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Infection and Immunity, March 2002, p. 1501-1506, Vol. 70, No. 3
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.3.1501-1506.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Survival of Tropheryma whipplei, the Agent of Whipple's Disease, Requires Phagosome Acidification
Eric Ghigo,1 Christian Capo,1 Marianne Aurouze,1 Ching-Hsuan Tung,2 Jean-Pierre Gorvel,3 Didier Raoult,1 and Jean-Louis Mege1*
Unité des Rickettsies, CNRS UMR 6020, Université de la Méditerranée, Faculté de Médecine, 13385 Marseille Cedex 5,1
Centre d'Immunologie de Marseille-Luminy, Case 906, 13288 Marseille Cedex 9, France,3
Center for Molecular Imaging Research, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts2
Received 31 May 2001/
Returned for modification 15 August 2001/
Accepted 1 November 2001

ABSTRACT
Tropheryma whipplei was established as the agent of Whipple's
disease in 2000, but the mechanisms by which it survives within
host cells are still unknown. We show here that
T. whipplei survives within HeLa cells by controlling the biogenesis of
its phagosome. Indeed,
T. whipplei colocalized with lysosome-associated
membrane protein 1, a membrane marker of late endosomal and
lysosomal compartments, but not with cathepsin D, a lysosomal
hydrolase. This defect in phagosome maturation is specific to
live organisms, since heat-killed bacilli colocalized with cathepsin
D. In addition,
T. whipplei survived within HeLa cells by adapting
to acidic pH. The vacuoles containing
T. whipplei were acidic
(pH 4.7 ± 0.3) and acquired vacuolar ATPase, responsible
for the acidic pH of late phagosomes. The treatment of HeLa
cells with pH-neutralizing reagents, such as ammonium chloride,
N-ethylmaleimide, bafilomycin A1, and chloroquine, increased
the intravacuolar pH and promoted the killing of
T. whipplei.
The ability of
T. whipplei to survive in an acidic environment
and to interfere with phagosome-lysosome fusion is likely critical
for its prolonged persistence in host cells during the course
of Whipple's disease. Our results suggest that manipulating
the intravacuolar pH may provide a new approach for the treatment
of Whipple's disease.

INTRODUCTION
Whipple's disease (WD), first described in 1907 (
33), is a systemic
bacterial infection (
11). It is characterized by low-grade fever,
weight loss, abdominal pain, diarrhea, polyarthralgia, and lymphadenopathy.
Occasionally, hyperpigmentation of the skin, cardiac manifestations,
and neurologic abnormalities are observed (
30). The diagnosis
of WD is usually based on duodenal biopsy, which shows the infiltration
of the lamina propria by large, foamy macrophages containing
periodic acid-Schiff (PAS) inclusions (
16). It is well established
that PAS granules represent intact and degenerated bacilli (
26).
Despite patient susceptibility to antibiotics, clinical relapses
often occur after an antibiotic regimen (
14). In 1991-1992,
the agent responsible for WD was characterized as an actinomycete
by PCR and sequencing of the 16S rRNA gene, and the name
Tropheryma whippelii was proposed (
23,
34). In 1997, it was reported that
the WD agent survived in deactivated human macrophages, but
the isolate could not be subcultured (
25). Recently, our group
succeeded in cultivating the WD agent (
19,
21), and the name
Tropheryma whipplei was made official (
15).
