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Infection and Immunity, November 2001, p. 6931-6941, Vol. 69, No. 11
0019-9567/01/$04.00+0 DOI: 10.1128/IAI.69.11.6931-6941.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Cloning of the Streptococcus mutans Gene
Encoding Glucan Binding Protein B and Analysis of Genetic Diversity and
Protein Production in Clinical Isolates
Renata O.
Mattos-Graner,1
Song
Jin,1
William F.
King,1
Tsute
Chen,2
Daniel J.
Smith,1 and
Margaret
J.
Duncan2,*
Department of
Immunology1 and Department of Molecular
Genetics,2 The Forsyth Institute, Boston,
Massachusetts 02115
Received 6 June 2001/Returned for modification 23 July
2001/Accepted 22 August 2001
 |
ABSTRACT |
Streptococcus mutans, the primary etiological agent of
dental caries, produces several activities that promote its
accumulation within the dental biofilm. These include
glucosyltransferases, their glucan products, and proteins that bind
glucan. At least three glucan binding proteins have been identified,
and GbpB, the protein characterized in this study, appears to be novel. The gbpB gene was cloned and the predicted protein sequence
contained several unusual features and shared extensive homology with a putative peptidoglycan hydrolase from group B streptococcus.
Examination of gbpB genes from clinical isolates of
S. mutans revealed that DNA polymorphisms, and hence amino
acid changes, were limited to the central region of the gene,
suggesting functional conservation within the amino and carboxy termini
of the protein. The GbpB produced by clinical isolates and laboratory
strains showed various distributions between cells and culture medium,
and amounts of protein produced by individual strains correlated
positively with their ability to grow as biofilms in an in vitro assay.
 |
INTRODUCTION |
Dental caries is a transmissible
infectious disease in which mutans streptococci (MS) play the major
role. Streptococcus mutans, the primary etiological agent,
possesses several virulence factors that allow it to accumulate within
the dental biofilm and to produce and tolerate the acids that cause
carious lesions. Biofilm development occurs in two distinct phases;
during the first, bacterial surface proteins interact with host or
bacterial products adsorbed on the tooth surface. In the second phase,
a biofilm forms as bacteria accumulate by aggregation with the same or
other species and produce an extracellular polysaccharide matrix
(13). Bacterial components associated with the
accumulation phase of MS include glucosyltransferases, their glucan
products, and proteins that bind glucan. At least three S. mutans glucan binding proteins (Gbp) have been identified: GbpA
(23), GbpB (26), and GbpC (24).
After cloning and sequencing, the gbpA gene product
was found to share homology with the putative glucan binding domain of
glucosyltransferase (2) and the gbpA gene was found to encode a constitutively expressed secreted
protein (1, 2). Cell surface-associated GbpC was related
to the Spa family of streptococcal proteins and was expressed only
during conditions of stress (24). GbpB was immunologically
distinct from other Gbps expressed by S. mutans and
Streptococcus sobrinus and also differed in size and
purification properties (26).
For successful colonization of the oral cavity, MS need nonshedding
tooth surfaces; thus, the period of highest colonization occurs from
approximately 18 to 30 months of age, coinciding with the eruption of
primary molars (3, 12). At this age, the mucosal immune
system is mature enough to respond to immune interventions against
infecting MS (27) and MS colonization of young children results in a measurable immunoglobulin A response to GbpB
(27). Furthermore, in experimental infection of rats,
systemic or mucosal immunization with GbpB induced protective immunity
to dental caries, indicating that GbpB may be an important target for
the development of caries vaccines (29). Preliminary
studies have shown that GbpB is expressed in all laboratory and
clinical S. mutans strains tested so far (D. J. Smith,
W. F. King, and M. A. Taubman, J. Dent. Res.
74:123, 1995). However, the biological function of GbpB and
its role in the virulence of S. mutans are still unclear. The cloning and sequencing of gbpB were briefly reported
previously (S. Jin, M. J. Duncan, M. A. Taubman, and D. J. Smith, J. Dent. Res. 79:224, 2000). The protein shows
homology to a putative peptidoglycan hydrolase from group B
streptococcus, suggesting that GbpB plays a role in peptidoglycan
biosynthesis. In this study, we examined the genotypic and protein
diversity of gbpB in clinical isolates of S. mutans. We also determined the production and localization of GbpB
protein in clinical isolates and laboratory strains and amounts of
protein produced correlated positively with biofilm growth in an in
vitro assay.
 |
MATERIALS AND METHODS |
Bacterial strains and growth conditions.
S.
mutans strain SJ32 was described previously (26, 27).
