Previous Article | Next Article 
Infection and Immunity, December 2002, p. 6798-6804, Vol. 70, No. 12
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.12.6798-6804.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
The Abundant Polyadenylated Transcript 2 DNA Sequence of the Pathogenic Protozoan Parasite Entamoeba histolytica Represents a Nonautonomous Non-Long-Terminal-Repeat Retrotransposon- Like Element Which Is Absent in the Closely Related Nonpathogenic Species Entamoeba dispar
Ute Willhoeft, Heidrun Buß, and Egbert Tannich*
Bernhard Nocht Institute for Tropical Medicine, 20359 Hamburg, Germany
Received 31 May 2002/
Returned for modification 18 July 2002/
Accepted 24 August 2002

ABSTRACT
While comparing gene expression in the pathogenic organism
Entamoeba histolytica and the closely related but nonpathogenic species
Entamoeba dispar, we discovered that the
E. histolytica abundant
polyadenylated transcript 2 (ehapt2) and corresponding genomic
copies are absent in
E. dispar. Although polyadenylated, ehapt2
does not contain any overt open reading frame. Southern blot
and sequence analyses revealed that about 500 copies of ehapt2
genomic elements were present in each cell and that the copies
were distributed throughout the ameba genome. The various ehapt2
elements are regularly located in the vicinity of protein-encoding
genes, downstream of pyrimidine-rich sequence stretches (40
to 125 bp; CT content, 79.2 to 85.5%), and are flanked by duplicated
target sites of variable length. Target site duplications were
obviously generated during integration of ehapt2 into the
E. histolytica genome as one copy of the flanking repeat and the
complete ehapt2 element are specifically absent in orthologous
E. dispar genomic sequences. ehapt2 shares 3' sequences with
EhRLE, a recently identified non-long-terminal-repeat (non-LTR)
retrotransposon-like element of
E. histolytica, which contains
a conceptual open reading frame for reverse transcriptase. Thus,
ehapt2 has all of the properties of nonautonomous non-LTR retrotransposons.
A comparison of various
E. histolytica isolates suggested that
transposition of ehapt2 takes place at a very low frequency
as the genomic localization of ehapt2 elements was found to
be well conserved. A mobile element such as ehapt2 could be
a suitable mechanism to explain the infrequent and late transition
of
E. histolytica from a harmless gut commensal to an invasive
pathogen.

INTRODUCTION
The intestinal protozoan parasite
Entamoeba histolytica, the
causative agent of human amebiasis, is responsible for millions
of cases of ulcerative colitis or extraintestinal abscesses
annually (
25). In addition to
E. histolytica, there is a second,
morphologically indistinghuishable
Entamoeba species,
Entamoeba dispar (
10). Genetically,
E. histolytica and
E. dispar are the
closest relatives among all
Entamoeba species known so far (
4),
and these two species are highly similar in terms of cell biology
and host range (both can infect only humans and a few Old World
monkey species). However, after colonization of the human gut,
only
E. histolytica is able to invade tissues and cause disease,
whereas
E. dispar obviously is a harmless gut commensal as infection
with this parasite has never been found to be associated with
any form of amebic disease.
The exceptionally close phylogenetic relationship between E. histolytica and E. dispar has been documented by DNA comparisons. The rRNA genes are 98.4% identical (5), and on average, the nucleotide sequences of the protein-encoding and noncoding integenic regions differ by only 6.5 and 13.1%, respectively (27). In addition, mapping of chromosomes with a large number of cDNA probes has revealed that gene linkage groups are highly conserved in the two species. Moreover, sequencing of a small number of orthologous genomic regions has suggested that the two organisms are fully synthenic (27, 28).
In recent years, a number of E. histolytica molecules considered to be important for host tissue destruction have been identified and characterized on the molecular level; these molecules include the galactose-inhibitable surface lectin (15), pore-forming peptides (14), and cysteine proteinases (20). Although quantitative differences have been observed, qualitatively the various classes of molecules are found to be present in both ameba species (22). Thus, it appears that the key for E. histolytica pathogenicity has not become evident yet.
