmids were resolved by PFGE on a
Bio-Rad contour-clamped homogeneous electric field DR II apparatus at
constant voltage (6 V/cm) for 19 h with a switch time of 0.9 to
2.5 s in 0.5× Tris-borate-EDTA buffer (pH 8.3) at 14°C. DNA was
transferred to a positively charged nylon membrane and hybridized with
a vlsE probe which was prepared by PCR amplification of
B. burgdorferi B31 DNA with the vlsE-specific
primers F4120 and R4066 as previously described (23).
0019-9567/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Conservation and Heterogeneity of vlsE
among Human and Tick Isolates of Borrelia
burgdorferi

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FIG. 1.
Localization of vls sequence region to
various plasmids by Southern hybridization in representative clinical
isolates. Plasmids were separated by PFGE and transferred to nylon
membranes, and the blots were hybridized with a vlsE probe.
Lane 1, BL36; lane 2, BL146; lane 3, B57; lane 4, B282; lane 5, B287;
lane 6, B294; lane 7, B311. The migration positions of lp28-1 and lp38
are indicated on the left, based on the migration of
contour-clamped homogeneous electric field DNA size standards
(Bio-Rad) and hybridization to the ospD probe.
TABLE 1.
vlsE plasmid hybridization and PCR results in
clinical isolates of B. burgdorferi
PCR amplification of vlsE. Given the finding that vls sequences exist in all clinical isolates analyzed, it was of interest to determine the relative sequence variation of vlsE in these isolates. As already stated, the vls region of strain B31 consists of 15 silent cassettes and 1 expression cassette within vlsE (23). The expression cassette is flanked by unique sequences, which allows specific amplification of this region by PCR. DNA was extracted from 1-ml cultures of B. burgdorferi clinical isolates using the Isoquick nucleic acid extraction kit (9, 10, 15). PCR amplification was performed using the primers F4120 and R4066 described previously (23). Amplification was carried out for 35 cycles with denaturation at 94°C for 30 s, annealing at 52°C for 30 s, and extension at 72°C for 30 s, and PCR products were analyzed by electrophoresis on 1% agarose gels.
Although all isolates contained sequences that hybridized to the vls probe, only 10 of 22 yielded a 660-bp, vlsE-specific PCR product (Table 1). The most likely explanation for this finding is that the sequences in the region of the primers (based on the B31-5A3 vlsE sequence upstream and downstream of the central cassette) were divergent in the strains where amplification was not obtained. Indeed, the vls sequences reported for the North American B. burgdorferi isolates 297 (6) and cN40 (S. Feng and S. W. Barthold, unpublished data) are only ~40% identical and ~60% similar to the B31-5A3 sequence; many of these sequence differences occur in the invariant sequences outside the variable regions. Attempts to amplify vlsE from the cN40 strain using a variety of primers based on the B31-5A3 sequence have been unsuccessful (M. B. Lawrenz and S. J. Norris, unpublished data). Preliminary sequence data from B. garinii vlsE indicate a moderate degree of sequence divergence both within and outside the central cassette (D. Wang and S. J. Norris, unpublished data). Another possibility is that an intact vlsE gene is not present in all strains and the vls sequences that are present represent an inactive, vestigial locus. This explanation seems unlikely, however, in that a large proportion of culture-positive EM patients and nearly all Lyme disease patients beyond this stage express antibodies against VlsE (7). There is a remarkable correlation between vlsE PCR positivity and ribosomal DNA (rDNA) spacer restriction fragment length polymorphism (RFLP) type. Previous studies have demonstrated that clinical isolates of B. burgdorferi consist of several different genotypes, based on PCR-RFLP typing of the 16S-23S rDNA spacer (8, 9). Furthermore, patients infected with type 1 organisms had a greater likelihood of disseminated infection than those infected with other genotypes (20). It is interesting that 8 of 10 isolates which were vlsE positive by PCR are classified as type 1 organisms, whereas none of the 12 vlsE PCR-negative isolates were type 1 (P = 0.0001) (Table 1). This intriguing result could mean that a certain vlsE subgroup correlates with dissemination, or simply that there is a predominant clonal line in the New York area that contains both RFLP type 1 and