Additional S. mutans strains were obtained from a subset of
children derived from a previously described larger population
(16, 17). Clinical strains were genotyped by arbitrarily
primed PCR (15) and included 44 distinct S. mutans amplitypes and an S. sobrinus strain. Laboratory
strains of S. mutans strains included in this study were
UA130, UA159, T8 (kindly provided by P. W. Caufield, University of
Alabama), and GS5 (kindly provided by H. K. Kuramitsu, State
University of New York at Buffalo). MS strains were grown in either
Todd Hewitt broth (THB) or brain heart infusion broth or plates and in
chemically defined medium (COM) (31) under anaerobic
conditions, 10% H2-10% CO2-80%
N2. Escherichia coli strains DH5
and BL21
(Novagen, Madison, Wis.) were grown in Luria Bertani (LB) broth or
plates, and ampicillin (100 µg/ml) was used to select and maintain
recombinant plasmids. Unless stated otherwise, all chemicals were
obtained from Sigma Chemical Co., St. Louis, Mo.
DNA isolation.
S. mutans chromosomal DNA was
isolated using a MasterPure DNA purification kit from Epicentre
Technologies (Madison, Wis.). Recombinant plasmid DNA was isolated
using a Perfectprep kit from Eppendorf Scientific Inc. (Westbury,
N.Y.).
S. mutans library construction.
Chromosomal DNA
was partially digested with Sau3AI, and 2.5- to 5.0-kb
fragments were gel purified using a QIAquick gel extraction kit (QIAGEN
Inc., Valencia, Calif.). Fragments were ligated to BamHI-digested, calf intestinal phosphatase-treated pUC19
and used to transform competent E. coli DH5
cells.
Ampicillin-resistant recombinant clones were selected on plates of LB
and ampicillin and containing X-Gal
(5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside) and
IPTG (isopropyl-
-D-thiogalactopyranoside) to screen for
insert-containing clones.
Southern hybridization.
Hybridization conditions and signal
development were as recommended in the Enhanced Chemiluminescence gene
detection system (Amersham-Pharmacia, Piscataway, N.J.).
Cloning of gbpB.
GbpB was purified by anion
exchange chromatography in the presence of urea as previously described
(28). Peptide sequences were obtained at the Molecular
Biology Core Facilities, Dana-Farber Cancer Institute, Boston, Mass.,
and the Harvard Microchemistry Facility, Harvard University, Cambridge,
Mass., by trypsin digestion, high-performance liquid chromatography,
matrix-assisted laser desorption ionization-time of flight (MALDI-TOF)
(mass spectrometry), and Edman degradation. PCR primers derived from
these peptides and used to isolate gbpB are described in
Table 1. Reaction mixture volumes were 50 to 100 µl and contained 10 mM Tris-HCl (pH 8.3), 50 mM KCl, 2.5 mM
MgCl2, 50 µM deoxynucleoside triphosphates, approximately
0.5 µM primers, 0.1 to 0.5 µg of template, and 2.5 U of AmpliTaq
Gold DNA polymerase (Perkin-Elmer, Branchburg, N.J.). Thermal
conditions were as follows: 10 min at 95°C; 6 cycles of 30 s at
95°C, 30 s at 40°C, and 1.5 min at 72°C with 5-s increments per cycle; 30 cycles of 30 s at 95°C, 30 s at 46°C, and 2 min at 72°C with 5-s increments per cycle; and 5 min at 72°C. PCR and specific sequencing primers were obtained from The Midland Certified Reagent Company (Midland, Tex). A Peltier Thermal Cycler model PTC-200 (MJ Research, Cambridge, Mass.) was used for PCR. Sequencing was carried out with either dRhodamine or Big Dye Terminator cycle sequencing kits (Perkin-Elmer, Foster City, Calif.) using a PE
9700 Thermocycler. Reactions were run on Perkin-Elmer ABI 377 Sequencer.
Expression of gbpB in E. coli
The
gbpB gene from S. mutans SJ32 genomic DNA was
amplified using a 5' PCR primer with an NcoI restriction
enzyme recognition site for insertion of the amplicon into an
expression vector and for sequence coding for the first seven amino
acids of the mature GbpB protein. The 3' primer contained an
XhoI restriction site and sequence coding for the last eight
amino acids of GbpB, but excluding the stop codon. The 1,212-kb PCR
product was ligated to the NcoI-XhoI-digested
vector pET22B and then transformed into E. coli BL21(DE3).
GbpB expression in E. coli was induced with IPTG, protein
extraction, and purification of the His-tag protein on nickel columns
as described by the supplier (Novagen).
RFLP analysis of gbpB.
gbpB genotypes
were detected by restriction fragment length polymorphism (RFLP)
analysis of PCR-amplified gbpB genes from 44 amplitypes of
S. mutans clinical isolates. Laboratory strains SJ32, T8,
UA130, UA159, and GS5 were also included in the analysis. The
gbpB DNA sequence from SJ32 was aligned with that of strain UA159 (S. mutans genome database
[http://www.genome.ou.edu/smutans.html]), and from the latter,
primers were designed to amplify gbpB plus 162 bp of the
upstream and 195 bp of the downstream sequences flanking the open
reading frame (ORF) of GbpB (Table 1).
