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Infection and Immunity, August 2000, p. 4720-4724, Vol. 68, No. 8
Departments of Pathology and Laboratory
Medicine, Indiana University School of Medicine, Indianapolis,
Indiana 46202
Received 24 February 2000/Returned for modification 2 April
2000/Accepted 5 May 2000
Differences in gene expression between Pneumocystis
carinii-infected and noninfected rats were examined. Total RNA
was isolated from homogenized rat lungs and then subjected to
differential display with combinations of oligo(dT) and various
arbitrary PCR primers. Approximately 50 differentially expressed bands
were observed. Several of these DNA bands were isolated, reamplified, and cloned. The cloned DNA fragments were used as probes to perform Northern hybridization on RNA from P. carinii-infected and
noninfected rat lungs. One clone was found to react with a 3-kb mRNA
from noninfected but not from P. carinii-infected rat lung,
suggesting that the gene represented by this clone was down-regulated
during P. carinii infection. The nucleotide sequence of
this clone was determined and found to be 97% homologous to the mouse
GATA-2 transcription factor. In situ hybridization using RNA probes
derived from this clone revealed that alveolar macrophages, resident
lung monocytes, and bronchial epithelial cells express the GATA-2 gene in the lung.
Pneumocystis carinii
causes pneumonia with a high mortality rate in immunocompromised
individuals, such as those with AIDS and organ transplants. Children
with severe malnutrition are also susceptible to P. carinii
infection. Although P. carinii is an extracellular parasite,
it must adhere to the surface of type I pneumocytes to proliferate.
However, an in vitro axenic culture of P. carinii was
recently reported (17). Adhesive proteins such as integrins
have been shown to enhance binding of P. carinii to type I pneumocytes.
During P. carinii infection, surfactant protein A and
integrins are up-regulated (1, 8, 20, 22). In contrast, the production of alveolar macrophage mannose receptor, which is
responsible for binding and engulfing P. carinii
(6), is reduced (11). The amount of total
surfactant phospholipid is also reduced during infection (2, 5,
10, 21, 23, 24, 25), with a decrease in phosphotidylcholine but
an increase in sphingomyelin (23, 25).
In order to further understand how host cells respond to P. carinii infection, we performed mRNA differential display to
detect genes that are up- or down-regulated during P. carinii infection. Three groups of two rats each were used. The
first group was immunosuppressed with dexamethasone (Dex) and then
infected with P. carinii (referred to as P. carinii infected hereafter). The second group was immunosuppressed with Dex only (referred to as Dex suppressed hereafter), and the third
group was nonimmunosuppressed and noninfected (referred to as normal
hereafter). We found that the expression of the GATA-2 transcription
factor is severely down-regulated during P. carinii infection. We also determined that ciliated bronchial epithelial cells,
alveolar macrophages, and resident lung monocytes are the cell types
that normally express the GATA-2 gene in the lung. This the first
report of GATA-2 expression in the pulmonary system and in a terminally
differentiated immune cell.
Animals and infection of animals with P. carinii.
Three groups of two rats each were used: normal, Dex suppressed, and
P. carinii infected. The Dex-suppressed group served as a
control to detect gene expression altered by immunosuppressive treatment with Dex. The normal rats served as the negative control. P. carinii infection in immunosuppressed rats was achieved
by transtracheal inoculation of lung homogenate from P. carinii-infected rats. The lung homogenate was shown to contain
P. carinii by light microscopy performed on stained smears.
Each rat was transtracheally injected with 0.2 ml of lung homogenate
containing 106 P. carinii organisms. The rats
developed P. carinii pneumonia in 5 to 8 weeks and were then sacrificed.
Isolation of RNA from animals for mRNA differential display.
The lungs of P. carinii-infected rats were lavaged with
normal saline, and the lavage fluids were assayed for the presence of
P. carinii by PCR, using the mitochondrial rRNA gene primers (29). The lavage fluids from both the Dex-suppressed and
normal rats were negative in the mitochondrial rRNA gene PCR,
indicating that P. carinii infection did not develop in
these rats. The lavage fluids from P. carinii-infected rats
were positive in the PCR, indicating that the rats were indeed infected
with P. carinii. The lungs were perfused from the pulmonary
artery with Hanks balanced salt solution to remove blood in order to
avoid interference with RNA isolation. Total RNA was isolated from
homogenized lung tissue. The isolated RNAs were treated with RNase-free
DNase I and then reverse transcribed using various oligo(dT) primers.
