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Infection and Immunity, December 2002, p. 6987-6995, Vol. 70, No. 12
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.12.6987-6995.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Veterinary PathoBiology, University of Minnesota, St. Paul, Minnesota 55108,1 Department of Microbiology and Immunology, Weill Medical College of Cornell University, New York, New York 100212
Received 8 March 2002/ Returned for modification 23 May 2002/ Accepted 23 August 2002
| ABSTRACT |
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| INTRODUCTION |
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Thrombospondin-related adhesive proteins (TRAPs) have been identified in several genera of apicomplexans, including TRAP (38, 39, 45, 53) and CTRP (13, 54, 57, 60, 61) of Plasmodium, Etp100 of Eimeria (10, 32, 56), MIC-2 of Toxoplasma (2, 20), and NcMIC2 of Neospora (24, 46) spp. TRAPs are characterized by the presence of two adhesive modules: one or more von Willebrand factor A (vWA)-like domains, and one or more thrombospondin type 1 (TSP1)-like modules. TSP1-like domains were first identified as "region II" within the Plasmodium circumsporozoite protein (12) which, after the isolation of Plasmodium TRAP (36), was identified as a domain also present in thrombospondin and properdin. A series of studies describe a critical role for TSP1-containing proteins as mediators of host-parasite interactions and in the gliding motility of the parasite (28, 29, 47, 51). Secretion of Toxoplasma MIC-2 is associated with Toxoplasma invasion of host cells (7, 8), and disruption of the Plasmodium berghei TRAP gene resulted in sporozoites that displayed an impaired ability to invade mosquito salivary gland tissue and rat liver cells (52). TRAP genes exhibit isolate-specific and cross-species polymorphisms that might reflect the presence of immune pressure (35, 36, 37, 53). Moreover, antibodies produced against region II of CSP of P. falciparum TRAP confer some protection against the malaria parasite, identifying these proteins as potential malaria vaccine candidates (17).
The presence of TRAP family members throughout the Apicomplexa, their association with key events involved in parasite invasion and motility, and morphological and phylogenetic similarities between C. parvum and other apicomplexans suggest that TRAP may also be involved in the recognition and invasion of intestinal cells by C. parvum (22, 30). Spano et al. (49) first described and characterized a TRAP gene, TRAPC1, in C. parvum. TRAPC1 protein is localized to the apical end of sporozoites and is structurally related to the micronemal proteins MIC2, TRAP and Etp100, but with the notable lack of a vWA domain. The gene coding for a second TSP1 domain-containing C. parvum protein, TRAPC2, was partially characterized as a gene fragment (49) and contains a tandem array of TSP1 motifs. As for the TRAPs of Plasmodium sp. (36, 37), polymorphism has been observed in TRAPC1 and TRAPC2, and PCR-based polymorphism analyses of TRAPC1 and TRAPC2 have been used for genetic fingerprinting of C. parvum isolates of human and bovine origin (26, 33, 34, 48).
Previously, a large-scale random survey of the C. parvum genome conducted in our laboratory revealed the presence of multiple genomic DNA sequences similar to known apicomplexan TRAP genes, including the previously characterized TRAPC1 and TRAPC2 genes of C. parvum (23). Clone CpGR176 was identical to TRAPC2 at both the nucleic acid and the amino acid levels, whereas clones CpGR260 and CpGR493 were highly similar to TRAPC1 and C2 at the amino acid level (e value equals 10-12). To understand the extent of expansion of possible TRAP-like proteins in the Cryptosporidium genome, we initiated the present study to exhaustively identify and characterize additional C. parvum genes containing TSP1 or vWA domains. By using apicomplexan TSP1-like domains as TBLASTN queries to search our C. parvum genome sequence database, we identified a total of 12 C. parvum genes possessing one or more TSP1-like domains. Extracellular examples of the vWA-like domain were not found in the C. parvum genome, either singly or in combination with TSP1 domains. The characterization of these TSP1 containing genes will not only enhance our understanding of the phylogenetic distribution and expansion of these adhesive domains within the apicomplexa (reviewed in reference 55) but also provide insights into the general mechanism employed by C. parvum for attachment and invasion of host cells.
