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Infection and Immunity, February 2001, p. 1016-1024, Vol. 69, No. 2
0019-9567/01/$04.00+0 DOI: 10.1128/IAI.69.2.1016-1024.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Microsporidian Invasion Apparatus: Identification
of a Novel Polar Tube Protein and Evidence for Clustering of
ptp1 and ptp2 Genes in Three
Encephalitozoon Species
Frédéric
Delbac,*
Isabelle
Peuvel,
Guy
Metenier,
Eric
Peyretaillade, and
Christian P.
Vivares
Equipe de Parasitologie Moleculaire et
Cellulaire, LBP, UMR CNRS 6023, Université Blaise Pascal,
63177 Aubière Cedex, France
Received 18 July 2000/Returned for modification 26 September
2000/Accepted 8 November 2000
 |
ABSTRACT |
Microsporidia are unicellular eukaryotes occuring as obligate
intracellular parasites which produce resistant spores. A unique motile
process is represented by the sudden extrusion of the sporal polar tube
for initiating entry of the parasite into a new host cell. The complete
sequence of an acidic proline-rich polar tube protein (renamed PTP1)
has been previously reported for Encephalitozoon cuniculi
and E. hellem. Our immunological investigations provided evidence for an additional PTP in E. cuniculi, termed PTP2.
The corresponding gene was sequenced and then expressed in
Escherichia coli. As expected, mouse antibodies raised
against the recombinant protein reacted specifically with the polar
tube. The singlecopy ptp1 and ptp2 genes of
E. cuniculi were tandemly arranged on chromosome VI.
Polyadenylation of the mRNAs was demonstrated. Identification and
sequencing of homologous genes in the two other human-infecting Encephalitozoon species (ptp2 in E. hellem and ptp1 and ptp2 in E. intestinalis) were facilitated by conserved gene clustering. PTP2
appears as a novel structural protein (30 kDa) with a basic lysine-rich
core and an acidic tail. Unlike PTP1, this protein is devoid of large
tandem repeats. The interspecies conservation of cysteine residues
supports a major role of disulfide bridges in polar tube assembly. The
two PTPs should serve as both molecular markers of spore
differentiation and diagnostic tools.
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INTRODUCTION |
Microsporidia (phylum Microspora
Sprague, 1977) are small spore-forming unicellular eukaryotes with an
obligate intracellular parasitic lifestyle. These parasites,
characterized by 70S ribosomes and the absence of mitochondria, were
thought to be very ancient (10). However, data accumulated
from recent molecular phylogenies lend credit to a close relationship
of these organisms with fungi (36). Several species are of
medical and veterinary significance, infecting animals and humans
(7). Three species from the Encephalitozoon genus (E. cuniculi, E. hellem, and E. intestinalis) are known to be involved in AIDS-associated
pathologies (13). Disorders in immunocompetent individuals
also have been reported. For example, E. intestinalis was
found in travelers, not infected with human immunodeficiency virus,
presenting with chronic diarrhea (33). Serological studies
with blood donors and pregnant women revealed a prevalence of about 8%
(37).
Microsporidia exhibit a remarkable invasion mechanism depending on the
extrusion of a specific organelle called the polar tube, originally
coiled within the spore. The polar tube discharges from the anterior
pole of the spore like an everting glove finger (25) and
then is used to transfer the sporoplasm inside a potential host cell.
The whole process of in vitro spore germination is completed in less
than 2 s (17). Very little information is available
about the primary structure of polar tube proteins (PTPs) and the
extent of interspecies sequence variability. Molecular characterization
of the polar tube is therefore of importance for improving diagnostic
and defining therapeutic strategies.
The polar tube resists dissociation in detergents, urea, and acids but
dissociates in the presence of thiol-reducing agents, e.g.
2-mercaptoethanol or dithiothreitol (DTT) (19, 40). A Glugea americanus 43-kDa PTP, differentially solubilized
with 2% DTT and purified by high-pressure liquid chromatography, was shown to contain a large amount of proline residues (19).
Proline-rich PTPs were similarly isolated from
Encephalitozoon species, with the apparent molecular sizes
varying from 45 to 55 kDa (20). We previously described
the first complete sequence of a proline-rich 55-kDa PTP in E. cuniculi (11). The predicted protein has 395 amino
acids (aa), with a central region consisting of four 26-aa repeats, and
shows no homology with known proteins. A similar ptp gene
encoding a 453-aa protein in E. hellem has been also sequenced (21). The repeated region (six 20-aa repeats) is
very divergent relative to that in E. cuniculi
(22). Since the molecular sizes calculated from sequences
(43 kDa in E. hellem and 37 kDa in E. cuniculi)
are not consistent with those deduced from sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) migrations (50 to
55 kDa), we propose the designation PTP1 for members of this new
protein family.