Recently, we reported the identification of two abundant polyadenylated transcripts (0.5 and 0.6 kb; designated E. histolytica abundant polyadenylated transcript 1 [ehapt1] and ehapt2, respectively), which together represent about 19% of the total E. histolytica poly(A)+ RNA but do not contain any overt open reading frame (ORF) (29). The corresponding genomic sequences for the two transcripts were found to be present at high copy numbers and to be distributed throughout the ameba genome. While the region coding for ehapt1 is part of a larger >3.3-kb repetitive unit (Willhoeft and Tannich, unpublished data), ehapt2 appears to represent the full-size element as two genomic clones were found to contain the entire sequence but no additional conserved up- or downstream regions (1, 7).
Here we describe a detailed analysis of ehapt2 sequences performed within the genomic context and provide evidence that ehapt2 is a nonautonomous non-long-terminal-repeat (non-LTR) retrotransposon-like element. Interestingly, sequences corresponding to ehapt2 were found to be absent in E. dispar.

MATERIALS AND METHODS
Entamoeba isolates and culture conditions.
The
E. histolytica and
E. dispar isolates used were obtained
from the following sources: HM:1-IMSS, HK-9, and NIH:200, provided
by the American Type Culture Collection; SAW142, SAW760, and
SAW 1798, provided by Peter Sargeaunt, London School of Hygiene
and Tropical Medicine; ERI27, ERI1007, and ERI1769, provided
by Rolf Michel, Ernst Rodenwald Institute, Koblenz, Germany;
and BNI0496:4, BNI1196:1, BNI1296:1, BNI0297:1, BNI0397:2, BNI0497:1,
and BNI0398:2, isolated at the Bernhard Nocht Institute for
Tropical Medicine, Hamburg, Germany. All ameba isolates were
cultured under axenic or xenic conditions in TYI-S33 or TYSGM-9
medium, as previously described (
8,
9).
E. histolytica isolates
HM:1-IMSS, HK9, NIH:200, and BNI0398:2 were grown axenically,
whereas
E. histolytica isolates ERI27, ERI1796, BNI0496:4, BNI1296:1,
and BNI0497:1, as well as all
E. dispar isolates (namely, SAW142,
SAW760, SAW1798, ERI1007, BNI1196:1, BNI0297:1, and BNI0397:2)
were grown xenically. All isolates were classified as
E. histolytica or
E. dispar on the basis of zymodeme and DNA analyses (
19,
23).
Northern and Southern blot analyses.
Ameba DNA or RNA were isolated by standard procedures (18). For Northern blot analysis, 10 µg of total RNA was separated on a 1% agarose-formaldehyde gel and transferred to nylon membranes. For Southern blot analysis 3 µg of genomic DNA was digested with restriction endonuclease EcoRI, separated on a 1% agarose gel, and transferred to nylon membranes. Field inversion gel electrophoresis (FIGE) was carried out at 200 V for 8 h with reverse-mode intervals of 1 to 20 s and then for another 8 h with reverse-mode intervals of 0.8 to 1.5 s by using an A5 electrophoresis chamber obtained from AGS, Heidelberg, Germany, and a Switch Back pulse controller obtained from Hoefer Pharmacia Biotech Inc., San Francisco, Calif. All blots were hybridized with random primed EhEST44, an ehapt2 cDNA probe previously cloned in our laboratory (29).
Molecular cloning of larger ehapt2-containing genomic E. histolytica DNA sequences.
A genomic E. histolytica library derived from isolate HM:1-IMSS, a generous gift from John Samuelson (Harvard School of Public Health, Boston, Mass.), was screened with the ehapt2 cDNA probe. Five of the various clones identified and purified were sequenced entirely by the dideoxy chain termination method with an ABI 377 sequencer.
PCR analysis.
