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Infection and Immunity, May 2002, p. 2326-2335, Vol. 70, No. 5
0019-9567/02/$04.00+0 DOI: 10.1128/IAI.70.5.2326-2335.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Biological Sciences, Faculty of Science,1 Tropical Marine Science Institute, The National University of Singapore, Singapore 117543,3 Department of Bacteriology, National Institute of Infectious Diseases, Tokyo, Japan 162-86402
Received 10 July 2001/ Returned for modification 14 September 2001/ Accepted 3 January 2002
| ABSTRACT |
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| INTRODUCTION |
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Aeromonas hydrophila is an important pathogen of a wide variety of aquatic and terrestrial animals, especially fish (4). In fish, it causes hemorrhagic septicemia, which often results in high mortalities in commercial aquaculture. Some strains of A. hydrophila are also reported to cause infections in humans. The clinical symptoms include septicemia (17), meningitis (25), peritonitis (35), pneumonia (32), myonecrosis (34), and diarrhea (21). The genus Aeromonas has been classified into 96 serogroups (50, 60), and a role for surface polysaccharides in the pathogenicity of certain A. hydrophila strains has been proposed. For example, the O-antigen lipopolysaccharide (LPS) of A. hydrophila O:34 strains has been found to play an important role in adhesion to HEp-2 cells (31). The O-polysaccharide from one virulent strain of A. hydrophila has been found to contain L-rhamnose and D-glucosamine and to have a backbone structure identical to that of the O-polysaccharide from Aeromonas salmonicida (53). The capsular polysaccharide has been found to be present in some serogroups of A. hydrophila, such as serotypes O:11 and O:34 (29). Two capsule genes from an O:34 strain (orf1 and wcaJ) have been found to confer serum resistance on E. coli K-12 strains (1). However, the genetics and genomic organization of surface polysaccharides of A. hydrophila have not been studied.
Bacterial genome subtraction was performed in our laboratory to examine the genetic differences between virulent (PPD134/91) and avirulent (PPD35/85) strains of A. hydrophila (71). Using four of the PPD134/91-specific genes, we employed long-range and genome-walking PCR to clone the O-antigen and capsule gene clusters from A. hydrophila PPD134/91. These two clusters were further characterized by computational analysis, and the distribution of O-antigen genes among different serogroups of A. hydrophila was surveyed. The effects of purified O-antigen and capsule on serum resistance and adhesion to carp epithelial cells were also examined.
| MATERIALS AND METHODS |
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DNA sequencing and sequence analysis. DNA sequencing was carried out on a PRISM 377 automated DNA sequencer by the dye termination method (Perkin-Elmer Applied Biosystems, Foster City, Calif.). The sequences were edited with the manufacturer's software. Sequence assembly and further editing were carried out with DNASIS DNA analysis software (Hitachi Software, San Bruno, Calif.). BLASTN, BLASTP, and BLASTX sequence homology analyses and a protein conserved-domain analysis (CD search) were performed by using the BLAST network server of the National Center for Biotechnology Information. Transmembrane helices in proteins were predicted by analyses at http://www.cbs.dtu.dk/services/TMHMM.
Long-range PCR and genome walking.
Long-range PCR was performed using Taqplus long polymerase (Stratagene, La Jolla, Calif.). PCRs were carried out under the following conditions: one hold at 94oC for 1 min, followed by 32 cycles of 94oC for 30 s, 56oC for 30 s, and 72oC for 10 to 20 min. GenomeWalker libraries were constructed by using five restriction enzymes (DraI, EcoRV, PvuII, ScaI, and StuI). PCR was performed by using Advantage Genomic Polymerase Mix (Clontech, Palo Alto, Calif.) and by following a two-step cycle protocol: 7 cycles of 2 s at 94oC and 4 min at 72oC; 32 cycles of 2 s at 94°C and 4 min at 67oC. Amplified fragments were cloned into the pGEM-T Easy Vector (Promega, Madison, Wis.). The recombinant DNA molecules were transformed into E. coli DH5
competent cells and sequenced.