The cDNAs thus generated were used for mRNA differential display.
mRNA differential display.
The RNAmap Kit B, obtained from
GenHunter Co. (Nashville, Tenn.), was used to perform mRNA differential
display. Four different sets of oligo(dT) primers
(5'-T12MN-3') with the following sequences were used for
reverse transcription (RT): 5'-T12MG-3',
5'-T12MA-3, 5'-T12MT-3', and
5'-T12MC-3'. These primers are composed of 12 T residues
followed by a degenerate base M, which includes G, A, and C, and then
either G, A, T, or C at the extreme 3' end. Two hundred nanograms of
lung RNA from each animal group was used in each 20-µl RT mixture.
The RT mixture contained 25 mM Tris-HCl (pH 8.3), 37.6 mM KCl, 1.5 mM
MgCl2, 5 mM dithiothreitol, 50 µM deoxynucleoside
triphosphate, 1 µM T12MN primer, and 100 U of Moloney
murine leukemia virus reverse transcriptase. The reaction was carried
out in a thermocycler at 65°C for 5 min, 37°C for 60 min, and
95°C for 5 min. After 10 min at 37°C, the reverse transcriptase was
added to each reaction tube. The reverse-transcribed cDNA species were
then amplified by PCR with various combinations of a
5'-T12MN-3' primer used in RT and one of the five 10-bp
random primers (AP1 to -5). The PCR was run in a mixture containing 10 mM Tris-HCl (pH 8.4), 50 mM KCl, 1.5 mM MgCl2, 0.001%
gelatin, 2 µM deoxynucleoside triphosphate, 200 nM AP primer, 1 µM
T12MN primer, 2 µl of RT product, 10 µCi of
[ Isolation and reamplification of differentially expressed
bands.
The DNA in the differentially expressed bands was eluted by
boiling the gel slice containing the band for 15 min in 100 µl of
water. The eluted DNA was precipitated with ethanol, dried, and
resuspended in water. To obtain a sufficient amount of DNA for
subsequent studies, the eluted DNA of each band was reamplified with
the same primer set which produced the isolated band. The reamplified
products were electrophoresed on agarose gels, and the band of the
correct size was isolated, purified with a Qiaex II kit (Qiagen,
Valencia, Calif.), and then cloned into the TA cloning vector pCRII.
PCR was then performed on colonies containing recombinant plasmids
using primers which anneal to the vector flanking the cloning site
(EcoRI) to determine the sizes of the inserts.
In situ hybridization.
Rat lungs were cut into small pieces
and then immersed for 24 h in a fixative composed of 4%
formaldehyde and 1% glutaraldehyde. The tissues were washed with
phosphate-buffered saline (PBS) (pH 7.4) three times for 30 min each
and then dehydrated by being passed through a series of increasing
concentrations of ethanol. After replacement of the ethanol with
xylene, the tissue was embedded in paraffin. Five-micrometer sections
were cut with a microtome (Leitz, Rockleith, N.J.) and mounted on
ProbeOn Plus microscope slides (FisherBiotech, Pittsburgh, Pa.). Each
slide contained both immunosuppressed and P. carinii-infected rat lung sections.
0019-9567/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Down-Regulation of GATA-2 Transcription during
Pneumocystis carinii Infection
![]()
ABSTRACT
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
-33P]dATP, and 1 U of AmpliTaq (Perkin-Elmer, Foster
City, Calif.) at 94°C for 30 s, 42°C for 2 min, and 72°C for
30 s for 40 cycles. The labeled PCR products were electrophoresed
on 6% DNA sequencing gels and detected by autoradiography of the gels.
70°C for 1 h, the samples were
centrifuged at 16,000 × g for 15 min at 4°C. The
pellets were washed with 200 µl of cold 75% ethanol, dried, and
resuspended in 100 µl of diethyl pyrocarbonate-treated water
containing 1 µl of RNase inhibitor (RNasin) (20 U). The concentration
of RNA thus produced was determined by spectrophotometry, measuring the
absorbance at 260 nm.
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RESULTS |
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Approximately 50 differentially expressed bands were observed. Some bands were present only in the samples of P. carinii-infected rat lungs; these may represent expressed P. carinii genes or host genes that are turned on or up-regulated by P. carinii infection. There were also bands that were present in samples of Dex-suppressed and normal rats but not in P. carinii-infected rats; these bands may represent host genes that are turned off or down-regulated by P. carinii infection. Seven of the down-regulated bands were isolated, reamplified, and cloned from the differential display gel.