We identified an E. cuniculi PTP (PTP2) assumed to be more
conserved than PTP1 among microsporidian species, as judged by immunological cross-reactivity with a 34- to 35-kDa protein from a
species of the genus Glugea (12). As reported
in the present paper, the genes encoding PTP2 in the three
human-infecting Encephalitozoon species were fully
sequenced. To complete the comparison of the two different PTPs, the
ptp1 gene was also cloned and then sequenced in E. intestinalis. The conservation of the PTP2 sequence within a
microsporidian genus suggests that this protein plays a basic role in
the construction of the polar tube and may be of interest for medical applications.
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MATERIALS AND METHODS |
Growth of parasites and isolation of DNA.
E. cuniculi,
E. hellem, and E. intestinalis were grown in vitro in
either Madin-Darby canine kidney (MDCK), human lung fibroblast (MRC-5),
or rabbit kidney (RK13) cells as described elsewhere (2).
Spores collected from supernatants were harvested (5,000 × g for 10 min), washed, purified as described previously
(11), and stored in phosphate-buffered saline (PBS) at
4°C. Genomic DNA was released by boiling purified spores at 100°C
for 10 min.
Antibody production.
Polyclonal antibodies (PAbs) and
monoclonal antibodies (MAbs) to microsporidian proteins were described
previously (11). BALB/c mice were immunized with the
recombinant E. cuniculi (EcPTP2) expressed in E. coli. After expression, the recombinant protein was purified by
chromatography on Ni-nitrilotriacetic acid (Ni-NTA) resin (Qiagen).
Recombinant protein was then excised from Coomassie blue-stained gels
and crushed in PBS with a Potter homogenizer. Mice were injected
intraperitoneally with samples homogenized with Freund complete
adjuvant, and identical injections were given on days 14 and 21 with
Freund incomplete adjuvant. Sera were collected 1 week after the last
injection and stored at
20°C.
SDS-PAGE and Western blotting analysis.
SDS-PAGE was
performed using standard methods (24). Crude extracts from
microsporidia or recombinant bacteria were separated by SDS-PAGE and
transferred to polyvinylidene difluoride membranes. Western blot
analysis was carried out using 10 to 12% polyacrylamide gels run under
reducing conditions with 5 to 10% 2-mercaptoethanol in the loading
samples. After electrophoresis, proteins were transferred to
polyvinylidene difluoride (Immobilon-P; Polylabo). For detection, the
membranes were incubated with MAbs or PAbs and then with horseradish peroxidase-conjugated goat anti-mouse immunoglobulin G (IgG), IgA, and
IgM (Sigma), and bound antibodies were visualised using the ECL system (Amersham).
Indirect immunofluorescence (IFA).
Intracellular parasites
grown for 24 to 48 h in MRC-5 cells on glass slides were fixed
with 4% paraformaldehyde and 0.05% glutaraldehyde for 20 min at room
temperature or with methanol for 10 min at
70°C. Cells were then
permeabilized with 70% ethanol-0.5% Triton X-100 and blocked with
5% skim milk in PBS. Slides were incubated for 1 h with primary
antibodies (PAbs or MAbs) diluted in PBS-0.1% Tween 20, washed, and
incubated further for 1 h in fluorescein isothiocyanate-labeled
goat anti-mouse IgG, IgA, and IgM (Sigma). Slides were mounted and
preparations were examined with a BH2 Olympus epifluorescence microscope.
Peptide sequencing.
The 35-kDa protein isolated from
two-dimensional gels was digested with 0.8 µg of endoprotease-LysC in
0.1 M Tris-HCl (pH 8.6)-0.5 M EDTA-0.03% SDS at 35°C for 18 h, and peptides were then separated using high-pressure liquid
chromatography on DEAE-C18 columns with a gradient of
acetonitrile-0.1% trifluoroacetic acid. One peptide of 15 aa
(AVQGTDRCILAGIID) was sequenced using Edman degradation
(Applied Biosystems 473A sequencer).
Cloning and sequencing of ptp genes.
The
different PCR and single-specific primer PCR (SSP-PCR) amplification
steps are described in Fig. 2. The primers used were A
(5'-CAGGGIACIGAYMGITGYATHYTIGC-3'), B
(5'-GTACTTGCGCTTGTTCACC-3'), C
(5'-GAGGAGACAAGCTAATTGC-3'), D
(5'-GACATACAGAAGACGGGG-3'), E (5'-CTTATCAGAGCAGATGTTC-3'), F
(5'-CCATGCGAACCTAAGAAG-3'), G
(5'-GGCTGAAGTCCATAGTCAAC-3'), H
(5'-GAAGGAGATCAAGGAGAGCCC-3'), I
(5'-ATGAAAGGTATTTCTAAG-3'), J
(5'-GATTGTTTTTAGAGGGATCTG-3'), K
(5'-CATTGTCATTGTCGACATCG-3'), L
(5'-GGCGAGAAGTAACAACAT-3'), M
(5'-GAGATTTCTAACGGCGAGG-3'), N (5'-ATRCAICKRTCIGTICCYTG-3'), and O
(5'-GCAATGGTTCAAAGAGCC-3'). Amplified products were cloned
into pGEM-T Easy Vector System I (Promega). Recombinant plasmids were
sequenced using the ABI Prism Dye Terminator Cycle Sequencing kit
according to the recommendations of the manufacturer (Perkin-Elmer).