As T. whipplei is detected in PAS-positive inclusions inside macrophages, its intracellular survival is likely related to subversion of phagosome maturation. Indeed, once internalized by host cells, microorganisms are engulfed in phagosomes, which interact with endocytic components through successive fusion events (8). Early phagosomes rapidly and transiently acquire markers of early endocytosis and then markers of late endocytosis, including the lysosome-associated membrane protein (Lamp-1) and the vacuolar proton ATPase (V-ATPase) responsible for acidic pH. Finally, phagosomes fuse with lysosomes and acquire hydrolases, such as cathepsin D (7), thus leading to the lysis of the microorganism. Intracellular bacteria avoid being destroyed in phagolysosomes by different methods. Listeria, Shigella, and Rickettsia escape from the nascent vacuole into the cytoplasm (9). Other bacteria, such as Legionella pneumophila, Brucella abortus, or Chlamydia, replicate in vacuoles that avoid the endocytic pathway (18). Other organisms interfere with phagosome maturation. Mycobacterium species interact with early endosomes but do not fuse with lysosomes (7); mycobacterial vacuoles exclude V-ATPase and consequently do not acidify (28). Salmonella enterica serovar Typhimurium replicates in vacuoles that recruit preexisting lysosomal membrane proteins but do not directly interact with lysosomes (27). Finally, Coxiella burnetii, the agent of Q fever, replicates within acidic phagosomes (3). Increasing the phagosomal pH with lysosomotropic agents such as chloroquine inhibits C. burnetii replication and restores the bactericidal activity of antibiotics in vitro, which is the foundation of the treatment of chronic Q fever, combining tetracycline and chloroquine (20).
In this paper, we show that T. whipplei survives in HeLa cells in acidic vacuoles that interact with late endocytic compartments but exclude cathepsin D, demonstrating that T. whipplei interferes with phagosome-lysosome fusion. The survival of T. whipplei requires acidic pH, since raising the vacuolar pH is detrimental to the bacteria. Thus, the defect of phagolysosome fusion and the acidic pH of T. whipplei vacuoles are likely critical for the persistence of T. whipplei during WD. Manipulating the intravacuolar pH may improve antibiotic efficiency and lead to curing WD.

MATERIALS AND METHODS
Culture of T. whipplei.
The strain Twist-Marseille of
T. whipplei (Collection Nationale
de Culture de Microorganismes de lInstitut Pasteur; no.
I-2202) was cultured as described elsewhere (
15). MRC5 cells
were obtained from the European Collection of Animal Cell Cultures,
Sofia-Antipolis, France (ECACC 84101801). They were cultured
in Eagle minimal essential medium (MEM) containing 4% fetal
bovine serum (FBS; Gibco-BRL, Life Technologies, Eragny, France)
in 150-cm
2 cell culture flasks. When the MRC5 cells were heavily
infected by
T. whipplei, they were detached from the plastic
substrate with glass beads and sonicated. The homogenates were
spun down at 300
x g for 10 min to remove unbroken cells, and
the supernatants were centrifuged at 8,000
x g for 10 min. The
collected bacteria were layered on sucrose gradients, and the
gradients were spun down. The purified organisms were collected
and washed in Hanks balanced salt solution (Gibco-BRL) before
being stored at -80°C. The bacteria were counted by Gimenez
staining and indirect immunofluorescence (see below). Heat-killed
organisms were obtained by heating the bacteria at 100°C
for 1 h and were stored at -80°C.
Intracellular survival of T. whipplei.
The intracellular survival and trafficking of T. whipplei was studied in HeLa cells, the reference model for traffic investigation. HeLa cells (ECACC 93021013) were grown in MEM containing 10% FBS and 2 mM L-glutamine. Cells (2.5 x 104 per assay) were seeded on 12-mm-diameter round coverslips in flat-bottom 24-well plates for 16 h. They were then incubated with T. whipplei at different ratios in antibiotic-free MEM containing 2% FBS for 4 h, washed to remove free bacteria, and incubated for additional times. Intracellular bacteria were counted by using rabbit antibodies (Abs) generated in the laboratory (1:2,000 dilution) and fluorescein isothiocyanate (FITC)-conjugated anti-rabbit immunoglobulin G (IgG) Abs (1:100 dilution; Beckman-Coulter, Roissy, France). The number of intracellular bacteria was expressed as an infection index, which is the product of the mean number of bacteria per infected cell and the percentage of infected cells x 100 (5). The bacterial viability was assessed using the LIVE/DEAD BacLight viability kit (Molecular Probes, Eugene, Oreg.) as recommended by the manufacturer. In brief, cells were lysed, the bacterial suspension was incubated with a combination of SYTO 9 stain and propidium iodide for 15 min, and the fluorescence of the organisms was observed. Only dead organisms were labeled by propidium iodide; viable organisms were labeled by SYTO 9. The results were expressed as the percentage of live bacteria. In some experiments, HeLa cells were first infected by T. whipplei (bacterium-to-cell ratio, 100:1) for 4 h and then incubated with pH-neutralizing reagents for 48 h. The infection index of HeLa cells and the viability of intracellular organisms were determined as described above.