To confirm that these clones represent genes that are differentially
expressed, a Northern hybridization was performed. The inserts of these
clones were isolated, labeled with 32P, and used as probes
to react with RNA samples from Dex-suppressed and P. carinii-infected rat lungs. These two RNA samples (10 µg each)
were run side by side on an agarose gel in eight replicates. Each
replicate was separately transferred to a Nytran membrane. One of the
membranes was reacted with the
-actin gene probe to demonstrate that
the same amounts of RNA samples were loaded into each well. The other
membranes were each reacted with different probes. The
-actin gene
probe gave approximately the same intensity of hybridization signal
with both Dex-suppressed and P. carinii-infected RNA samples
(Fig. 1), indicating that approximately
equal amounts of RNA were loaded. A separate membrane was probed with
the
-actin gene probe because it was unknown whether there would be
interference from hybridization signals of other probes to mRNA of the
same length as
-actin.
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All of these probes gave a more intense hybridization signal with the RNA sample from Dex-suppressed rat lung cells than with that from P. carinii-infected rat lung cells (Fig. 1). This result indicates that the genes represented by these probes are down-regulated during P. carinii infection. The gene represented by A8II has the highest level of expression, followed by those represented by the C6I and T6II clones and then by A8I, A7IV, A8IV, and A8III. Probe A8II generated two bands that are very close in size (~1.8 and 1.5 kb). Probes C6I and T6II produced the same hybridization patterns, and the intensities of hybridized bands of P. carinii-infected samples are approximately one-fourth of those of noninfected cells. Probes A8IV and A8III also produced the same hybridization patterns; a weak band was seen in Dex-suppressed RNA samples and no band was seen in P. carinii-infected samples, suggesting that these two genes are expressed at a very low level in Dex-suppressed rats and are severely down-regulated in P. carinii-infected rats.
To identify these genes, the inserts of these clones were sequenced.
The sequences thus obtained were compared with all of the sequences in
GenBank using the BLAST-n search tool. The sequences of clones C6I and
T6II were found to be identical to each other and are 90% homologous
to that of the MM-1 gene (GenBank accession no. D89667). The sequences
of clones A8IV and A8III were also identical to each other and are 97%
homologous to that of the mouse GATA-2 transcription factor gene at the
3' noncoding region (Fig. 2). The
sequence of clone A8I was found to be 83% homologous to that of an
unidentified gene, KIA0026 (GenBank accession no. D14812). The
sequences of clones A8II and A7IV were found to be novel. These two
sequences have no significant homology with those of any of the genes
in the nucleotide sequence banks.
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Among the three known genes identified to be down-regulated during P. carinii infection, the GATA-2 gene is the most well characterized. The function of KIA0026 is unknown. MM1 was recently identified to be a c-Myc binding protein. GATA-2 is a transcription factor and regulates the development of hematopoietic cells. Therefore, a decision was made to further study the function of the GATA-2 gene in the lung. In situ hybridization using biotin-labeled sense and antisense GATA-2 riboprobes was performed to identify cells expressing the GATA-2 gene in the lung.
No hybridization signal was seen in any sections that reacted with the
sense riboprobe, indicating that no nonspecific hybridization occurred
in the reaction (Fig. 3). In sections of
Dex-suppressed rat lung, cells that showed positive hybridization
signals with the antisense GATA-2 probes were located in the
epithelium of bronchioles, interstitium, alveolar walls, and
alveoli (Fig. 3A). Ciliated bronchial epithelial cells were most
prominently stained, indicating high expression of the GATA-2
gene. The cells in the interstitium and alveolar walls that react with
the probe had the typical appearance of monocytes, with horseshoe or
uniform nuclei and a moderate amount of vacuolated cytoplasm. These
resident lung monocytes are commonly referred to as histiocytes. There was no hybridization signal seen in interstitial fibrocytes or endothelial cells in these sections. Cells in the alveoli that reacted
with the probe were large and had an amoeboid shape with shaggy cell
margins and phagocytic vacuoles in the cytoplasm, characteristic of
alveolar macrophages.