Serotyping. The O:18 and O:34 antibodies were prepared, and agglutination tests for serotyping were performed, according to the protocols described previously by Sakazaki and Shimada (50). A. hydrophila strains JCM3980 (O:18) and JCM3996 (O:34) were used to raise antibodies for serotyping.
Examination of the bacterial capsule by electron microscopy. A drop of bacterial culture was placed on a coated grid for 1 min and blotted with filter paper. The glutaraldehyde-ruthenium red-uranyl acetate method was used to stain the cells (36). The sample was dried and observed by transmission electron microscopy.
Preparation of polysaccharides. The O-antigen polysaccharide was isolated and purified by the hot phenol-water extraction procedure (65). The capsular polysaccharide was isolated and purified by the method described by Martinez and coworkers (29).
Serum resistance assay. Naïve tilapia serum was used to perform the serum resistance assay. Bacteria were prepared and treated with 50% tilapia serum as described previously (64). Different concentrations (0.1 to 0.6 µg/ml) of A. hydrophila PPD134/91 O-antigen and capsular polysaccharides were added to the serum in different tubes, followed by addition of washed A. hydrophila PPD35/85 (serum-sensitive strain) cells. The survival of A. hydrophila PPD35/85 was calculated by dividing the number of viable bacteria after a 1-h serum treatment by the number of bacteria before treatment. Bacteria with survival values greater than 1 were considered serum resistant, while those with values below 1 were considered serum sensitive. The data were obtained from three independent experiments.
Adhesion assay. Adhesion assays were performed as described previously with minor modifications (64). Briefly, 72-h-old epithelioma papillosum of carp (Cyprinus carpio) (EPC) cells in 24-well tissue culture plates were washed with Hanks' balanced salt solution (HBSS) and then incubated for an additional 30 min in tissue culture medium containing different concentrations (0.1 to 0.6 µg/ml) of O-antigen and capsular polysaccharides. Bacterial cells were then added and incubated for a further 30 min. To measure the number of bacteria adhering to the monolayers, EPC cells were washed six times with HBSS and then lysed with 1% (vol/vol) Triton X-100 in phosphate-buffered saline, and bacterial numbers were determined by plate counting. Adhesion rates were calculated from the means of at least two wells in triplicate experiments. Final values were expressed as percentages relative to the value for the untreated control (absence of polysaccharides), which was set at 100% (n = 3).
Statistical analysis. All data were expressed as means ± standard errors of the means (SEM). Data were analyzed by one-way analysis of variance and a Duncan multiple-range test (SAS software; SAS Institute). P values of <0.05 were considered significant.
Nucleotide sequence accession numbers. The DNA sequences of the A. hydrophila PPD134/91 O-antigen and capsule clusters and of the JCM3980 (O:18) O-antigen cluster have been deposited in GenBank under accession no. AF146602, AF375657, and AF343089, respectively.
| RESULTS AND DISCUSSION |
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Genetic organization of the O-antigen and capsule clusters. Genes involved in the biosynthesis of surface polysaccharides are generally arranged in clusters. E. coli has several such clusters, including rfa (LPS core), rfb (O-antigen), cps (group I capsules and colanic acid), and kps (group II K capsules) (46). These gene clusters have three classes of genes: those required for the enzymes involved in the biosynthesis pathways of nucleotide sugars, genes for the glycosyltransferases, and genes for oligosaccharide or polysaccharide processing (44). We also observed these three gene classes in the O-antigen and capsule clusters of A. hydrophila PPD134/91.