Thermocycling of the sequencing reactions and electrophoresis were
carried out on a GeneAmp PCR system 2400 and a ABI Prism 377 sequencer
(Perkin-Elmer), respectively. Gel readings were processed using the
Staden package (35), and the resulting contigs were
compared with databases using BLAST (1). Staden package
and BLAST programs are available on the French molecular biology server Infobiogen.
For application of the SSP-PCR technique (34), digestion
of genomic DNA (200 ng) for 4 h with 100 U of different restriction enzymes was followed by two phenol-chloroform-isoamyl alcohol extractions. A 1-µg sample of pBluescript-II SK(+) (Stratagene) vector was digested using the corresponding enzyme and dephosphorylated with 10 U of calf intestine alkaline phosphatase (Eurogentec). After
two phenol-chloroform-isoamyl alcohol extractions, vector DNA was
coprecipitated with the digested genomic DNA. Ligation was carried out
overnight at 16°C in 12 µl of a mixture containing 6 U of T4 DNA
ligase (Pharmacia) and 1 mM ATP in One Phor All buffer. PCR was carried
out in 50 µl of reaction mixture containing 1 µl of diluted
ligation mixture (1:10), 0.25 µM vector primer (universal or
reverse), 0.25 µM specific primer, 20 µM each deoxynucleoside triphosphate in Taq DNA polymerase buffer (2.5 mM
MgCl2), and 1 U of Taq DNA polymerase (Goldstar; Eurogentec).
EcPTP2 heterologous expression in E. coli.
The
coding sequence of EcPTP2 was amplified by PCR to introduce a
BamHI site at the start codon. The oligonucleotide
5'-GGATCCGCAGCACCTCTCCATG-3' was combined with the antisense
oligonucleotide primer 5'-CACTTGAAGATTCAATCC-3' for PCR
amplification. The PCR product was first cloned into pGEM-T Easy vector
(Promega) and subcloned after BamHI-SacI
digestion into the bacterial expression vector pQE-30 (pQE expression
system from Qiagen). Expression of the recombinant protein was analyzed in E. coli strain M15 after induction with 1 mM IPTG
(isopropyl-
-D-thiogalactopyranoside).
RNA extraction and RT-PCR.
Total RNA was extracted from
E. cuniculi-infected MRC-5 cells. Cells were lysed in 5 ml
of a lysis buffer containing 180 mM Tris, 90 mM LiCl, 4.5 mM EDTA, and
1% SDS (pH 8.2). After incubation at 55°C for 30 min in 1 volume of
phenol-chloroform and three phenol-chloroform-isoamyl alcohol
extractions, RNA was precipitated, resuspended in 200 µl of diethyl
pyrocarbonate-distilled water, and stored at
80°C. DNA was
eliminated by treatment with 10 U of DNase (Promega) in the presence of
40 U of RNAsine (Promega) for 1 h at 37°C. Reverse transcription
(RT) was done using 5 µg of total RNA. After denaturation for 2 min
at 65°C, RNA was incubated with 40 U of avian myeloblastosis virus
reverse transcriptase (Promega) in 50 mM Tris (pH 8.3)-8 mM
MgCl2-30 mM KCl-10 mM DTT-0.5 mM deoxynucleoside
triphosphates-RNAsine-100 pmol of oligo(dT) (5'-GACTCACTATAGGGCATGCTTTTTTTTTTTTTTTTTT-3'). The reaction
mix was incubated for 90 min at 42°C. PCR amplification of the cDNA 3' end was done with a 1:20 dilution of the RT reaction mixture with a
primer specific for either Ecptp1 (D,
5'-GACATACAGAAGACGGGG-3') or Ecptp2 (C,
5'-GAGGAGACAAGCTAATTGC-3') and the primer corresponding to
the adapter sequence (5'-GACTCACTATAGGGCATGC-3').
Sequence analysis.
Protein sequence alignments were
done using the GeneStream alignment program, which is accessible
via an electronic mail server (http://vega.igh.cnrs.fr/bin/nph-align_query.pl). The prediction of
signal peptide cleavage sites was done using the algorithm of von
Heijne (39) and the PSORT program (30).
Nucleotide sequence accession numbers.