A number of different genomic DNA fragments of the various E. histolytica and E. dispar isolates were amplified by PCR and subjected to DNA sequencing. PCR was performed under standard conditions (18) with template DNA isolated from cultured ameba trophozoites. DNA fragments from the genomic regions were amplified with the following primer pairs: p1/np1, 5'-GCA ACT AGT GTT AGT TA and 5'-CCT CCA AGA TAT GTT TTA AC; ehapt2 internal fragment, 5'-CGT CTG AAA CAC CAC ACA CAA CCC C and 5'-CCT AGC TCA GGG GAG ACT AAT CCC; genomic fragment comprising ehapt2 plus up- and downstream sequences corresponding to clone gEh-AP, 5'-CAC CTC TCA CTC TTA CTC C and 5'-CGA AGA TTA AAA CAA AGA C; genomic fragment comprising ehapt2 plus up- and downstream sequences corresponding to clone gEh-V.1, 5'-GCT TTG AGG AGG TAA AGG and 5'-GAA GTA GAG ATG ATA AGG; genomic fragment comprising ehapt2 plus up- and downstream sequences corresponding to clone gEh-V.2, 5'-CAA ACC ATT TCA AAT GAT CC and 5'-CTT TGC TCA TTG AAC TTA GC; and genomic fragment comprising ehapt2 plus up- and downstream sequences corresponding to clone gEh-VIII, 5'-CGT CGT ATT TTT TAT CAA TTC ATT TC and 5'-GCC CTA TTT TCA AGT TTG CAG.
DNA sequence analysis.
Sequences were edited by using the DNASIS-MACv2.0 software package. Two sequences were compared by using the BLAST-2-SEQUENCES program from the National Center for Biotechnology Information (NCBI) (www.ncbi.nlm.nih.gov/blast/bl2seq/bl2.html), and multiple-sequence alignments were constructed by using ClustalW (www2.ebi.ac.uk/clustalw/). Genome sequence searches were done by using BLASTN and the NCBI GenBank database (www.ncbi.nlm.nih.gov/BLAST), as well as the Entamoeba genome databases of The Institute for Genomic Research (www.tigr.org/tdb/e2k1/eha1) and the Sanger Center (www.sanger.ac.uk/Projects/E_histolytica).
Nucleotide sequence accession numbers.
The nucleotide sequences for the E. histolytica genomic regions described in this study have been submitted to GenBank under accession numbers X70851 for gEh-AP, AY141198 for gEh-111, AY141199 for gEh-V.1, AY141200 for gEh-V.2, AY141201 for gEh-VIII, and AY141202 for gEh-X.

RESULTS
Sequences corresponding to ehapt2 are absent in E. dispar.
To compare the expression of various genes in
E. histolytica and
E. dispar, a large number of independent cDNA probes, including
a probe for ehapt2, were hybridized to Northern blots prepared
from total RNA of three
E. histolytica and three
E. dispar isolates.
The results indicated that with the exception of the ehapt2
probe, all of the probes hybridized to RNA of both ameba species.
The ehapt2 probe reacted strongly only with RNA of the various
E. histolytica isolates, and no signal was obtained with RNA
of the various
E. dispar isolates (Fig.
1A). In order to examine
whether corresponding ehapt2 genomic copies are present in
E. dispar, Southern blot analysis of restriction enzyme-digested
ameba DNA was performed. As shown in Fig.
1B, no hybridization
of ehapt2 was obtained with any of the DNA extracted from the
various
E. dispar isolates, whereas, consistent with previous
findings, ehapt2 hybridized to a large number of DNA fragments
in all of the
E. histolytica isolates examined. The complex
band patterns obtained appeared to be rather similar, if not
identical, for the various isolates, suggesting that the location
of ehapt2 sequences within the genome is conserved in these
isolates. This suggestion was supported by Southern blot analysis
of high-resolution FIGE-separated DNA (Fig.
1C). Hybridization
of the ehapt2 probe to FIGE blots resulted in identification
of about 50 ehapt2-containing genomic fragments (Fig.
1C, gel
2). However, despite the multitude of hybridizing bands, only
a few restriction fragment length polymorphisms were observed
for the three
E. histolytica isolates, which resembled the results
obtained for restriction fragment length polymorphisms obtained
by comparison of the highly conserved ribosomal DNA-containing
E. histolytica episome (Fig.
1C, gel 1).
ehapt2 elements are flanked by direct repeats and are located in the vicinity of protein-encoding regions, immediately downstream of pyrimidine-rich sequences.