B31-like vlsE genotypes. Similar PCR analysis was carried out for I. scapularis collected by the drag-cloth method in Westchester County, New York (5). DNA was isolated from individual ticks as previously described (15) and employed directly for PCR. Of 16 B. burgdorferi-infected ticks (based on PCR amplification of the 16S-23S rDNA spacer [8, 9]), only 2 yielded PCR product with vlsE-specific primers. Southern hybridization with the vlsE probe was not attempted with tick extracts due to the small amounts of material available. However, it is reasonable to assume that tick isolates generally contain vls sequences, since partial sequences of vls silent cassettes or vlsE have been identified in the tick-derived strains examined to date (B31, N40, and Ip90). Thus, this result suggests that only a small subset of infected ticks contain B. burgdorferi with a vlsE sequence that could be amplified with a primer pair based on the B31 sequence. The reason for the relatively low frequency of vlsE amplification in tick-derived organisms relative to the clinical isolates in this study is not clear. It is possible that mammalian infection may "select" for strains containing the vls locus or vls sequences in an expression cassette. lp28-1 is rapidly lost during in vitro passage of B. burgdorferi B31 and Sh-2-82 (23), yet in vitro growth rates are apparently unaffected by this loss (12). Survival and growth of B. burgdorferi in ticks may also be unaffected by lp28-1 loss, permitting the accumulation of vls-deficient strains. There are other possible explanations, including a positive selection for a B. burgdorferi B31 vlsE subgroup in Lyme disease patients, as suggested above.Sequence analysis of individual vlsE clones. The availability of vlsE PCR products from some of the clinical and tick specimens permitted comparison of these sequences with the well-characterized B31-5A3 vlsE sequence. Preliminary direct sequence analysis of the PCR products revealed that some of the samples contained a mixture of B. burgdorferi clones expressing different vlsE variants. It was thus necessary to clone the PCR products into a plasmid vector prior to sequence analysis. After amplification, the 3' ends of the PCR products were adenylated with Taq polymerase, and the resultant products were cloned into the pCR2.1 vector (Invitrogen, Carlsbad, Calif.) and transformed into E. coli SURE2 cells (Stratagene, La Jolla, Calif.).
Sequences obtained with representative PCR product clones from Lyme disease patient isolates are shown in Fig. 2A. A total of seven PCR product clones were analyzed: two each from patient isolates B14, B247, and B296 and one from B294. When the deduced amino acid sequences were aligned with the corresponding VlsE sequence from B31-5A3, a high degree of sequence identity was observed. This high homology was also present at the DNA sequence level (data not shown). Nearly all of the differences were restricted to the six variable regions (VR-I through VR-VI), which contain most of the sequence differences among the vls silent cassettes of B. burgdorferi B31-5A3 (23). Indeed, all but six of the deduced amino acid sequence differences could be attributed to recombination with silent cassette sequences that had been identified in B31-5A3 (data not shown). Based on these results, each of these four clinical isolates contain vls loci nearly identical to that of B31-5A3. As mentioned above, two PCR product clones were sequenced from each of the human isolates B14, B247, and B296. The pairs of PCR sequences were identical for strains B14 and B247. However, the B296 PCR product sequences had differences in VR-V and VR-VI (Fig. 2A). Thus, strain B296 contains at least two vlsE variants.
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ACKNOWLEDGMENTS |
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We thank Jerrilyn K. Howell for technical support for this project and Denis Liveris for the RFLP typing.
This work was supported by grants AR41511 (to I.S.) and AI37277 (to S.J.N.) from the National Institutes of Health.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Pathology and Laboratory Medicine, University of Texas Medical School at Houston, P.O. Box 20708, Houston, TX 77225. Phone: (713) 500-5338. Fax: (713) 500-0730. E-mail: norr{at}casper.med.uth.tmc.edu.
Present address: Pfizer, Inc., Central Research, Groton, CT 06340.
Editor: D. L. Burns
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