| MATERIALS AND METHODS |
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Isolation of total RNA from C. parvum-infected cells. Sterilized C. parvum oocysts (Iowa strain, originally from C. R. Sterling of Arizona State University) were used to infect confluent human adenocarcinoma (HCT-8; American Type Culture Collection, Manassas, Va.) cell monolayers at a concentration of one oocyst per cell, as previously described (42, 43, 58). Total RNA was prepared from mock-infected and C. parvum-infected HCT-8 cultures at 6, 12, 24, 48, and 72 h postinfection (p.i.) by directly lysing the cells with 4 ml of Trizol Reagent (Gibco-BRL/LifeTechnologies, Gaithersburg, Md.) according to the manufacturer's instructions. Purified RNA was resuspended in RNase-free water, and the integrity of the samples was confirmed by RNA agarose gel electrophoresis.
Expression analysis of TSP1 domain-containing genes during in vitro C. parvum development. To investigate differential expression of the C. parvum TSP1 domain genes during in vitro C. parvum development, sequence-specific primers (Table 1) were designed for each of the TSP1 domain genes, and a semiquantitative reverse transcription-PCR (RT-PCR) analysis was carried out as previously described (1). Briefly, 2.0 µg of total RNA was mixed with 0.74 µg of random hexamer and RNase-free water (to bring up the volume to 12 µl), heated at 70°C for 10 min, and cooled on ice. To this mixture was added a 7-µl aliquot, consisting of 4.0 µl of 5x first strand buffer, 2.0 µl of 100 mM dithiothreitol, and 1.0 µl of 10 mM deoxynucleoside triphosphate mixture. The reaction was equilibrated at 42°C for 2 min on a GeneAmp PCR system 2400 (Perkin-Elmer Cetus Corp., Norwalk, Conn.), after which 1.0 µl (200 U) of SuperScript II RTase was applied. The reaction mixture was then incubated at 42°C for 50 min, heated at 70°C for 15 min, and held at 4°C. A 2.0-µl portion of the first-strand cDNA reaction was used in a 20-µl reaction that contained 1x PCR buffer with 1.5 mM MgCl2 (Perkin-Elmer, Inc.), 200 µM concentrations of each of the four deoxynucleoside triphosphates, 1.0 µM concentrations of the forward and reverse primers correspondent to each TRAP gene, 1.25 U of AmpliTaq DNA polymerase (Perkin-Elmer), and 0.4 µCi of [32P]dCTP (Amersham Pharmacia Biotech, Inc., Piscataway, N.J.). After an initial denaturation at 94°C for 2 min, the reaction mixture underwent multiple cycles of denaturation at 94°C for 30 s, annealing at 57°C for 30 s, and extension at 72°C for 1 min. The number of cycles was preoptimized (25 cycles for amplification of CpTSP4 and 27 cycles for all other genes) so that accumulation of the PCR product was still in the exponential phase (data not shown). After an additional cycle of extension at 72°C for 5 min, the reactions were held at 4°C.
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The PCR products were separated on a 4.0% nondenaturing polyacrylamide gel and signals from specific products were captured and quantified by using a phosphorimaging system (Molecular Dynamics, Inc., Sunnyvale, Calif.). The expression level of TSP1 domain genes at each time point was calculated as the ratio of its RT-PCR product signal to that of the C. parvum 18S rRNA (1). Three independent time course experiments were used in the analysis. Each of the RNA samples from C. parvum-infected HCT-8 cells was demonstrated to be free of contaminating C. parvum genomic DNA by the lack of amplification product from a sample not subjected to RT (data not shown). The mean expression level of each of the TSP1 domain genes was calculated, and the standard deviation was determined. The percentage of expression of each TSP1 domain gene at each time point was also reported as a percentage of the highest level of expression.