Two ehapt2-containing genomic sequences (gEh-AP [accession no.
X70851] and IE-gen1 [accession no.
M94257]) have been described
previously (
1,
7). However, this small number of sequences did
not allow any assumption about possible preferences for the
location of ehapt2 sequences within the
E. histolytica genome.
Therefore, additional ehapt2-containing clones were isolated
from a genomic
E. histolytica library. Five of these clones,
comprising between 2.8 and 4.6 kb of amebic DNA, were sequenced
entirely (Fig.
2), whereas for the remaining clones only about
500 bp of adjacent DNA upstream and downstream of the ehapt2
elements was analyzed (data not shown). As shown in Fig.
2,
each of the fully sequenced genomic clones contained one copy
of ehapt2, and all of the various copies were located in the
vicinity of ORFs. Some of the ORFs were found to encode proteins
with significant similarity to proteins in public databases.
A careful analysis of the ehapt2 flanking regions did not reveal
any consensus sequence that might predict the location of ehapt2
elements within the ameba genome. However, two sequence peculiarities
were identified, which were present in all ehapt2 flanking regions.
Upstream of the various ehapt2 elements, the genomic sequences
contain a stretch of at least 40 nucleotides and up to 125 nucleotides
which is extraordinary rich in pyrimidine residues (79.2 to
85.5%). In addition, the various ehapt2 elements are located
between individual stretches of identical sequences (direct
repeats) comprising at least 8 nucleotides and up to 26 nucleotides.
This was confirmed by mining the NCBI GenBank database, as well
as The Institute for Genomic Research and Sanger Center
E. histolytica genome databases. BLASTN searches of these databases identified
about 500 sequences with significant similarity to ehapt2, all
of which were from
E. histolytica. There was no apparent homology
to sequences from any other organism. The majority of the 500
sequences identified contained only partial ehapt2 sequences.
Detailed analysis of the 30 sequences with the highest identity
scores revealed that they all represent full-length ehapt2 elements,
and 26 (87%) of them were found to be flanked by a direct repeat
(data not shown). In contrast, sequences containing only portions
of ehapt2 usually did not have flanking repeats. A large number
of these sequences were homologous to EhRLE, a recently identified
retrotransposon-like element of
E. histolytica (
21).
The direct repeats flanking the ehapt2 elements are a consequence of target site duplications.
To determine the breakpoints of ehapt2 deletions in
E. dispar,
we used previous genetic comparisons of
E. histolytica and
E. dispar, which revealed that these two ameba species are syntenic
and that the level of identity of orthologous sequences usually
exceeds 80% (
27). Accordingly, oligonucleotide primers derived
from flanking sequences of four ehapt2 elements were used for
PCR to amplify the corresponding genomic regions from various
E. histolytica and
E. dispar isolates. In addition, primers
specific for ehapt2 and for p1/np1 were used as controls. The
latter primers are specific for
E. histolytica and
E. dispar and amplify a 482-bp fragment, but they do not discriminate
between the two species (
23). As expected, PCR with primers
specific for p1/np1 resulted in the corresponding amplification
product with template DNA from all ameba isolates examined,
whereas ehapt2-specific primers exclusively amplified DNA of
the various
E. histolytica isolates (Fig.
3A and B). Consistent
with previous findings, which revealed minor length polymorphisms
in different ehapt2 transcripts (
29), the ehapt2-specific amplification
products showed broader, less sharp bands after separation in
ethidium bromide-stained agarose gels (Fig.
3B). PCR analysis
with pairs of primers derived from the ehapt2 flanking regions
revealed specific amplification products from all isolates of
both ameba species. However, compared to the
E. histolytica fragments, the amplified fragments from
E. dispar were consistently
smaller by about 550 bp, which corresponds to the length of
ehapt2 (Fig.
3C and D). Sequence analysis and alignment of the
corresponding amplified fragments revealed virtually no differences
among the various isolates within each group of amebae. However,
when the two groups were compared, the sequences flanking ehapt2
differed by about 17%. In addition, the complete ehapt2 elements,
as well as one copy of the direct flanking repeats, were found
to be absent in
E. dispar (Fig.
4), which strongly suggests
that insertion of ehapt2 sequences into the
E. histolytica genome
took place by a mechanism which resulted in duplication of a
short stretch of sequence at the various target sites (target
site duplication [TSD]).