The nucleotide
sequences of EcPTP1, EcPTP2, EiPTP1, EiPTP2, and EhPTP2 have been
deposited in GenBank under accession numbers AX007049 through
AX007053, respectively (C. Vivarès, A. Danchin, and F. Delbac. July 1998. Patent WO0001724; FR no. 98/08692, 07.07.1998. Protéines de tube polaire de microsporidie, acides nucléiques codant pour ces protéines et leurs applications).
 |
RESULTS |
An E. cuniculi gene encodes a lysine-rich 30-kDa PTP
(EcPTP2).
We previously showed that the MAb Ec102, directed
against the polar tube of E. cuniculi and reacting with the
proline-rich EcPTP1 (a protein with an apparent size of 55 kDa in
SDS-PAGE), cross-reacted in Western blotting with two other protein
bands of 35 and 28 kDa in size (12). In addition, a PAb
(PAb anti-35) raised against an E. cuniculi 35-kDa protein
band specifically labeled the polar tube mainly after extrusion.
As a prerequisite to the isolation of the gene encoding this putative
35-kDa PTP, two-dimensional electrophoresis and immunoblotting
analysis
(with MAb Ec102 and PAb anti-35) were performed. The
reactive spot,
with a basic pI close to 9, was used for an internal
microsequencing
after endolysine C digestion. One peptide (AVQGTDRCILAGIID)
was chosen for designing oligonucleotide primers. In a first step
of SSP-PCR using
PstI-digested genomic DNA, with a
degenerate
primer A determined from the peptide sequence
QGTDRCILA, a 150-bp
DNA fragment was amplified. The DNA
sequence was then extended
in both directions using two specific
primers (B and C). The new
DNA fragments of about 900 and 800 bp were
delimited by
XhoI and
HindIII restriction
sites, respectively (see Fig.
2). The complete
sequence (1,739 bp)
included a 831-bp open reading frame (ORF)
that encodes a 277-aa
protein.
To assess polar tube localization, heterologous expression of EcPTP2
was done in
Escherichia coli. First, the full-length
ptp2 gene was PCR amplified and cloned into a bacterial
expression
plasmid (pQE30-ptp2) in frame with six histidine residues at
the
N terminus of the protein. After induction, the bacterial lysate
was analyzed by SDS-PAGE. No expression was obtained when using
the
full ORF. Some toxicity of the protein may be assumed, because
IPTG
induction resulted in the inhibition of bacterial growth.
In contrast,
a high expression level was observed with a construction
devoid of the
first 60 nucleotides encoding a potential signal
peptide. The
recombinant PTP2, purified on an Ni-NTA column, migrated
at 35 to 40 kDa, which is again beyond the predicted molecular
mass (Fig.
1A). As expected, MAb Ec102 reacted in
Western blotting
with the recombinant proteins (Fig.
1B). Mouse PAbs
raised against
the recombinant protein recognized both a 35-kDa band in
E. cuniculi protein extracts (Fig.
1C) and the polar tube in
IFA (Fig.
1D),
confirming the isolation of the expected
ptp
gene.

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FIG. 1.
(A) SDS-PAGE analysis of E. coli-expressed
recombinant EcPTP2 (Coomassie blue staining). Lanes 1 and 2, total
E. coli lysate before (lane 1) and after (lane 2) IPTG
induction; lane 3, recombinant EcPTP2 after purification on an Ni-NTA
column; lane M, molecular mass standards in kilodaltons. (B)
Immunoblotting reactivity of MAb Ec102 with E. coli proteins
4 h after IPTG induction. The blot was probed with a 1:10,000
dilution of MAb Ec102 and developed using ECL (Amersham). (C) Lane 2, immunoblot of E. cuniculi whole-cell homogenates probed with
anti-recombinant EcPTP2 antiserum. Lane 1, total E. cuniculi
proteins stained with Coomassie blue. (D) Indirect immunofluorescence
of E. cuniculi spores with extruded polar tubes (arrows).
(1) Labeling with an antiserum against total proteins; (2) specific
labeling of polar tubes with anti-recombinant PTP2. Bars, 5 µm.
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The deduced amino acid sequence of EcPTP2 (see Fig.
4) represents a
277-residue polypeptide with a molecular mass of 30075
Da. The
calculated pI (~8.6) is in agreement with that deduced
from
two-dimensional polyacrylamide gels. Comparison with proteins
from
databases failed to reveal significant homology. The protein
is mainly
characterized by lysine (11.6%) and glutamate (9%) richness.
Tryptophan is the only amino acid which is lacking. The proline
(5.4%)
and cysteine (2.9%) contents are below those of EcPTP1
(13.4 and
4.6%, respectively). The N-terminal part shows characteristics
of a
signal peptide (hydrophobic residues and an alpha-helix),
with a
putative cleavage site between residues 13 and 14. The
central region
contains a lysine-rich octapeptide motif (KPKKKKSK).
In
contrast, a C-terminal region of 27 residues, devoid of any
basic
residue, possesses 4 aspartate and 5 glutamate residues,
thus forming
an acidic tail (pI 3.3). One putative N-glycosylation
site, NSTS
(residues 134 to 137), and one RGD motif (residues
140 to 142),
possibly involved in some protein-protein interactions,
are
present.