Measurement of GbpB in culture supernatants and cell
extracts.
After overnight growth in CDM, bacterial
suspensions were adjusted to the same optical density
(A550) so that the same size inoculum was added
to fresh CDM (4 ml) containing 10 µM hydrochloride 4-(2-aminoethyl)-benzolsulfonylfluoride (AEBSF) from Roche Diagnostics (Indianapolis, Ind.) to inhibit protease activity. After growth for
18 h, cells were pelleted from 2 ml of culture, and the
supernatant was filtered through 0.22-µm-pore-size Spin-X filter
membranes (Costar, New York, N.Y.) and immediately frozen at
70°C.
Cell-associated GbpB was extracted with urea as previously described
(8). For direct comparisons, culture supernatants and urea
extracts were dialyzed overnight at 4°C against 0.02 M sodium
phosphate buffer (PB) (pH 6.5) with 5 mM
-mercaptoethanol. All
samples were stored at
70°C.
GbpB in culture supernatants and cell extracts was measured by immuno
dot blotting. Nitrocellulose membranes (Bio-Rad, Foster
City, Calif.)
were washed with PB and applied to a dot blot apparatus
(Bio-Rad). Two
hundred microliters of PB was applied to each well
and dried under
vacuum, followed by 50 µl of sample diluted 1:2
in PB, and was
allowed to drain. An additional 200 µl of PB was
applied per well and
dried under vacuum. Samples of serially diluted
purified GbpB were
included as standards. Membranes were blocked
for 1.5 h in a
mixture of 100 mM Tris-HCl, 2.5 mM NaCl (pH 7.5),
10% skim milk, and
0.2% NaN
3, followed by incubation with rat
polyclonal
antiserum (
26) to GbpB (1:700 dilution) for 2 h at
room temperature. As negative controls, samples were incubated
with
preimmune antibody. Following incubation with primary or
preimmune
antibody, membranes were washed three times for 5 min
with 100 mM Tris
buffer containing 0.25% Tween (TBST), pH 7.5.
Incubation with the
secondary antibody, fluorescein-conjugated
rabbit anti-rat
immunoglobulin G (Zymed, San Francisco, Calif.)
was at room temperature
for 2 h in the dark. Membranes were washed
twice with TBST, then
three times with 100 mM Tris buffer, pH
7.5. Signals were detected with
a fluorescence reader (Storm 840;
Molecular Dynamics, Sunnyvale,
Calif.) and converted to digital
images, and dot blot intensities were
quantified with ImageQuant
software (Molecular Dynamics). Samples of
all strains were blotted
to the same membrane for comparison, and the
immunoassay was repeated
at least twice. The amounts of GbpB in culture
fluids and cell
extracts were quantified by comparison with serial
dilutions of
purified GbpB of known concentration within a linear
range. The
same samples were also tested as described above for amounts
of
GbpA and total glucosyltransferases using polyclonal antibodies
against these proteins at serum protein concentrations of 1:200
and
1:700,
respectively.
Biofilm formation in microtiter plates.
Biofilm formation in
microtiter plates was assayed by the method described by O'Toole and
Kolter (21). An aliquot from a 5-ml overnight THB culture
was diluted 1:100 in fresh THB, and 200 ml was transferred to sterile
polystyrene U-bottom microtiter plates (Dynatech Lab, Chantilly, Va.).
Plates were incubated anaerobically for 18 h, and biofilm growth
was revealed and quantified by staining with crystal violet
(21). Crystal violet absorbance was determined with a
plate reader at 575 nm (Dynatech, Winooski, Vt.). The absorbance (A550) of planktonic cultures grown under the
same conditions was measured to monitor growth. Biofilm formation for
all strains was measured in triplicate plates. The laboratory strains
S. mutans UA130 and SJ32 were also included in the same experiments.
Statistical analysis.
Pearson correlation analyses were used
to evaluate associations between production of GbpB, biofilm growth,
and planktonic growth of cultures. To avoid bias because of GbpB
production by different S. mutans amplitypes, only one of
each amplitype identified per child was used after random selection.
Nucleotide sequence accession numbers.
The nucleotide
sequence of the gbpB gene from S. mutans strain
SJ32 was assigned GenBank accession number AY046410; from strain 3VF4,
AY046411; from 15JP2, AY046412; from 3SN1, AY046413; and from 5SM3,
AY046414.
 |
RESULTS |
Cloning of gbpB.