Intracellular traffic of T. whipplei.
HeLa cells were incubated with T. whipplei (bacterium-to-cell ratio, 50:1) for different times. After being washed, the cells were fixed with 3% paraformaldehyde, and free aldehydes were blocked with 0.5 M ammonium chloride. The cells were permeabilized by 0.1% saponin in phosphate-buffered saline containing 10% horse serum for 30 min, washed, and incubated for 30 min with phosphate-buffered saline containing 0.1% saponin, 5% horse serum, a 1:2,000 dilution of rabbit Abs to T. whipplei, and monoclonal Abs specific for Lamp-1 (1:50 dilution; Transduction Laboratories, Lexington, Ky.), cathepsin D (1:500 dilution; Transduction Laboratories), or V-ATPase (1:250 dilution; Chemicon International, Inc., Temecula, Calif.). After being washed, the cells were incubated with 1:100 dilutions of Texas Red-conjugated anti-rabbit IgG Abs and FITC-conjugated anti-mouse IgG Abs (Beckman-Coulter) for 20 min. In some experiments, rabbit Abs specific for all forms of cathepsin D (a gift from S. Kornfeld, St. Louis, Mo.) were used at 1:1,000 dilution, and bacteria were revealed by using mouse anti-T. whipplei Abs at 1:50 dilution. Thereafter, the cells were washed, mounted with Mowiol (Calbiochem, San Diego, Calif.), and stored at 4°C until they were examined. The colocalization of organisms with intracellular markers was examined with a laser scanning confocal fluorescence microscope (TCS 4D; Leica, Heidelberg, Germany) equipped with a 100x oil immersion lens and suitable filters. Optical sections of images (1 µm thick) were analyzed using Adobe Photoshop version 5.5 software. Vacuoles containing T. whipplei were scored as positive for cathepsin D when fluorescence was observed in the phagosome lumen; for membrane markers such as Lamp-1, vacuoles were scored as positive when a fluorescence ring surrounded the organisms. About 30 vacuoles containing T. whipplei were scored per coverslip, and at least three distinct experiments were performed per condition. The results are expressed as the percentage of phagosomes that colocalized with intracellular markers.
Cathepsin D activity measurement.
HeLa cells were infected with live or heat-killed T. whipplei for 4 h. The cathepsin D-sensitive near-infrared fluorescence (NIRF) probe was prepared as previously described (31, 32). It was conjugated with FITC to monitor probe internalization and with Cy5.5 marker that became fluorescent in the near-infrared spectrum after cathepsin D activation. NIRF probe at 0.1 µM was added to the cells 1 h before the end of the infection time. The HeLa cells were then washed to remove noninternalized organisms and free NIRF probe and fixed with methanol at -20°C for 5 min. Bacteria were revealed by Texas Red immunofluorescence as described above. The colocalization of bacteria with NIRF probe was examined with a laser scanning confocal fluorescence microscope equipped with appropriate excitation and emission filters for FITC, Texas Red, and Cy5.5. Images were analyzed using Adobe Photoshop version 5.5 software.
Vacuolar pH.
The phagosome acidification was analyzed using DM-NERF dextran (Molecular Probes) (molecular mass, 10 kDa) (22). HeLa cells were incubated with T. whipplei (at a bacterium-to-cell ratio of 100:1) in the presence of 20 µg of DM-NERF dextran ml-1 for 24 h to allow sufficient dye internalization in the phagosomes. Bacteria were revealed by Texas Red immunofluorescence. The colocalization of the pH probe with intracellular bacteria was analyzed by merging the DM-NERF and Texas Red fluorescence images. The inhibition of V-ATPase by bafilomycin A1 (Sigma Chemicals, St. Louis, Mo.), a specific inhibitor of V-ATPase involved in phagosome acidification (10), was performed by incubating HeLa cells with 10 nM bafilomycin A1 for 2 h after infection with T. whipplei. The intraphagosomal pH was determined by ratiometric analysis of fluorescence intensities. Infected HeLa cells were incubated with buffer solutions with graded pHs (4.0, 5.0, 6.0, 7.0, and 7.5) in the absence or the presence of 10 µM monensin (Sigma Chemicals), which equilibrated the intravacuolar pH with the extracellular pH. After 30 min, fluorescence of DM-NERF dextran (490/440-nm excitation ratio; 530-nm emission) was recovered using a microplate fluorescent reader (Fisher Scientific, Elancourt, France). The mean pH value of the samples was calculated using a reference pH curve.