Flanking regions are AT rich, particularly a 100-bp sequence extending
upstream from the ATG initiation codon (64% of AT nucleotides).
A
putative polyadenylation site (AATTAAA) is located 6 nucleotides
downstream from the TAA stop codon. We also investigated
the gene
copy number and chromosomal location of
Ecptp2
using Southern
hybridization with a
ptp2 probe to either
E. cuniculi genomic
DNA cut with different restriction
enzymes or the molecular karyotype.
Our data indicate that the
Ecptp2 gene exists as a single copy
per haploid genome and
is located on the same chromosome as the
Ecptp1 gene, i.e.,
chromosome VI (data not
shown).
A ptp1-ptp2 gene cluster exists in the
three Encephalitozoon species.
The chromosomal
colocalization of the E. cuniculi ptp1 and ptp2
genes led us to test possible clustering of these genes, through PCR
experiments with pairs of primers designed to correspond to the 5' end
of one gene and the 3' end of the other gene. Sequencing of a 1.4-kbp
amplified fragment showed that the Ecptp2 gene is located
downstream of the Ecptp1 gene, with the respective ORFs being on the same DNA strand and separated by 860 nucleotides (Fig.
2). There is no sequence homology of this
interval with known genes, while the 3' flanking region of the
ptp2 gene shared homology with an RNA-binding
protein-encoding gene (on the complementary strand). RT of RNAs from
E. cuniculi-infected MRC-5 cells was performed using a
poly(T) oligonucleotide coupled with an adapter sequence in the 5'
region. Specific PCR amplification of 3' regions of the cDNAs
corresponding to Ecptp1 and Ecptp2 mRNAs was then done with primers D and C, respectively, and the primer corresponding to the adapter sequence. Sequencing of the corresponding PCR products (260 and 480 bp) provided evidence for short 3' untranslated regions (UTRs) (25 nucleotides in Ecptp1 and 27 to 29 nucleotides in
Ecptp2) with polyadenylation signals and poly(A) tails (Fig.
3). This confirms that the genomic
sequence is intronless (at least in the 3' end) and supports
independent transcription of the two genes.

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FIG. 2.
Schematic representation of ptp1 and
ptp2 gene clusters with positions of PCR primers (A to O) in
the three Encephalitozoon species, E. cuniculi
(Ec), E. intestinalis (Ei), and E. hellem (Eh).
The peptide obtained by microsequencing of EcPTP2
(AVQGTDRCILAGIID) is indicated by a black square. Sense
primer D, designed 186 bp upstream from the stop codon of
Ecptp1, combined with antisense primer B, designed 380 bp
downstream from the initiation codon of Ecptp2, were used to
amplify a 1.4-kbp DNA fragment. Two primers deduced from the
Ecptp2 sequence (C and E, positions 419 to 699 in the
Ecptp2 ORF) were used to amplify a 280-bp DNA fragment in
E. intestinalis. The corresponding sequence shared about
90% identity with that of Ecptp2 but showed some
differences that were useful to determine specific oligonucleotides.
Downstream and upstream regions of the 280-bp known sequence were
amplified with PstI and HindIII ligation
products, respectively, using two specific primers (F and G) and the
reverse vector primer. Thus, SSP-PCR experiments led to 120-bp (3' with
PstI) and 1,150-bp (5' with HindIII)
amplicons, respectively. The 3' end of Eiptp2 was completed
through another SSP-PCR step with primer H, resulting in a 570-bp
amplification from the ApaI ligation product. The final
sequence is 1,968 bp in length with a predicted 825-bp ORF coding for
EiPTP2. The Eiptp1 gene was amplified using a combination of
an antisense primer in the 5' flanking region of Eiptp2 (J)
and a sense primer (I) determined from the alignment of conserved
regions encoding signal peptides of EcPTP1 and EhPTP1. For E. hellem, primer K, determined in the 3' known flanking region of
Ehptp1, was combined with the reverse primer L, determined
by the alignment of the highly conserved N-terminal sequence encoding
the PTP2 signal peptide in E. cuniculi and E. intestinalis. The whole coding sequence of Ehptp2 and
its 3' UTR were completed by SSP-PCR amplification with primer O. The
1,696-bp sequence is from reference 21.
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FIG. 3.
Alignments of ptp1 and ptp2 gene
5' and 3' flanking regions showing conserved signals. Start and stop
codons are underlined. Identical nucleotides are indicated by
asterisks. The AT-rich consensus sequence in the 5' region and
potential site of polyadenylation are boxed. Partial E. cuniculi cDNAs with short 3' UTRs (less than 30 nucleotides) are
in boldface lowercase letters.