Cloning was carried out during
the beginning stages of the S. mutans genome project, and
before gbpB-related sequences were available. Therefore,
mature GbpB was purified from culture supernatants of S. mutans SJ32 and the N-terminal and two internal peptide sequences
were determined after tryptic digestion, MALDI-TOF (mass spectrometry),
and cycle sequencing. The N-terminal sequences of peptide 1 (DDF?AQIASCD[A]KI[V][N][T]) and internal peptides 2 (GWFNPGSVSYIYP[L]) and 3 (LEAQSATLGQQIQTLSSSK) were obtained. However, the positions of 2 and 3 relative to each other were unknown,
since at that time there were no homologues in GenBank, nor did they
have identity with sequences released from the genome sequencing
project. Degenerate oligonucleotide primers 1 and 3 (Table 1) were
designed from peptides 1 and 3, respectively (Fig. 1A), since peptide 2 was unsuitable for primer design. Southern blot analysis showed that
primer 1, designed from N-terminal peptide 1, hybridized to single
fragments of restriction enzyme-digested S. mutans SJ32
chromosomal DNA (data not shown), indicating that at least the 5'
terminus of the gene existed in single copy in the genome. The steps
involved in cloning gbpB are depicted in Fig. 1. The
gbpB gene was subcloned into the pET22B expression vector
and transformed into E. coli BL23. Following induction with
IPTG, cell-associated protein extracts and culture supernatants contained proteins that reacted with polyclonal antibody to purified GbpB (Fig. 1G), providing evidence that we had cloned the correct protein.

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FIG. 1.
Strategy for cloning gbpB from S. mutans SJ32. (A) From S. mutans SJ32 template DNA, PCR
primers 1 and 3 yielded a 180-bp fragment with 100% DNA and amino acid
identity to GenBank accession (Acc.) no. 4098503, a partially cloned
but unknown S. mutans gene. Peptides 1 and 3 were found in
the partial putative ORF; thus, peptide order within GbpB was
1-3-2. N-term, N terminus. (B) Specific 5' and 3' primers designed from
accession no. 4098503 generated a 691-bp amplicon. (C) The
purified amplicon was used to probe an S. mutans SJ32
genomic library for clones containing gbpB-related
sequences. A single hybridizing clone contained a 3.5-kb insert with
the 5' promoter region, a 300-amino-acid (aa) ORF comprising a signal
sequence, the N terminus of mature GbpB, peptide 3, and 89 amino acids
more than the gene fragment reported in GenBank accession no. 4098503. The ORF did not contain peptide 2 or a stop codon. (D) To obtain the 3'
region, the PCR primer specific to the 5' sequence of GenBank accession
no. 4098503 was used with a 3' specific primer designed after BLAST
searching the S. mutans genome database with peptide 2. A
765-bp amplicon was aligned with already obtained sequences, but still
without the stop codon. (E) A randomly primed PCR strategy (4) was used to generate
the C terminus of the protein and the 3' noncoding region. First-round
PCR products were generated with specific primer 1 derived from the
765-bp amplicon and random primer 2 that contained a 3'
EcoRV sequence. The second round 5' specific primer 3 was
again derived from sequences within the 765-bp amplicon, and the 3'
random primer 4 retained the EcoRV sequence tag. A 1,054-bp
fragment was generated that contained the C terminus, the stop codon,
and 3' downstream untranslated sequence. (F) All sequences were
aligned, and PCR primers were designed for the sequence 100 bp up- and
downstream of the promoter and stop codons to generate the complete
gene from SJ32. (G) GbpB expressed in E. coli reacted with
antibody to the native protein. Shown is a Western blot of GbpB
expressed in E. coli. Lane 1, induced GbpB; lane 2, induced
vector alone; lane 3, purified GbpB.
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DNA and protein analysis of GbpB.
The DNA sequence of
gbpB together with the predicted coding sequence is shown in
Fig. 2. A putative Pribnow box,
T97AATATA103, was found next to the predicted
transcription start site at A103 (Promoter Prediction by
Neural Network
[http://www.hgc.lbl.gov.gov/projects/promoter.html]) (10; M. G. Reese, N. L. Harris, and F. H. Eeckman, Proc. 1996 Pacific
Symp. Biocomputing, 1996), and a ribosome binding site (147AGGA150) was identified 12 bp 5' to the ATG
start codon. The coding sequence was 1,295 bp in length, and following
the TAA termination codon, a hairpin loop was detected
(1468A-1499T) with
40.3 kcal of free energy
per ml. Therefore, it appears that gbpB is an independently
regulated gene.

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FIG. 2.
DNA and encoded protein sequence of gbpB from
S. mutans SJ32. The putative Pribnow box in the 5'
untranslated sequence is underlined, and the predicted transcription
start is shown in bold. The ribosome binding site is shown in bold and
underlined. Within the protein sequence the leucine zipper is
underlined.
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The open reading frame encoded a protein of 431 amino acids with a
molecular mass of 44.58 kDa. A 27-amino-acid signal peptide
was
predicted by SignalP (
20), and the cleavage site confirmed
the N-terminal sequence of the purified mature secreted protein.