Data analysis.
Results are given as mean ± standard deviation (SD). The statistical analysis was conducted with paired Student's t tests. Differences were considered significant when P was <0.05.

RESULTS
T. whipplei survives in HeLa cells.
We wondered if
T. whipplei is able to infect HeLa cells and
to survive within them.
T. whipplei organisms were incubated
with HeLa cells, and their uptake was determined. For a bacterium-to-cell
ratio of 50:1, bacterial phagocytosis was detected after 30
min and steadily increased thereafter. As after 4 h all HeLa
cells phagocytosed four to five bacteria (Fig.
1A), the next
experiments used 4 h as the phagocytosis time.
T. whipplei phagocytosis
depended on the bacterium-to-cell ratio; a ratio of 50:1 provided
substantial and reproducible infection of HeLa cells (Fig.
1B)
suitable for trafficking studies (see below). The uptake of
heat-killed bacteria by HeLa cells was lower than that of viable
bacteria: after 4 h of incubation with 50 bacteria per cell,
the infection index was 150 ± 26 versus 430 ±
32 for viable bacteria. The intracellular survival of
T. whipplei was studied by incubating HeLa cells with the organisms for
4 h, washing the cells to remove extracellular bacteria, and
again incubating the cells for 72 h. The infection index remained
constant for 72 h (Fig.
1C). The results were similar when the
viability of intracellular bacteria was assessed. About 90%
of the bacteria were viable after 4 h, and the percentage of
living organisms did not vary during the experiment (Fig.
1C).
These results clearly indicate that
T. whipplei is able to survive
in HeLa cells.
T. whipplei colocalizes with Lamp-1 but not with cathepsin D.
We wondered if the survival of
T. whipplei in HeLa cells was
associated with the alteration of intracellular trafficking.
Cells were incubated with live or heat-killed
T. whipplei, and
the colocalization of the organisms with Lamp-1 was assessed
by immunofluorescence and confocal microscopy. The Lamp-1 fluorescence
was distributed in cytoplasmic patches and appeared as a bright
ring surrounding organisms (Fig.
2A), indicating that Lamp-1
was localized in the phagosome membrane. At 30 min postinfection,
66% ± 10% of phagosomes containing live
T. whipplei organisms
colocalized with Lamp-1; this percentage increased thereafter
and reached 100% at 4 h (Fig.
2B). The kinetics of Lamp-1 acquisition
by phagosomes containing heat-killed organisms was delayed.
At 30 min postinfection, only 30% ± 9% of phagosomes
were colocalized with Lamp-1; at 2 h, 62% ± 7% were colocalized,
and at 4 h 100% were colocalized (Fig.
2B). The delay in Lamp-1
acquisition by vacuoles containing heat-killed bacteria is likely
related to the low uptake of heat-killed bacteria by HeLa cells.
Hence,
T. whipplei resides in vacuoles that acquire markers
of late endosomes. The ability of vacuoles containing
T. whipplei to fuse with lysosomes was investigated by determining the colocalization
of cathepsin D with organisms. Using Abs recognizing all forms
of cathepsin D, the fluorescence of cathepsin D appeared as
vesicular, and it accumulated in the lumen of vacuoles containing
heat-killed
T. whipplei organisms (Fig.
3A). After 1 h of incubation
with heat-killed bacteria, 31% ± 8% of phagosomes acquired
cathepsin D; this percentage increased to 70%± 9% and
92% ± 6% after 4 and 24 h, respectively (Fig.
3B). In
contrast, live
T. whipplei organisms did not colocalize with
cathepsin D (Fig.