| RESULTS |
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Cryptosporidium TSP1 domains were previously described in TRAPC1 (49) and within two gene fragments, TRAPC2 (50) and TRAPC3 (49; GenBank accession number AF073838). Genome analysis in the present study revealed that TRAPC2 and TRAPC3 are fragments of a single ORF and are herein named CpTSP2. This departure from the previous Cryptosporidium TRAP nomenclature reflects the observation that, unlike TRAPC1, CpTSP2 does not possess "TRAP/MIC2"-like motifs, namely, a transmembrane region combined with a short, acidic cytoplasmic domain having a conserved carboxy-terminal proximal tryptophan residue. The newly identified TSP1-like domain-containing genes are similarly herein termed CpTSP3 through CpTSP12. TSP1 domains are present as multiple copies within all C. parvum TSP1 domain genes, except for a single domain within CpTSP6, and are notably present as 13 tandemly arrayed copies within CpTSP2 (see schematic, Fig. 1). The CpTSP2 gene encodes a large, 3,530-amino-acid protein that has a unique multidomain structure additionally composed of multiple Notch/Lin-like domains and a novel cysteine-rich domain that is repeated 10 times (alignments shown in Fig. 2).
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TRAPC1 and CpTSP3 are located on opposite strands within the same genomic contig and likely have a paralogous relationship via gene duplication. Similarities in domain structure with CpTSP4 through CpTSP6 suggests that they might also have an ancestral relationship via gene duplication.
TRAPC1 and CpTSP3 through CpTSP6 contain divergent Apple domains. TRAPC1 and CpTSP3 through CpTSP5 share an amino-terminal region architecture consisting of two Apple domains intervened with a single TSP1-like domain. The second Apple domain is followed by a variable number of additional TSP1-like domains. Apple domains were initially described in the human kallikrein gene (9) and have likely arisen in Apicomplexa via lateral capture, present in Toxoplasma (3) and Eimeria (4). Their presence in Cryptosporidium suggests that, like TSP1 domains, their lateral transfer preceded species divergence of the apicomplexan species. Alignment of C. parvum Apple domains (Fig. 3) delineates two motifs differing by a pair of cysteines, presumably participating in an additional disulfide bond. Although Apple domains containing the extra pair of cysteines are not readily identified by PSI-BLAST or SMART analysis, BLAST screening of CryptoDB with kallikrein and other Apple domain-containing queries identifies the putative Apple domains in CpTSP4 and CpTSP6. Alignments show that this domain is repeated twice in TRAPC1 and CpTSP3 through CpTSP5 and present as a single copy in CpTSP6. Based upon the conservation of structure and repetition within TSP1 domain genes, we propose that this is a discrete globular domain and is probably a divergent Apple domain.
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Expression analysis of TSP1 domain genes. RT-PCR analysis of gene expression of TRAPC1 and CpTSP2 thru CpTSP12 is presented in Fig. 5 and 6. As the number of developing C. parvum life stages within infected cells changes over time, primers specific for C. parvum 18S rRNA (41; see Table 1) were used to normalize the amount of cDNA product of the TSP1 domain genes to that of C. parvum rRNA in the same sample. The mRNA level of TRAPC1 in infected cultures display a high degree of variability, demonstrating that TRAPC1 expression is clearly regulated as C. parvum progresses through its life cycle. The mRNA levels of CpTSP2 thru CpTSP12 in infected HCT-8 cells are also illustrated in Fig. 6, and the percent expression of TSP1 domain genes in infected HCT-8 cells at each sampled time point is presented in Table 2.
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| DISCUSSION |
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The TRAPC1 gene isolated by Spano et al. (49) encodes a protein architecturally similar to Toxoplasma MIC2, with the notable absence of a vWA-like domain. Despite the lack of a vWA module, TRAPC1 is a prominent candidate for a functional Cryptosporidium homologue of MIC2 by virtue of possessing a signal peptide sequence; multiple tandemly arrayed TSP1 domains; a transmembrane region; and a characteristic short, acidic cytoplasmic domain containing a carboxy-terminal tryptophan residue conserved in TRAP, CTRP, MIC2, and Etp100. In addition, TRAPC1 protein is localized within the apical complex of excysted C. parvum sporozoites, similar to the micronemal destination of TRAP, CTRP, MIC2, and Etp100. TRAPC1 is herein described to possess Apple domains and thereby is further distinguished from Plasmodium TRAP and Toxoplasma MIC2, which lack Apple domains. In the present study the identification of a superfamily of C. parvum TSP1 domain-containing genes adds new members to the growing family of TRAP-like proteins (55) and provides information on the phylogenetic distribution of this protein family in the C. parvum genome. Of these genes only CpTSP7 shares with TRAPC1 and other apicomplexan TRAP family members a transmembrane domain followed by a short, acidic cytoplasmic domain and a conserved COOH-terminal tryptophan residue. Although the functional roles of TRAPC1 and CpTSP2 through CpTSP12 have yet to be elucidated, the similar invasion machinery of C. parvum to that of other apicomplexans suggest that C. parvum TSP1 domain containing genes may also be involved in the invasion process of host intestinal cells by C. parvum zoites.