Thus,
the mature form of the polypeptide is ca. 41.3 kDa, approximating
the
size estimated by mass spectrometry. The protein was glutamine
and
alanine rich, 13.9 and 21.4%, respectively, by composition.
There was
a leucine zipper motif,
LQTQQAE
LQAENQR
LEAQSAT
LGQQIQT
L,
within the N-terminal half of the protein. GbpB did not possess
the C-terminal cell wall anchor motif LPXTG (
18),
consistent
with it being found in culture fluids as well as cell
associated;
however, the C-terminal region contained hydrophobic
sequences
(
11) also found in cell wall targeted or
secreted proteins in
gram-positive bacteria (
6).
Apart from the leucine zipper sequence, there were no amino acid motifs
within GbpB that suggested putative biological function.
However, nine
stress-responsive genes were recently identified
in
S. mutans by differential display reverse transcription PCR
(
5). One of these, GSP-781, was activated by acid stress,
high
osmolarity, and temperature and shared 100% amino acid identity
with GbpB. Further insight into a potential function for GbpB
was
provided by the high homology throughout its length (60% complete
and
69% positive identities) to PcsB, a recently identified secreted
protein in group B streptococcus (
22) (Fig.
3). Both PcsB and
GbpB show some homology
to P45, a protein from
Listeria monocytogenes that was
identified as a peptidoglycan hydrolase (
25). These
enzymes play important roles in peptidoglycan cycling, cell wall
synthesis, and daughter cell separation. Although hydrolytic activity
could not be demonstrated with purified PcsB, electron micrographs
showed that
pcsB knockout mutant cells were larger than
wild-type
cells, with abnormal cell shape and division septa,
suggesting
that PcsB played a role in cell wall synthesis or division
(
22).

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FIG. 3.
Alignment of deduced amino acid sequences of GbpB and
PcsB precursor proteins. The ClustalW multiple alignment program
(http://npsa-pbil.ibcp.fr/cgi-bin/align_clustalw.pl) was used to align
amino acids. Identical and similar amino acids are marked at the bottom
as asterisks (strong similarity) and dots (weak similarity),
respectively. A conserved cysteine residue at the C-terminal region is
observed at position 350.
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Comparative genomic analysis of gbpB region.
Evidence from comparative genomics also suggests that GbpB is involved
in cell wall biology. Analysis of the S. mutans genome database (http://www.genome.ou.edu) revealed that two genes upstream from and in the same orientation as gbpB, encoded homologues
of cell shape-determining proteins from other gram-positive bacteria. These ORFs contained approximately 50% amino acid similarity to cell
shape-determining proteins MreC and MreD from Streptococcus pneumoniae, Lactococcus lactis, Enterococcus faecalis,
and Enterococcus faecium (Fig.
4). Downstream from gbpB,
other genes were identified that encoded homologues of proteins from
gram-positive organisms (L. lactis, Bacillus
subtilis, L. monocytogenes, Streptococus gordonii, and Streptococcus sanguis) that were involved
in amino acid and lipid synthesis, ATP-dependent transport system, DNA repair, and competence. The gene immediately downstream from
pcsB in group B streptococci encoded a polypeptide with high
similarity to phosphoribosyl pyrophosphate synthetase
(23), and the same locus was found immediately downstream
from gbpB. Thus, in several gram-positive bacteria,
including S. mutans, there appears to be conservation of
genomic structure suggesting a functional relationship between genes
involved in cell shape and cell wall maintenance.

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FIG. 4.
Comparative genomics of the S. mutans gbpB
locus. Genes flanking gbpB were examined for homologies in
gram-positive bacteria. ORFs 1 and 2 showed homology to MreC and MreD,
described as cell shape-determining proteins. GbpB shares homology with
Usp45 from S. pneumoniae and L. lactis and to
SagA from E. faecalis and E. faecium, which are
secreted proteins related to peptidoglycan hydrolases from
gram-positive bacteria. ORFs 4 and 5 were variable with regard to
protein function. Accession numbers were obtained from the GenBank and
The Institute for Genomic Research (*) databases.
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RFLP analysis of the gbpB gene.
The
gbpB gene was obtained by PCR from 44 amplitypes of S. mutans strains (15), and a fragment of the predicted
size, 1,653 kb, was obtained from all strains (data not shown). Figure
5A shows the predicted restriction map of
gbpB, and endonucleases PvuII and
Sau3AI were selected as the most informative for RFLP analysis because of the higher number of cutting sites and yield of
fragments that could be well separated by electrophoresis. By
PvuII digestion, the gbpB genes could be divided
into three classes, and the most prevalent class, represented by strain
5SM3 in Fig. 5B, was found in 63.7% of the strains, including SJ32, from which gbpB was originally sequenced, as well as
laboratory strains T8 and UA130. Also, 34% of the amplitypes showed a
second pattern, represented by strain 3VF4 (Fig. 5B) and strains UA159 and GS5. Sau3AI-generated polymorphisms were less
informative since only four amplitypes (9.1%) showed a different
pattern, as shown with strain 3SN1 in Fig. 5C.