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Several anti-polar tube MAbs, including Ec102, reacted with some
proteins of
E. intestinalis and
E. hellem and
specifically
decorated their respective polar tubes in
immunofluorescence assays
and electron microscope immunocytochemistry
(reference
27 and
unpublished data). In addition,
anti-
E. cuniculi recombinant PTP2
antibodies cross-reacted
by immunoblotting with a 30-to 35-kDa
band and the polar tubes from the
two above-mentioned
Encephalitozoon species, suggesting the
presence of PTP2 homologues. Initially,
based on the use of primers
designed to correspond to
E. cuniculi PTP sequences, a
combination of PCR and SSP-PCR experiments with
E. intestinalis genomic DNA provided a contig of 3,191 bp with
tandemly arranged
ptp1 and
ptp2 ORFs as in
E. cuniculi, with the
noncoding interval being reduced to
790 bp (Fig.
2). The two predicted
ORFs encoding EiPTP2 and EiPTP1 are
825 and 1,116 bp in length,
respectively.
Assuming a similar gene organization in
E. hellem, we
designed primers in the 3' flanking region of
Ehptp1 and
succeeded in
amplifying both the intergenic and
Ehptp2
coding regions. The
sequencing of a 668-bp amplified product showed
that the
Ehptp2 ORF (818 bp) was located 810 bp downstream
of the
Ehptp1 ORF (1,362
bp). The whole coding sequence of
Ehptp2 and the 3' flanking region
were completed by SSP-PCR
amplifications, as shown in Fig.
2.
Southern blotting indicated that
this conserved
ptp1-ptp2 gene
pair (contig 3,212 bp) can
also be assigned to a single chromosome
(data not
shown).
Sequence comparison of the 5' and 3' flanking parts of the
ptp genes reveals some highly conserved AT-rich motifs (Fig.
3).
For the
ptp2 genes, an AT-rich region (67%) extends
over 60 nucleotides
upstream of the translation start codon. As the
transcription
initiation site has not been determined, this may include
5' leader
and promoter elements. There is more than 80% identity in
this
region shared by the three
ptp2 genes.
Ecptp1 exhibits an AT-rich
5' region with a motif 23 nucleotides upstream of the start codon
(boxed in Fig.
3) similar to
that of
ptp2 genes. However, this
motif is absent in the
sequence reported for
Ehptp1 (
21). The
typical
polyadenylation signal, usually seen in higher eukaryotes
(AATAAA), is found 5 nucleotides downstream of the TAG stop
codon
of each
ptp1 gene in the three
Encephalitozoon species. The TAA
stop codon, conserved for
the three
ptp2 genes, is followed by
a similar motif,
AATTAAA (Fig.
3). In
E. intestinalis, as in
E. cuniculi, an additional ORF having significant homologies
with
a gene encoding a RNA-binding protein is associated with the
complementary
DNA strand of the 3' flanking region of
ptp2.
Comparison of PTP2-coding regions.
PTP2s are basic proteins of
similar size (close to 30 kDa), with the maximal difference between
EcPTP2 and EhPTP2 being only five residues (Table
1). The degree of conservation at the
amino acid level is higher than for PTP1 and extends throughout the entire coding region (Fig. 4). There is
more than 80% identity between EcPTP2 and EiPTP2, 58% identity
between EcPTP2 and EhPTP2, and 60% identity between EiPTP2 and EhPTP2.
Thus, the PTP2 of E. intestinalis is more closely related to
that of E. cuniculi than to that of E. hellem.

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FIG. 4.
Alignment of the three complete PTP2 amino acid
sequences. Amino acids are numbered on the right. Identical residues
are indicated by asterisks. The common putative cleavage site for the
signal peptide is shown by an arrow. The eight cysteine residues are
shaded. The common putative N-glycosylation site and the RGD sequence
are indicated in boldface. The lysine-rich central region and the
acidic tail are underlined.
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Three different regions can be distinguished: an N-terminal part
of ~50 noncharged residues, an internal basic region including
a
central lysine-rich hexapeptide (consensus K/VKKKS/TK), and
an
acidic C-terminal part (24 to 27 aa). An N-terminal signal
peptide
forming an

-helix is predicted, but cleavage at position
13 remains
to be demonstrated. The major residue is lysine (Table
1), and one
glutamate residue is observed at the C terminus of
each PTP2. The other
predominant amino acids are glutamate (5.9
to 9.0%), glycine (7.6 to
9.2%), serine (4.8 to 6.9%), and glutamine
(5.8 to 7.3%). The eight
cysteine residues are similarly located
in the three PTP2 sequences
(Fig.
4). Putative N-glycosylation
sites were also deduced from the
sequences: two in
E. intestinalis (positions 132 to 135 and
248 to 251) and one each in
E. cuniculi (134 to 137) and
E. hellem (134 to 137); just downstream of this
site, an RGD
motif (for cell attachment?) is found in
E. cuniculi and
E. intestinalis but is replaced by RGN in
E. hellem.
A shorter PTP1 with degenerate repeats in E. intestinalis.