Pathway genes in the O-antigen cluster. Two sugar synthesis pathways, for rhamnose and mannose, were identified in the O-antigen cluster of A. hydrophila PPD134/91. ORFs 1, 2, 3, 4, and 16 of the O-antigen cluster were homologous to rmlB, rmlA, rmlC, rmlB, and rmlD of other bacteria, respectively (Table 2). The products of rmlA through rmlD are responsible for the biosynthesis of dTDP-L-rhamnose from glucose-1-phosphate (24). Rhamnose is a component of surface polysaccharide and is present in many bacterial polysaccharides. The four rhamnose synthesis pathway genes are usually found as a block in surface polysaccharide gene clusters, and they are highly conserved throughout all species (24, 52). However, the rmlD gene in the A. hydrophila PPD134/91 O-antigen cluster was separated from the other three genes (rmlA through rmlC) of the rhamnose synthesis pathway. There are two ORFs (ORFs 1 and 4) in this cluster which are homologous to rmlB, and they may perform the same function in O-antigen synthesis. Alternatively, it is also possible that ORFs 1 and 4 may function differently in the synthesis of different sugars, since rmlB is also involved in the biosynthesis of two other sugars, dTDP-N-acetylfucosamine (22) and dTDP-N-acetylviosamine (44). However, confirmation of these speculations awaits the determination of the sugar component of the O-antigen and detailed functional analysis of these genes. It is also possible that the O-antigen of strain PPD134/91 contains mannose, because ORFs 13 and 14 encode mannose-1-phosphate guanylyltransferase and phosphomannomutase, respectively. These two proteins work together to synthesize GDP-mannose from mannose-6-phosphate (18).
Transferase genes in the O-antigen cluster. ORFs 8 and 10 were identified as encoding rhamnosyltransferase and mannosyltransferase, respectively, by their sequence similarities (Table 2). They may function in the transfer of the synthesized nucleotide sugar monomers to the growing O-unit.
O acetylation of the O-antigen sugar residues is one of the commonest forms of O-polysaccharide modification. O acetylation of the O-polysaccharide leads to changes in antigenic properties and O-specific phage resistance, thus increasing the polymorphism of the O-antigen (44, 52). ORFs 6, 7, and 11 were found to be homologous to O-acetyltransferases of other bacteria (Table 2). These three genes may play a role in the addition of acetyl groups to different sugar residues or to different positions of the nucleotide sugar. Determination of their distribution by PCR analysis showed that ORFs 6 and 7 were present only in PPD134/91 and the O:18 strain JCM3980 (Table 3). ORF11 was found to be present in PPD134/91, the O:6 strain JCM3968, the O:18 strain JCM3980, the O:34 strain JCM3996, and PPD64/90 by PCR analysis. These results indicated that ORFs 6 and 7 might be O:18 specific. They may be involved in transferring acetyl groups to the positions which define the O:18 serogroup. ORF11 may transfer acetyl groups to the same position of the same sugars of these three O-antigens.
The O-units are synthesized in the cytoplasm and are initiated by transfer of GalNAc or GlcNAc onto a lipid carrier, undecaprenol phosphate (66). ORF15 showed similarity to UDP-glucose lipid carrier transferase or UDP-galactose phosphate transferase for O-antigens or capsules of various bacteria (7, 58). Results of a conserved-domain database search showed that ORF15 was homologous to UDP-galactose-lipid carrier transferase (7) and galactosyltransferase, which catalyzes the addition of galactose to an oligosaccharide precursor or a lipid intermediate (47, 70). Both UDP-galactose-lipid carrier transferase and UDP-glucose lipid carrier transferase were predicted to be integral membrane proteins (66). A search of transmembrane helices showed that the putative protein encoded by ORF15 was an integral membrane protein with three transmembrane domains. ORF15 might initiate the O-unit synthesis of PPD134/91 by transferring galactose or glucose to the lipid carrier. However, further experiments are needed to determine its function in O-antigen synthesis by PPD134/91.
Saccharide-processing genes in the O-antigen cluster. It was noted that only a few gene products of surface polysaccharide genes have extensive potential transmembrane domains (52). In the O-antigen gene clusters, the O-antigen flippase (Wzx) and O-antigen polymerase (Wzy) were found to contain several transmembrane domains. These two genes are species specific, and transmembrane domains are important for their identification. Transmembrane region search results indicated that ORF5 had 12 transmembrane segments, while ORF9 contained 9 transmembrane domains. ORF5 is similar to the O-unit flippases of E. coli (62) and Salmonella enterica (23). We deduced that ORF5 might be O-unit flippase and ORF9 might perform the function of polymerization of the O-antigen polysaccharide in PPD134/91. ORF17 is similar to Cld/Wzz of Yersinia pseudotuberculosis. This gene might be involved in the regulation of O-antigen chain length.