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FIG. 5.
RFLP analysis of gbpB from clinical isolates
of S. mutans. (A) Restriction map of 1,653-bp amplicon that
included 162 bp upstream and 195 bp downstream flanking ORF of GbpB
from UA159. (B) RFLP patterns with restriction enzyme PvuII.
(C) Restriction patterns obtained with Sau3AI. Lanes M,
molecular size markers.
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A representative from each of the
PvuII and
Sau3AI classes was sequenced to identify base changes. A
total of 18 changes were
found, of which 17 were point mutations. One
class, represented
by 15JP2 (Fig.
6),
contained a point mutation in the DNA sequence
encoding the signal
peptide that resulted in a conservative residue
change (valine to
isoleucine) three residues upstream from the
signal peptidase cleavage
site. The strain still secreted GbpB
(see below), so it appears
unlikely that the mutation affects
processing. Another class,
represented by strains 3SN1 and 15JP2,
had a 3-bp insertion that coded
for an extra asparagine residue
at position 264. This and the remaining
point mutations occurred
within a relatively defined region (456 to 972 bp) corresponding
to the central region of the protein (Fig.
5). Eight
mutations
were silent, another four resulted in conservative amino acid
changes, and five represented changes to amino acids of different
classes.

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FIG. 6.
Polymorphisms of gbpB in different S. mutans strains lead to changes in protein sequence. Out of 18 mutations identified, 9 caused changes in the protein level
(highlighted bars) and 5 represented changes to residues of
different classes.
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Production of GbpB by clinical isolates of S. mutans
The amounts of GbpB measured in culture supernatants
from 76 clinical isolates were found to be highly variable. Values were normalized to microgram of protein/A550 of
culture, and the mean (± standard deviation [SD]) production level
was 5.58 ± 0.167 µg/ml of culture supernatant. The
A550 of cultures did not vary significantly
(mean, 0.147; SD, 0.116); thus, there was no correlation between growth
and GbpB production (Pearson, r = 0.05, P = 0.667). Strain 20A3 produced the largest amounts of GbpB in the
culture supernatant (8.52 µg/ml), and strain 8VS3 produced the
smallest amounts (1.16 µg/ml). Twenty isolates with the widest
spectrum of GbpB protein levels, including S. mutans
laboratory strains UA130 and SJ32 and S. sobrinus as a
negative control, were selected for further analysis of the
distribution of GbpB between cells and supernatants (Fig.
7). It then became apparent that levels of GbpB in culture supernatants alone did not reflect total levels since in some strains a large amount of protein remained cell associated, e.g., strain 8VS3. On the other hand, 20A3 contained little
cell-associated protein and other strains produced small amounts of
GbpB in both culture supernatants and cell extracts, e.g., 4JP2. Out of
19 S. mutans clinical strains analyzed, eight (42.1%)
retained most of the GbpB they produced in a cell-associated form,
e.g., 3A1 and 5SM3, while in 11 strains (57.9%), most of the protein
was secreted into the culture supernatants. Among the laboratory
strains, most of the GbpB produced by SJ32 was found in culture
supernatants, while for UA130, most of the protein was in a
cell-associated form. As expected, S. sobrinus strain 3SSA1
did not produce GbpB. The patterns of GbpB distribution between cell
surface and culture supernatants were reproducible, and in similar
control experiments, GbpA was extracted from 20 strains and the
majority of this protein was in supernatants and was not cell
associated (data not shown). Thus, the protein localization patterns
appear to be intrinsic to GbpB. However, different amplitypes of
S. mutans with the same gbpB RFLP pattern
differed in GbpB distribution (e.g., 5SM3 and SJ32); thus, other
factors influence GbpB localization.

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FIG. 7.
Distribution of GbpB in culture supernatants and cells
of 22 MS strains. Strain 3SSA1 is S. sobrinus, a negative
control. Shaded bars, amounts of protein measured in the culture
supernatants; solid bars, GbpB obtained after urea extraction of
cells.
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Correlation between biofilm formation and GbpB production.
S. mutans strains were compared for their ability to form
biofilms in microtiter plates as measured by crystal violet staining (21). Figure 8 illustrates
the differences observed in biofilm formation of a subset of clinical
isolates. The mean A575 of crystal violet-stained biofilms varied from 0.09 (SD, 0.03) to 0.58 (SD, 0.01),
indicating a high level of variability in biofilm growth between
strains, although values for planktonic growth were very similar (Fig.