DISCUSSION
Better knowledge of the genetic differences between
E. histolytica and
E. dispar is considered to be important for understanding
why only
E. histolytica is able to cause disease during infection
of the human host. In this study we showed that genomic copies
corresponding to
E. histolytica ehapt2 are absent in
E. dispar.
Southern blot and PCR analyses indicated that the presence of
ehapt2 elements is a species-specific property as such elements
are present in all nine
E. histolytica isolates examined and
absent in all seven
E. dispar isolates examined. As these isolates
were obtained from various geographic areas, ehapt2 appears
to be a reliable marker for differentiating between the two
ameba species. Previous studies of the
E. histolytica IE element
(which is identical to ehapt2) in which dot blot hybridization
was used suggested that the copy number is about 500 copies
per cell (
1). This value is in agreement with our results from
the database BLAST search analysis, although the number of full-length
ehapt2 element copies appears to be smaller. Southern blot and
sequence analyses of larger ehapt2-containing genomic sequences
indicated that the various elements are distributed throughout
the genome as a single copy at each site rather than in tandem
arrays. Thus, it can be calculated that compared to
E. dispar,
E. histolytica contains several thousand base pairs of additional
DNA, distributed in up to 550-bp portions throughout the genome.
ehapt2 elements were regularly found to be located in the vicinity
of protein-encoding regions. Gene expression in
E. histolytica has been shown to occur in a monocistronic fashion (
7), and
both 5' upstream and 3' downstream regions contribute to transcription
regulation (
16). It is likely that the location of ehapt2 in
close proximity to various gene translation initiation or termination
codons influences expression of at least some of the genes.
In addition, it remains to be determined whether there are examples
in which ehapt2 has disrupted an ORF. In recent years, research
on ameba pathogenicity has focused on identification of
E. histolytica molecules that are absent or show reduced expression in
E. dispar.
From the results presented here it is tempting to speculate
that the pathogenicity of amebae might be due to loss of function
rather than gain of function.
Questions remain about the origin and nature of ehapt2. Database searches did not reveal significant similarities of ehapt2 to DNA sequences of any species other than E. histolytica. Therefore, at present, ehapt2 appears to be specific for E. histolytica, and its origin remains unclear. However, the high copy number and the dispersed localization together with the absence in the closely related species E. dispar support the hypothesis that ehapt2 is a transposable element which was integrated into and quickly distributed throughout the E. histolytica genome after separation of the two ameba species from a common ancestor. Recent acquisition and distribution of ehapt2 are supported by the finding that the various ehapt2 elements exhibit >92% sequence identity. A transposable element that is present in one organism but absent in a closely related species or even in a subgroup of the same species is not without precedence, as shown for various transposable elements like mariner, jockey, or hobo in Drosophila (2). The strongest evidence that ehapt2 is indeed a transposable element was obtained by DNA sequencing of several ehapt2-containing genomic regions and comparison of these regions with orthologous sequences from E. dispar. These analyses indicated that the various elements are flanked by short stretches of identical sequences (direct repeats) that are 8 to 26 bp long and that these repeats were obviously generated by TSD during integration of ehapt2 into the E. histolytica genome. TSDs of variable length are a well-known feature of retrotransposons (11) like the Drosophila I-factor (3) and the human L1 retrotransposon (26). In contrast, DNA transposons usually create smaller and, in particular, inverted duplications during transposition (11, 13). Most likely, ehapt2 belongs to the class of nonautonomous non-LTR retrotansposons, as it is small, lacks any ORF, and does not contain LTRs. Moreover, part of the sequence of the 3' portion of ehapt2 (positions 476 to 540) is present in the recently identified multicopy retrotransposon-like element EhRLE of E. histolytica. EhRLE is a 4,086-bp DNA element which contains a region coding for reverse transcriptase (RT) of the type found in non-LTR retrotransposons (21). The 3' sequences of retrotransposons are known to be required for binding of RT (6). Common 3' sequences of full-length autonomous retrotransposons (long interspersed repetitive elements [LINEs]) and shorter nonautonomous retrotransposons (small interspersed repetitive elements [SINEs]) have been identified in various organisms (17), and it has been suggested that the enzymes encoded by LINEs are required for transposition of SINEs (26). Analogous to this, EhRLE and ehapt2 might represent the LINE-SINE relationship, and the RT encoded by EhRLE might be required for retrotransposition of ehapt2. Interestingly, the RT-encoding region of EhRLE is degenerate and could be reconstructed only by alignment of various copies of the element. So far, no active EhRLE copy has been identified (21). This, however, indicates that ehapt2 is no longer able to retrotranspose, which is consistent with our finding that the locations of the various ehapt2 copies within the ameba genome are well conserved in different E. histolytica isolates.