3A). Indeed, accumulation of cathepsin D was
detectable in 14% ± 4% and 17% ± 7% of vacuoles
at 2 and 4 h post-infection, respectively (Fig.
3B). Similar
results were obtained with monoclonal Abs directed against the
43-kDa processed form of cathepsin D (data not shown). To characterize
more precisely the impaired colocalization of cathepsin D with
T. whipplei, the activity of cathepsin D was assessed in situ
(Fig.
4). NIRF probe accumulated in the lysosomal compartment
and colocalized with heat-killed bacteria. Cathepsin D was active
in vacuoles containing heat-killed bacteria, as shown by the
distribution of Cy5.5 fluorescence. In contrast, NIRF probe
did not colocalize with
T. whipplei (Fig.
4), whatever the infection
time (data not shown). Taken together, these data indicate that
vacuoles containing live
T. whipplei organisms are unable to
fuse with lysosomes.
T. whipplei survives in acidic vacuoles.
As
T. whipplei interfered with phagosome-lysosome fusion, we
wondered if it also affected the vacuolar pH. HeLa cells were
incubated with
T. whipplei in the presence of DM-NERF dextran
for 24 h (Fig.
5A). Using a ratiometric analysis of fluorescence
intensities, the pH of vacuoles containing organisms was measured.
The pH was 4.7± 0.3 for live organisms and 4.9 ±
0.2 for heat-killed organisms. Similar values were found at
48 h of culture (4.8 ± 0.2 and 5.0 ± 0.3, respectively).
The acidic pH of
T. whipplei vacuoles resulted from the acquisition
of V-ATPase. All phagosomes containing
T. whipplei organisms
expressed V-ATPase at 4 h (Fig.
5B), and its accumulation persisted
for at least 48 h (Fig.
5C). The vacuolar V-ATPase was functional,
since vacuoles containing live and heat-killed organisms displayed
pHs of 6.6 ± 0.2 and 6.5 ± 0.2, respectively,
when HeLa cells infected in the presence of DM-NERF dextran
were incubated with 10 nM bafilomycin A1 for 2 h. Taken together,
these results show that
T. whipplei resides in vacuoles acidified
by V-ATPase.
T. whipplei survival requires acidic pH.
To assess the role of acidic pH in the survival of
T. whipplei,
we investigated the effect of pH-neutralizing reagents on
T. whipplei infection and viability. The agents were used at the
lowest concentrations that neutralized the intracellular pH
without affecting the viability of HeLa cells. Indeed, the vacuolar
pH was significantly increased by 100 nM ammonium chloride,
25 mM
N-ethylmaleimide, 0.1 nM bafilomycin A1, and 2 mM chloroquine.
These concentrations did not affect the viability of HeLa cells
after a 48-h incubation (Table
1). HeLa cells were infected
by
T. whipplei and then treated with pH-neutralizing agents
for 48 h, and the infection index was determined. In untreated
cells, the infection index was high (696 ± 32) after
48 h of culture. In cells treated with ammonium chloride,
N-ethylmaleimide,
bafilomycin A1, or chloroquine, the infection index was significantly
(
P < 0.01) lower (85 to 95% inhibition) than in untreated
cells (Table
1). In addition, neutralizing the vacuolar pH did
not modify intracellular traffic of
T. whipplei. Indeed, after
48 h, when bacterial killing was maximal in cells treated with
pH-neutralizing agents, cathepsin D was not colocalized with
vacuoles containing
T. whipplei (data not shown). These results
indicate that the survival of
T. whipplei in HeLa cells depends
on vacuolar acidic pH.

DISCUSSION
The results show that
T. whipplei survives in HeLa cells in
membrane-bound vacuoles. These vacuoles rapidly acquired Lamp-1
and V-ATPase, two markers associated with late endocytic organelles
(
8). However, the vacuoles do not fuse with lysosomes, as shown
by the lack of colocalization of cathepsin D with organisms.
This finding is not related to the specificity of Abs directed
against cathepsin D, since the same defect was observed with
Abs recognizing all forms of cathepsin D or only its processed
form. In addition, vacuoles containing
T. whipplei organisms
were devoid of cathepsin D probe, which indicates enzyme activity.