The PTP1-coding region in E. intestinalis, representing a 371-residue polypeptide (35 kDa), is
shorter than those in other species (43 kDa in E. hellem and
37 kDa in E. cuniculi). Sequence alignment confirmed the
highest homology in the N- and C-terminal domains (Fig.
5A). The N-terminal signal peptide is
remarkably conserved (17 identical residues over 22). The whole
sequence of EiPTP1 showed only 48 to 49% identity with those of EhPTP1 and EcPTP1, mainly because of the divergent central domain (delimited by common boundaries PGYY/GQ in Fig. 5A) The repetitive character of
this core is less evident in E. intestinalis. Only two
major, highly degenerated repeats of 27 or 28 aa were indeed
distinguishable (Fig. 5B), contrasting with the nearly perfect repeats
seen in EhPTP1 (six 20-aa repeats) and EcPTP1 (four 26-aa repeats)
(11, 21). This suggests a rather minor role of such
repeats in PTP1 organization and function.

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|
FIG. 5.
(A) Alignment of the PTP1 amino acid sequences from
E. cuniculi (Ec), E. hellem (Eh), and E. intestinalis (Ei). Amino acids are numbered on the right.
Identical amino acids are indicated by asterisks. The highly conserved
22-aa signal peptide is boxed. The three PTP1s share common N- and
C-terminal parts but diverge in their tandemly repeated sequences,
forming a central core delimited by common boundaries (in boldface).
Conserved cysteine residues are shaded. (B) Alignment of the tandemly
repeated sequences of EiPTP1 (two repeats) and EcPTP1 (four repeats).
Identical amino acids are shaded.
|
|
As expected, proline is the most predominant residue (Table
1). The
glycine content is high (11.8%), and the two hydroxylated
amino acids
represent 21.7%. Tryptophan and arginine residues
are lacking. As
shown in Fig.
5A, at least 13 cysteine residues
are at conserved
positions, including the one at the extreme C
terminus. Unlike in
EcPTP1 and EhPTP1, no N-glycosylation site
was found in
EiPTP1.
 |
DISCUSSION |
The polar tube is a typical microsporidian spore structure whose
extrusion is absolutely required for the invasion of a host cell. Its
protein heterogeneity has been supported by biochemical and
immunological data (3, 12, 20). However, only one PTP (here referred to as PTP1) was defined at the primary structure level,
after isolation of the corresponding single-copy gene in two species of
the family Encephalitozoonidae, E. cuniculi
(11) and E. hellem (21). We
describe here a gene encoding another antigenic protein (PTP2) located
in the polar tubes of three Encephalitozoon species. For a
better comparison, we have also cloned and sequenced the
ptp1 gene of E. intestinalis, a major
human-infecting microsporidian mainly responsible for intestinal
disorders. Alignment of the deduced amino acid sequences confirmed that
the three species exhibit two different PTPs reflecting two novel
structural protein families. While PTP1 is a proline-rich acidic
protein with a highly variable repeat-containing core, PTP2 is a more
conserved lysine-rich basic protein with an acidic tail. The conserved
charged residues in PTP sequences can be thought to be involved in some
protein-protein ionic interactions required for the assembly of the
polar tube. The role of disulfide bonds in protein-protein interactions
has been postulated through in vitro polymerization of a purified PTP
(23 kDa) in Ameson michaelis (40) and
dissociation of the polar tube in the presence of thiol-reducing agents
(19, 40). It seems very likely, therefore, that conserved
cysteine residues in PTP2 as well as PTP1 can form intermolecular
disulfide bridges of primary importance for the high tensile strength
and functioning of the polar tube. This somewhat resembles the case of
proline-rich minicollagens found in extrusive organelles (nematocysts)
involved in prey capture and locomotion of cnidarians
(23). However, it should be stressed that no evident
homology exists between these unusual collagens and known PTPs, despite
the fact that PTP1 is rich in glycine and proline residues.
The two PTPs are characterized by hydrophobic leader sequences
suggestive of secreted proteins. The N terminus of PTP1 consists of a
signal sequence of 22 aa cleaved during maturation, probably for
targeting to the endoplasmic reticulum, in E. cuniculi and E. hellem (11, 21). This peptide also exists in
E. intestinalis PTP1, and the high sequence conservation
strongly argues for a similar processing. The signal peptide for PTP2
is predicted to be cleaved between the 13th and 14th aa. The reduced
length relative to that in PTP1 cannot be due to a misplaced start
codon. No in-frame ATG is found in the upstream region, and an A
occupies the
3 position as observed in 5' UTR of protozoa
(41). Interestingly, the start codon is preceded by a
trinucleotide, AAG, which is common to both ptp genes (Fig.
3) and the recently characterized 5' UTR of an E. cuniculi
gene encoding the spore wall protein SWP1 (6).