Another specific property of ehapt2 is its location downstream of longer stretches of pyrimidine-rich DNA (CT content, >78%). Whether this is important for integration of the element remains to be determined. However, in the protozoan parasite Trypanosoma cruzi the short interspersed repetitive element (SIRE) is preferentially found in the vicinity of thymidine-rich sequences. Interestingly, SIRE resembles ehapt2 as it is present at a level of several hundred copies per genome, comprises only 427 bp, contains duplicated target site sequences, and is specific for T. cruzi and absent in other Trypanosoma species (24). In addition, SIRE shares a 3' sequence with VIPER, an RT-encoding autonomous retrotransposom of T. cruzi.
Taken together, our results strongly suggest that ehapt2 is a nonautonomous non-LTR retrotransposon of pathogenic E. histolytica, which is absent in the closely related but nonpathogenic species E. dispar. ehapt2 appears to retrotranspose at a very low frequency, if it retrotransposes at all. In this respect it should be emphasized that the majority of E. histolytica infections remain asymptomatic. Only a small proportion of individuals develop amebic disease, and they usually do so months or even years after infection has been established (12, 30). A mobile element with a low transposition frequency would be an ideal candidate to be responsible for the infrequent and late transition of the parasite from a harmless commensal to an invasive pathogen.

ACKNOWLEDGMENTS
We thank Britta Weseloh for skillful technical assistance, John
Samuelson for providing the genomic
E. histolytica library,
and Peter Sargeaunt and Rolf Michel for providing various
E. histolytica and
E. dispar isolates.
This study was supported by Deutsche Forschungsgemeinschaft grant TA 110/4-2.

FOOTNOTES
* Corresponding author. Mailing address: Department of Molecular Parasitology, Bernhard Nocht Institute for Tropical Medicine, Bernhard Nocht Str. 74, 20359 Hamburg, Germany. Phone: 49-40-42818-477. Fax: 49-40-42818-512. E-mail:
tannich{at}bni.uni-hamburg.de.

Editor: W. A. Petri, Jr.

REFERENCES
1 - Bruchhaus, I., M. Leippe, C. Lioutas, and E. Tannich. 1993. Unusual gene organization in the protozoan parasite Entamoeba histolytica. DNA Cell Biol. 12:925-933.[Medline]
2 - Capy, P., D. Anxolabehere, and T. Langin. 1994. The strange phylogenies of transposable elements: are horizontal transfers the only explanations? Trends Genet. 10:7-12.[CrossRef][Medline]
3 - Chaboissier, M.-C., D. Finnegan, and A. Bucheton. 2000. Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3' end. Nucleic Acids Res. 28:2467-2472.[Abstract/Free Full Text]
4 - Clark, C. G., and L. S. Diamond. 1997. Intraspecific variation and phylogenetic relationships in the genus Entamoeba as revealed by riboprinting. J. Eukaryot. Microbiol. 44:142-154.[Medline]
5 - Clark, C. G., and L. S. Diamond. 1991. Ribosomal RNA genes of pathogenic and nonpathogenic Entamoeba histolytica are distinct. Mol. Biochem. Parasitol. 49:297-302.[CrossRef][Medline]
6 - Craig, N. L. 1997. Target site selection in transposition. Annu. Rev. Biochem. 66:437-474.[CrossRef][Medline]
7 - Cruz-Reyes, J., T. ur-Rehman, W. M. Spice, and J. P. Ackers. 1995. A novel transcribed repeat element from Entamoeba histolytica. Gene 166:183-184.[CrossRef][Medline]
8 - Diamond, L. S., D. R. Hariow, and C. C. Cunnick. 1978. A new medium for axenic cultivation of Entamoeba histolytica and other Entamoeba. Trans. R. Soc. Trop. Med. Hyg. 72:431-432.[CrossRef][Medline]
9 - Diamond, L. S. 1982. A new liquid medium for xenic cultivation of Entamoeba histolytica and other lumen-dwelling protozoa. J. Protozool. 68:958-959.