The lack of colocalization is specific to viable bacteria, since
cathepsin D clearly colocalized with vacuoles containing heat-killed
bacteria, and this cathepsin D was active. This alteration of
vacuole trafficking has been shown in
Salmonella infection,
in which bacterial vacuoles acquire prelysosomal and lysosomal
markers, including Lamp-1, but are devoid of lysosomal enzymes
(
27). We provide evidence that the blockade of phagosome maturation
by
T. whipplei does not interfere with vacuole acidification.
Indeed,
T. whipplei vacuoles were markedly acidic and accumulated
V-ATPase, which can be inhibited by bafilomycin A1. This ability
to reside in acidic vacuoles is shared with pathogens, including
parasites such as
Leishmania (
2) and bacteria such as
C. burnetii (
3) and
Francisella tularensis (
12). Hence,
T. whipplei inhabits
an acidic compartment that is unable to fuse with lysosomes.
Acidic pH is required for the intracellular survival of T. whipplei. The treatment of HeLa cells with ammonium chloride, N-ethylmaleimide, and chloroquine increased the vacuolar pH and promoted the killing of T. whipplei, suggesting that bacterial survival depends on the intraphagosomal pH. In addition, bafilomycin A1, which specifically inhibits V-ATPase (10) and raised the pH of T. whipplei vacuoles, also induced the killing of T. whipplei. Nevertheless, these reagents may affect other mechanisms that might control the intracellular survival of T. whipplei. Bafilomycin A1 has been reported to affect endosome maturation (6); it is unlikely that the killing of T. whipplei results from pH-dependent alteration of intracellular traffic, since T. whipplei remained in vacuoles that did not fuse with lysosomes in cells treated with pH-neutralizing reagents (data not shown). Bafilomycin A1 and chloroquine decrease inflammatory response (29), and bafilomycin A1 may affect microbicidal activity through changes in cytosolic pH (4). Finally, pH-neutralizing agents may impair the membrane potential necessary for amino acid uptake (6, 22). Such a diversity of side effects of pH-neutralizing reagents could not account for their shared ability to kill T. whipplei. Their ability to kill T. whipplei through increased vacuolar pH is more likely. The metabolic requirement of T. whipplei for an acidic pH remain to be elucidated. Acid-resistant bacteria may exploit the acidic vacuoles as a primary source of carbon and energy. Hence, acidic pH is required for transport of glucose in C. burnetii (13). Phagosome acidification may induce the expression of the two-component regulatory system essential for Salmonella survival (1). Localization in an acidic environment may facilitate the availability of iron essential for the growth of F. tularensis via its dissociation from transferrin (12).
The survival of T. whipplei in acidic nonphagolysosomal vacuoles may have major pathophysiological consequences. WD is characterized by massive infiltration by large foamy macrophages positive for PAS stain within the lamina propria. PAS-positive macrophages are also found in intestinal Mycobacterium avium infection (24), which is characterized by an alteration of the interaction of bacterial phagosomes with late endosomes and a defect of phagosome acidification (7, 28). The characterization of the intracellular compartment that contains organisms may discriminate between the two causes. On the other hand, the high frequency of relapses in WD despite prolonged antibiotic treatment (14) may be related to the low activity of antibiotics in an acidic environment (17). We suggest that combining antibiotics and chloroquine may provide a promising therapeutic approach to WD.

ACKNOWLEDGMENTS
This work was supported by the Programme de Recherche en Microbiologie
Fondamentale et Maladies Infectieuses et Parasitaires.

FOOTNOTES
* Corresponding author. Mailing address: Unité des Rickettsies, CNRS UMR 6020, Faculté de Médecine, 27 Bd. Jean Moulin, 13385 Marseille Cedex 5, France. Phone: (33) 4 91 32 43 75. Fax: (33) 4 91 38 77 72. E-mail:
Jean-Louis.Mege{at}medecine.univ-mrs.fr.


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Infection and Immunity, March 2002, p. 1501-1506, Vol. 70, No. 3
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.3.1501-1506.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
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