An interesting result of this Cryptosporidium genome-wide screen is the failure to identify a vWA domain, either alone or in tandem with a TSP1 domain. All known apicomplexan vWA domains were tried as TBLASTN queries, as well as various vWA domains of higher eukaryotesall without success. Although it is possible that Cryptosporidium possesses vWA domains that have diverged beyond recognition by TBLASTN screens, it is unlikely that any vWA domain would be missed by SMART profile screening or reiterative PSI-BLAST analysis if it were to reside within any of the 12 identified TSP1-containing genes. Because TSP1 domains are superb TBLASTN queries, and it is unlikely that TSP1 domains were overlooked in the present study, it is therefore assumed that no gene exists in the current Cryptosporidium genome databases possessing both a TSP1 domain and a vWA domain. Thus, Cryptosporidium is fundamentally distinct in this regard in comparison with all apicomplexans analyzed to date: Plasmodium, Toxoplasma, Eimeria, and Neospora. Whether vestigial vWA domains were lost in Cryptosporidium or acquired in other apicomplexans after the split into species is unknown. In Plasmodium spp., an intact vWA domain is essential for TRAP-mediated invasion of mosquito salivary glands but is not required for gliding motility (25, 59). A simple model would propose that vWA domains are involved solely in the insect stage of parasite life cycles, but Toxoplasma MIC2 presumably requires a vWA domain whereas the Toxoplasma parasite does not utilize an insect vector. Regardless of whether vWA domains never entered the Cryptosporidum genome or became vestigial and lost, it can be proposed that, if Cryptosporidium TSP superfamily proteins are involved in the motility and invasion of intestinal epithelial cells, then vWA domains are not essential for this process.
Due to its critical role in parasite motility and attachment to host cells, P. falciparum TRAP has been suggested as a candidate vaccine gene, and it was shown that the disruption of TRAP dramatically blocked parasite motility and resulted in much-reduced infectivity (17, 44). Previously, mouse monoclonal antibodies to C. parvum TRAPC1 functional domains were used in an in vitro inhibition assay to assess their abilities to inhibit parasite infection and growth in host cells. However, only limited reductions on the number of C. parvum development stages were observed at 48 h p.i. (6). Since it is now clear that that there are several additional TSP1 domain genes and that at any stage of infection process there is one or more TSP1 domain genes expressed at high levels (Fig. 6), antibodies against one TSP containing protein may not be sufficient to dramatically inhibit C. parvum's ability to invade host cells. Alternatively, TSP1 domain genes may represent only one of the multiple invasion pathways used by C. parvum.
Previous studies found that TRAP homologues from different Plasmodium species were expressed exclusively at the sporozoite developmental stage and that the expression pattern of P. falciparum TRAP parallels the development of P. falciparum infectivity during sporozoite ontogeny (11, 40). In the present study, it was found that C. parvum TSP1 domain gene homologues display distinct expression profiles; some of them are expressed highly at early stages of infection (CpTSP4, CpTSP7, and CpTSP11), whereas some others are expressed mostly at late stages. The overall expression of all TRAPs peaks at 48 h p.i., although expression of specific TSP1 domain genes is higher at earlier stages than at later stages (i.e., CpTSP2 and CpTSP4). However, since C. parvum has a multistage life cycle and the in vitro development is not synchronous, it remains to be elucidated whether the expression of specific TSP1 domain genes is restricted to a specific developmental stage.
| ACKNOWLEDGMENTS |
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We thank Cheryl A. Lancto for invaluable assistance in cell culture.
| FOOTNOTES |
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