10 - Diamond, L. S., and C. G. Clark. 1993. A redescription of Entamoeba histolytica Schaudinn, 1903 (Emended Walker, 1911) separating it from Entamoeba dispar Brumpt, 1925. J. Eukaryot. Microbiol. 40:340-344.[Medline]
11 - Finnegan, J. D. 1989. Eukaryotic transposable elements and genome evolution. Trends Genet. 6:103-107.
12 - Knobloch, J., and E. Mannweiler. 1983. Development and persistence of antibodies to Entamoeba histolytica in patients with amebic liver abscess. Analysis of 216 cases. Am. J. Trop. Med. Hyg. 32:727-732.
13 - Labrador, M., and V. G. Corces. 1997. Transposable element-host interactions: regulation of insertion and excision. Annu. Rev. Genet. 31:381-404.[CrossRef][Medline]
14 - Leippe, M. 1997. Amoebapores. Parasitol. Today 13:178-183.[CrossRef][Medline]
15 - McCoy, J. J., B. Mann, and W. A. Petri. 1994. Adherence and cytotoxicity of Entamoeba histolytica or how lectins let parasites stick around. Infect. Immun. 62:3045-3050.[Free Full Text]
16 - Nickel, R., and E. Tannich. 1994. Transfection and transient expression of chloramphenicol acetyltransferase gene in the protozoan parasite Entamoeba histolytica. Proc. Natl. Acad. Sci. USA 91:7095-7098.[Abstract/Free Full Text]
17 - Okada, N., M. Hamada, I. Ogiwara, and K. Oshima. 1997. SINEs and LINEs share common 3' sequences: a review. Gene 205:229-243.[CrossRef][Medline]
18 - Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
19 - Sargeaunt, P. G., J. E. Williams, and J. D. Greene. 1978. The differentiation of invasive and non-invasive Entamoeba histolytica by isoenzyme electrophoresis. Trans. R. Soc. Trop. Med. Hyg. 72:519-521.[CrossRef][Medline]
20 - Scholze, H., and Tannich, E. 1994. Cysteine endopeptidases of Entamoeba histolytica. Methods Enzymol. 244:512-523.[Medline]
21 - Sharma, R., A. Bagchi, A. Bhattacharya, and S. Bhattacharya. 2001. Characterization of a retrotransposon-like element from Entamoeba histolytica. Mol. Biochem. Parasitol. 116:45-53.[CrossRef][Medline]
22 - Tannich, E. 1998. Entamoeba histolytica and Entamoeba dispar: comparison of molecules considered important for host tissue destruction. Trans. R. Soc. Trop. Med. Hyg. 92:593-596.[CrossRef][Medline]
23 - Tannich, E., and G. D. Burchard. 1991. Differentiation of pathogenic from nonpathogenic Entamoeba histolytica by restriction fragment analysis of a single gene amplified in vitro. J. Clin. Microbiol. 29:250-255.[Abstract/Free Full Text]
24 - Vazquez, M., C. Ben-Dov, H. Lorenzi, T. Moore, A. Schijman, and M. J. Levin. 2000. The short interspersed repetitive element of Trypanosoma cruzi, SIRE, is part of VIPER, an unusual retroelement related to long terminal repeat retrotransposons. Proc. Natl. Acad. Sci. USA 97:2128-2133.[Abstract/Free Full Text]
25 - Walsh, J. 1986. Problems in recognition and diagnosis of amebiasis: estimation of the global magnitude of morbidity and mortality. Rev. Infect. Dis. 8:228-238.[Medline]
26 - Wei, W., N. Gilbert, S. Oi, J. F. Lawler, E. M. Ostertag, H. H. Kazazian, J. D. Boeke, and J. V. Moran. 2001. Human L1 retrotransposition: cis preferences versus trans complementation. Mol. Cell. Biol. 21:1429-1439.[Abstract/Free Full Text]