8). The amounts of GbpB in culture supernatants and biofilm growth were
very similar when isolates of the same S. mutans amplitype
were compared (Fig. 8). In addition, strains in which most of the GbpB
was cell associated also grew well as biofilms, as observed for strains
8ID3, 5SM3, and 8VS3. Within the 44 clinical amplitypes, there was a
significantly positive relationship between the amounts of GbpB present
in culture supernatants and the level of biofilm growth (Pearson
correlation, r = 0.315, P < 0.05; Fig.
9). However, there was no significant
relationship between biofilm formation and the amount of either GbpA
(Pearson correlation, r = 0.101; P = 0.512) or glucosyltransferases (Pearson correlation, r = 0.005; P = 0.976) that were quantified in the same samples by immuno dot blot analysis (Fig. 9). There was no significant association between amounts of GbpB in culture supernatant with planktonic growth (Pearson correlation, r = 0.24;
P = 0.114), nor was biofilm growth related to that of
planktonic cultures (Pearson correlation, r =
0.146,
P = 0.344), although variability in planktonic growth
was much lower than that in biofilms. Even though only 21 S. mutans strains were analyzed for GbpB distribution, a positive
relationship was identified between amounts of cell-associated GbpB and
biofilm formation (Pearson correlation, r = 0.45,
P < 0.05, n = 21).

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|
FIG. 8.
Biofilm formation, planktonic growth, and GbpB
production in clinical strains of S. mutans. Strains within
vertical lines were isolated from the same child. One child (10ST) was
colonized by two different amplitypes: one represented by isolates
10ST1 and 10ST4 and the other by isolates 10ST2 and 10ST3. In all other
samples, one amplitype per child was identified. The lower panels show
the amounts of GbpB present in culture supernatants that were
quantified by immuno dot blot analysis.
|
|

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|
FIG. 9.
(A) A positive relationship was detected between amounts
of GbpB present in culture supernatants and biofilm formation among the
44 amplitypes of S. mutans. No significant associations were
detected between amounts of GpbA (B) and glucosyl transferases (GTF)
(C) and biofilm growth in the same strains.
|
|
 |
DISCUSSION |
Dental caries is a biofilm-dependent infectious disease in which
MS are the major pathogenic bacteria. However, the molecular mechanisms
of MS participation in biofilm development and maintenance are not
completely understood. Accumulation of MS depends on the production of
an extracellular polysaccharide matrix of water-insoluble glucans
(30) that also modifies the physicochemical, and hence cariogenic, properties of dental plaque (34). Glucans are
synthesized exclusively from sucrose by glucosyltransferases, a group
of extracellular enzymes. Glucan binding proteins also promote
bacterial aggregation, and although three different Gbps, A to C, have
been characterized so far (23, 24, 26), the mechanisms of
attachment between glucans and the bacterial cell surface are unknown.
In this study, we cloned gbpB from SJ32, the S. mutans strain from which the protein was first identified
(26). Sequencing of gbpB confirmed our previous
immunological results that the protein was novel and had no homology to
other Gbps (26). A 27-amino-acid signal peptide was
predicted immediately followed by the sequence encoding the N terminus
of the purified, secreted mature protein. Apart from its unusual
alanine-and glutamine-rich amino acid composition, an interesting
feature was that the protein contained heptad motifs characteristic of
leucine zippers, and because GbpB is found in culture medium or on the
cell surface, we presume this sequence is involved in interactions with
other proteins. RFLP analysis of gbpB from 44 S. mutans amplitypes revealed that most sequence changes were
clustered in the central region of the protein, suggesting functional
conservation of sequences within the N- and C-terminal domains. Recent
results indicate that the N terminus is immunologically active
(unpublished data) and may possess the protective epitopes associated
with the native molecule (29).
Although sequences with partial homology to GbpB were found in the
GenBank database, there were no suggestions as to function, apart from
the ability to bind glucan. Recently, a differential display
reverse transcription-PCR screen for S. mutans
stress-responsive genes identified a gene with complete identity to
gbpB (5). Expression increased under conditions
of high osmolarity and temperature, and it was speculated that the
encoded protein might be a structural component of the cell wall or
membrane. More significantly with regard to GbpB function, a protein
designated PcsB was recently identified in group B streptococcus
(22) and was shown to have good homology to GbpB (Fig. 3).