Several potential glycosylation sites can be deduced from PTP1 and PTP2
sequence analysis, suggesting their glycoprotein nature, which is in
agreement with cytochemical data indicating the presence of
glycoconjugates in the polar tube (38). Recent electron
microscope studies indicate that the microsporidian spore can attach to
the host cell membrane prior to the invasion and that entry of
sporoplasm occurs by phagocytosis like for other intracellular
parasites (8, 28). In addition, the basolateral domain of
enterocytes would be the preferential site of penetration for E. intestinalis, as suggested by confocal microscopy observations of
the colocalization of the parasite and F-actin at the periphery of host
cells (16). Some N-linked oligosaccharides of PTPs might
be essential for early interactions between the polar tube and the host
cell surface.
Encephalitozoon species possess the smallest nuclear genomes
so far identified: 2.9, 2.6, and 2.3 Mb in E. cuniculi, E. hellem, and E. intestinalis, respectively (4,
5). A report on a 4.3-kb chromosomal region of E. cuniculi has revealed that some intergenic regions can be less
than 50 bp (15). Our data provide additional information
about gene organization and transcription of microsporidian genes. All
Encephalitozoon ptp1 and ptp2 genes are present
as a single copy with a common clustering on one chromosome, with
conserved orientation and spacing. This is the first example of
conservation of synteny between microsporidian genomes. The products of
the two contiguous genes are involved in the construction of the same
cellular structure, the polar tube. This supports the conception that a
strong selection pressure maintains the evolutionary conservation of
the order of genes whose products are physically associated, as
frequently invoked for prokaryotic gene clusters. Conserved synteny has
been also reported among the chromosomes of all four species of human
malaria parasites (9). We demonstrated that E. cuniculi ptp1 and ptp2 mRNAs are polyadenylated and
display reduced 3' UTRs. Short 3' UTRs have been described for
Giardia, an amitochondriate parasitic flagellate with a
small genome (26, 29). It seems likely that the 5' UTRs of
ptp mRNAs are very short, as is the case for the
SWP1 gene (6). In Trypanosoma, genes
are transcribed polycistronically, with the pre-mRNA being processed by
3' -end formation and trans splicing to create conventional
eukaryotic monocistronic mRNAs (18). Caenorhabditis
elegans also contains numerous polycistronic clusters with
intergenic regions less than 200 bp in length (31). Considering the rather large interval between the ptp1 and
ptp2 ORFs, short untranslated regions, and mRNA
polyadenylation, we conclude that there are two separate transcription
units. Studying the differential expression of PTP1 and PTP2 during
development of the parasite within parasitophorous vacuoles is a future
challenge for a better understanding of sporogenesis events.
Microsporidia are ubiquitous parasites, suggested to be waterborne
pathogens (14). There is need for new detection
techniques. Serological diagnosis using recombinant PTPs as antigens,
in Western blotting or enzyme-linked immunosorbent assay, might be a
potential tool to evaluate the prevalence of microsporidia. Through PCR amplifications of the PTP1 repeated regions in different E. cuniculi isolates, we provided the first data about the
variability in both the sequence and repeat number of this protein
(32). Further search for PTP1 and PTP2 homologues in
species from other microsporidian genera should be undertaken to
identify the most characteristic signatures. Immunological
cross-reactions with proteins of the fish microsporidian species
Glugea atherinae have been observed (12). This
species, characterized by a larger genome (19.5 Mb), could be used to
determine whether the synteny for the two ptp genes is
maintained. Cloning and molecular characterization of new
ptp genes, in conjunction with development of techniques for genetically manipulating microsporidia, will be required for
elucidation of the structure of the microsporidian polar tube and its
extrusion mechanism. Are PTPs truly unique to the phylum Microspora?
The identification of sequences having homologies with ptp
genes in lower metazoa, especially the myxozoa, which exhibit
polar tube-like extrusomes, might help us to understand the
evolutionary history of PTPs.
 |
ACKNOWLEDGMENTS |
We thank J. D'Alayer for peptide sequencing (Laboratoire de
Microséquençage des Protéines, Institut Pasteur,
Paris, France), P. Peyret for helpful discussions, and B. Chebance for
technical assistance.
F. D. and I. P. were supported by a grant from the
Ministére de l'Education Nationale de la Recherche et de la Technologie.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Equipe de
Parasitologie Moléculaire et Cellulaire, LBP, UMR CNRS 6023, Université Blaise Pascal, 24 Avenue des Landais, 63177 Aubière Cedex, France. Phone: 33.4.73.40.78.68. Fax:
33.4.73.40.74.55. E-mail:
frederic.delbac{at}lbp.univ-bpclermont.fr.
Editor:
T. R. Kozel
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Infection and Immunity, February 2001, p. 1016-1024, Vol. 69, No. 2
0019-9567/01/$04.00+0 DOI: 10.1128/IAI.69.2.1016-1024.2001
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