27 - Willhoeft, U., L. Hamann, and E. Tannich. 1999. A DNA sequence corresponding to the gene encoding cysteine proteinase 5 in Entamoeba histolytica is present and positionally conserved but highly degenerated in Entamoeba dispar. Infect. Immun. 67:5925-5929.[Abstract/Free Full Text]
28 - Willhoeft, U., E. Campos-Góngora, S. Touzni, I. Bruchhaus, and E. Tannich. 2001. Introns in Entamoeba histolytica and Entamoeba dispar. Protist 152:149-156.[Medline]
29 - Willhoeft, U., H. Buß, and E. Tannich. 1999. Analysis of cDNA expressed sequence tags from Entamoeba histolytica: identification of two highly abundant transcripts with no overt open reading frames. Protist 150:61-70.[Medline]
30 - Wynants, H., J. Van den Ende, J. Randaria, A. Van Gompel, E. Van den Enden, C. Brands, P. Coremans, P. Michielsen, L. Verbist, and R. Colebunders. 1995. Diagnosis of amoebic infection of the liver: report of 36 cases. Ann. Soc. Belg. Med. Trop. 75:297-303.[Medline]
Infection and Immunity, December 2002, p. 6798-6804, Vol. 70, No. 12
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.12.6798-6804.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
This article has been cited by other articles:
-
MacFarlane, R. C., Singh, U.
(2006). Identification of Differentially Expressed Genes in Virulent and Nonvirulent Entamoeba Species: Potential Implications for Amebic Pathogenesis. Infect. Immun.
74: 340-351
[Abstract]
[Full Text]
-
Anbar, M., Bracha, R., Nuchamowitz, Y., Li, Y., Florentin, A., Mirelman, D.
(2005). Involvement of a Short Interspersed Element in Epigenetic Transcriptional Silencing of the Amoebapore Gene in Entamoeba histolytica. Eukaryot Cell
4: 1775-1784
[Abstract]
[Full Text]
-
Boettner, D. R., Huston, C. D., Sullivan, J. A., Petri, W. A. Jr.
(2005). Entamoeba histolytica and Entamoeba dispar Utilize Externalized Phosphatidylserine for Recognition and Phagocytosis of Erythrocytes. Infect. Immun.
73: 3422-3430
[Abstract]
[Full Text]
-
Shah, P. H., MacFarlane, R. C., Bhattacharya, D., Matese, J. C., Demeter, J., Stroup, S. E., Singh, U.
(2005). Comparative Genomic Hybridizations of Entamoeba Strains Reveal Unique Genetic Fingerprints That Correlate with Virulence. Eukaryot Cell
4: 504-515
[Abstract]
[Full Text]
-
Mandal, P. K., Bagchi, A., Bhattacharya, A., Bhattacharya, S.
(2004). An Entamoeba histolytica LINE/SINE Pair Inserts at Common Target Sites Cleaved by the Restriction Enzyme-Like LINE-Encoded Endonuclease. Eukaryot Cell
3: 170-179
[Abstract]
[Full Text]
-
Fisher, O., Siman-Tov, R., Ankri, S.
(2004). Characterization of cytosine methylated regions and 5-cytosine DNA methyltransferase (Ehmeth) in the protozoan parasite Entamoeba histolytica. Nucleic Acids Res
32: 287-297
[Abstract]
[Full Text]
-
Satish, S., Bakre, A. A., Bhattacharya, S., Bhattacharya, A.
(2003). Stress-Dependent Expression of a Polymorphic, Charged Antigen in the Protozoan Parasite Entamoeba histolytica. Infect. Immun.
71: 4472-4486
[Abstract]
[Full Text]