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In sections of P. carinii-infected lung, the alveolar spaces were filled with an amphophilic foamy amorphous exudate composed of cell debris and P. carinii organisms. The organisms were also seen in the lumen of some small bronchioles. The alveolar septa were wider than those of noninfected rats and contained more inflammatory cells such as neutrophils and lymphocytes. The numbers of bronchial epithelial cells that showed positive hybridization with the antisense GATA-2 probes were much fewer than those seen in noninfected rat lungs (Fig. 3B). The intensity of the brown color in hybridization-positive cells, including ciliated bronchial epithelial cells, monocytes, and alveolar macrophages, was reduced. The numbers of monocytes that reacted with the probes were also reduced.
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DISCUSSION |
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In this study, we have investigated differences in gene expression between noninfected and P. carinii-infected rat lungs. The expression of the GATA-2 gene was found to be down-regulated during P. carinii infection. This GATA-2 down regulation was first detected by mRNA differential display experiments. Identification of the gene was achieved by comparing the nucleotide sequence of the differential displayed product with sequences stored in GenBank (Fig. 2). Down-regulation of the GATA-2 gene was confirmed by Northern blot analysis. The GATA-2 gene in normal rat lung was found to be expressed at a very low level based on the intensity of the RNA band that hybridized with the probe. Its expression in P. carinii-infected lung is even lower, as no RNA band was found to react with the probe (Fig. 1). With in situ hybridization, alveolar macrophages, resident lung monocytes, and ciliated bronchial epithelial cells are found to express the GATA-2 gene in the lung (Fig. 3). The expression of the GATA-2 gene in these three types of cells in P. carinii-infected lungs is much lower than that in normal rat lung, confirming the results of Northern blot analyses.
GATA-2 is one of the six transcription factors of the GATA family that
have been identified. All members of the GATA family contain two copies
of zinc finger DNA binding motifs (14). The consensus
binding sequence of GATA transcription factors is (A/T)GATA(A/G) (19), which is present in the promoters or enhancers of many genes. GATA-2 plays a crucial role in the development of hematopoietic cells (27). It has been found to be expressed in erythroid
and early myeloid cells and regulates the expression of
-globin and erythropoietin genes (9, 16, 18). It has also been shown to
control the expression of the endothelin-1 gene (12), the endothelial nitric oxide synthase gene (30), and the gene
encoding the platelet and endothelial cell adhesion molecule-1
(12).
Down-regulation of GATA-2 in alveolar macrophages may have an impact on host defenses against P. carinii infection. In vitro, alveolar macrophages have been shown to be activated by the whole organism or the major surface glycoprotein of P. carinii to release inflammatory substances such as tumor necrosis factor alpha, prostaglandin E2, and leukotriene B4 (3, 8, 26). This activation is enhanced by vitronectin or fibronectin, which accumulates in the lung during P. carinii infection. Furthermore, alveolar macrophages from normal rat lung are able to bind, phagocytize, and degrade P. carinii (6, 13, 15, 28). However, alveolar macrophages appear to have decreased functional abilities during P. carinii infection. Using the SCID mouse model, Chen et al. (4) demonstrated that phagocytosis of P. carinii is not common. In addition, Hanano et al. (7) showed that activated alveolar macrophages are insufficient to resolve P. carinii infection. The mannose receptors of alveolar macrophages are found to be defective in AIDS patients with P. carinii pneumonia (11). It is possible that down-regulation of GATA-2 in alveolar macrophages renders them unable to phagocytose P. carinii. This hypothesis is consistent with the finding that phagocytosis of P. carinii is uncommon in heavily infected lungs.
We also found that GATA-2 is expressed in resident lung monocytes and that this expression is also decreased during P. carinii infection. Resident lung monocytes are interstitial monocytes in the lung with the potential of becoming alveolar macrophages. Since GATA-2 plays a key role in the development of many types of tissues, down-regulation of the GATA-2 gene in resident lung monocytes may prevent them from becoming alveolar macrophages. Down-regulation of GATA-2 in resident lung monocytes and macrophages may be one of the mechanisms by which P. carinii ensures its own survival. Studies are being conducted to test these hypotheses.
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FOOTNOTES |
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* Corresponding author. Mailing address: Department of Pathology and Laboratory Medicine, Indiana University School of Medicine, 1120 South Dr., FH 419, Indianapolis, IN 46202-5113. Phone: (317) 274-2596. Fax: (317) 278-0643. E-mail: chlee{at}iupui.edu.
Editor: W. A. Petri Jr.
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