Generating a pcsB mutant proved difficult, and by using
osmotically protective conditions for both transformation and the
subsequent growth of candidates, one mutant was obtained. In addition
to osmotic sensitivity, the mutant grew slowly, was hypersensitive to
several antibiotics, and showed abnormal septum formation during
growth. From these characteristics, together with some homology to a
peptidoglycan hydrolase from L. monocytogenes, it was
concluded that PcsB was involved in wall separation during cell
division. Database analyses indicated that PcsB-like proteins were
present in several gram-positive bacteria; these proteins included P45
of L. monocytogenes, SagA from E. faecium and
E. faecalis, and Usp45 from Streptococcus
pneumoniae and L. lactis (7, 32, 33). GbpB
homologues are preceded by two ORFs that code for cell
shape-determining proteins (Fig. 4). As with GbpB and PcsB, these
proteins were both secreted and cell associated and contained a
conserved cysteine residue in the C-terminal domain that was necessary
for peptidoglycan hydrolytic activity (35). We observed
polymorphic forms of GbpB in clinical isolates of S. mutans;
however, most of the changes were clustered in the central region of
the protein (Fig. 6) while the N- and C-terminal regions were
conserved, suggesting functional roles. Because of the close homology
of GbpB to PcsB, and in turn to the other proteins with sequence
similarities that include the conserved cysteine active site residue,
we hypothesize that GbpB has a similar function in peptidoglycan
biosynthesis. To test this hypothesis, we attempted to isolate
gbpB mutants in several strains using different integrating
constructs. Inactivation of gbpB by simple Campbell-like
integration of a suicide vector yielded viable mutants containing
multiple and deleted versions of gbpB, as indicated by PCR
and sequencing analysis (R. O. Mattos-Graner et al., unpublished
data). Scanning electron micrographs of one class of slow-growing
mutants showed clumps of enlarged cells instead of the chains of cells
observed with the parent strain, a growth phenotype similar to that of
pcsB mutants (22). Thus, although
glucan-binding properties were originally ascribed to GbpB, our results
to date indicate that the protein plays other roles in the biology of
S. mutans.
GbpB was previously described as a secreted protein in several
laboratory strains of S. mutans (D. J. Smith et al., J. Dent. Res), however, we observed large variations in the amounts of GbpB secreted in the culture supernatants of 74 clinical isolates of
S. mutans. In the majority of clinical isolates, most of the GbpB was secreted into culture medium, but in some amplitypes the
majority of the protein remained cell associated (Fig. 7). Unlike GbpC,
GbpB does not possess the C-terminal cell wall anchor motif, LPXTG,
found in several surface proteins of gram-positive bacteria
(18). However, this cell-sorting signal is not contained in all surface proteins of gram-positive organisms (19)
and was not present in P45 from L. monocytogenes
(25).
The amounts of GbpB secreted by strains of the same amplitype were very
similar, suggesting that distribution of the protein between cells and
culture medium is intrinsic to specific clones of S. mutans.
Different genotypes, even when isolated from the same host, showed
different amounts of secreted GbpB, as exemplified by strains 10ST1 and
10ST4 (Fig. 8), which have the same amplitype and secrete large amounts
of GbpB, and strains 10ST2 and 10ST3, which were isolated from the same
child but have a different DNA fingerprint and secrete less GbpB. Since
GbpB may be involved in cell wall formation, it would be interesting to
determine the response of each amplitype to high osmolarity,
temperature, pH, and antibiotic exposure.
In this study, a large number of S. mutans clinical isolates
were examined for the ability to form biofilms in low-sucrose medium
(THB) (9) using an in vitro assay that was previously used
to screen for biofilm-defective mutants in both gram-negative and
gram-positive bacteria (14, 21). Despite high variability between isolates, a significant finding was a positive correlation between the ability of strains to grow as biofilms and GbpB production. Even strains in which a large proportion of the protein remained cell
associated showed good growth in biofilms. That no correlations were
observed between production of GbpA or glucosyltransferases and biofilm
formation also underscores the importance of GbpB in this mode of
growth (Fig. 9). However, for several strains, the level of secreted
GbpB did not correlate with biofilm growth, a predictable finding since
many unknown factors, beside GbpB, are involved in the complex process
of biofilm formation. Since the virulence of S. mutans is
directly related to its ability to colonize tooth surfaces and
accumulate in the dental biofilm, it is important to define a function
for GbpB and its role in biofilm formation. Given the extent of
homology between GbpB and PscB from group B streptococcus, one
hypothesis is that GbpB is involved in cell wall formation. Several
biofilm-defective mutants of S. gordonii Challis had
disruptions in genes involved in peptidoglycan biosynthesis, and a
putative osmoregulatory role in biofilm formation was suggested
(14). This provides circumstantial supporting evidence for
our hypothesis that GbpB is also involved in peptidoglycan biosynthesis.
 |
ACKNOWLEDGMENTS |
This work was supported by Public Health Service grant R37
DE-06153 (NIDCR) to D.J.S. and grant 99/08278-9 (FAPESP) to R.O.M.-G.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Molecular Genetics, The Forsyth Institute, 140 Fenway, Boston, MA
02115. Phone: (617) 262-5200, ext. 344. Fax: (617) 262-4021. E-mail: mduncan{at}forsyth.org.
Editor:
E. I. Tuomanen
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Infection and Immunity, November 2001, p. 6931-6941, Vol. 69, No. 11
0019-9567/01/$04.00+0 DOI: 10.1128/IAI.69.11.6931-6941.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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