Group II capsule gene cluster in PPD134/91. When strains of A. hydrophila were negatively stained with ruthenium red, capsules were seen as electron-dense reticulated networks surrounding the PPD134/91 (Fig. 2B) and JCM3980 (O:18) (data not shown) cells. However, capsules were not observed for PPD35/85 cells (Fig. 2A). The nucleotide sequences of the PPD134/91 capsule cluster were determined by genome-walking PCR. The first pair of genome-walking primers anneal to the two ends of F79 (Fig. 3). Genome walking was done until the first flanking genes of the two ends of the cluster were found. F79, from our previous genome subtraction experiment (71), was studied due to its low G+C content (30.6%). The gene cluster for capsule synthesis of PPD134/91 can be divided into three regions, like many group II capsule gene clusters of other bacteria, such as E. coli (45), Pasteurella multocida (6, 8), and Neisseria meningitidis (13) (Fig. 3). All of the known capsule assembly systems seen in gram-negative bacteria are represented in E. coli. E. coli therefore has provided a variety of working models on which studies with other bacteria are based (67). In E. coli, the group II capsule cluster comprises three distinct regions. Regions I and II contain the genes kpsDEMT and kpsCS, respectively, and the proteins encoded are involved in the maturation and export of the capsular polysaccharide. Genes in region II are serotype specific and encode proteins for biosynthesis of the polysaccharide.
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Sequence analysis of the PPD134/91 capsule gene cluster. The PPD134/91 capsule cluster is 17,562 bp and includes 13 ORFs transcribed in the same direction (positions 2148 to 19709 in accession no. AF375657). Furthermore, a 2,147-bp sequence upstream of this capsule cluster and a 752-bp sequence downstream were determined. The nucleotide and amino acid sequences were used to search GenBank for homologues so that their possible functions could be deduced. The capsule cluster was flanked by a gene (ORFU') homologous to an unknown V. cholerae gene (vc1870) upstream and a gene (ORFD') homologous to an arginine/ornithine transport system permease gene (aotM) downstream. A possible transcriptional terminator with a hairpin loop structure (positions 19733 to 19761 in accession no. AF375657) was also found downstream of ORFM. The whole cluster can be divided into three regions as described below (Fig. 3 and Table 4).
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Region II of the PPD134/91 capsule gene cluster consists of seven ORFs (ORFs E through K). ORFs H and I and ORFs J and K overlap one another by 71 and 4 bp, respectively. The rest of the ORFs are separated from one another by 7 bp (for ORFs D and E) to 68 bp (ORFs F and G). ORFs F and G showed high similarity over their entire lengths with genes encoding UDP-N-acetyl-D-glucosamine 2-epimerase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase of other bacteria, respectively. These two enzymes catalyze the synthesis of UDP-ManNAcA from UDP-GlcNAc. It is reasonable to deduce that the capsule of PPD134/91 contains UDP-ManNAcA. ORFE was homologous to the P. multocida capsule biosynthesis gene encoding BcbI, whose function is still unknown (6). The functions of ORFs E, H, and J cannot be proposed, since there are no homologous genes whose functions are known in the existing GenBank database. ORFI was similar to glycosyltransferase of Streptomyces coelicolor (28). ORFI either could be a transferase gene responsible for the transfer of the UDP-ManNAcA monomer to the growing polysaccharide unit or could be involved in another nucleotide sugar biosynthesis pathway together with other unknown genes present in this cluster.
Purification and functional study of the surface polysaccharides of PPD134/91. O-antigen and capsular polysaccharides were purified from A. hydrophila PPD134/91. A serum resistance assay and an adhesion assay were performed with and without the addition of different concentrations of polysaccharides (0.1 to 0.6 µg/ml). A. hydrophila PPD134/91 was serum resistant, and the survival index was calculated as 2.22 ± 0.18 (n = 3) after a 1-h treatment with tilapia serum, while PPD35/85 was serum sensitive (survival index, 0.019 ± 0.002). The survival ability of PPD35/85 in tilapia serum increased with increasing concentrations of O-antigen and capsular polysaccharides, but at different levels (Fig. 4). With the addition of 0.6 µg of purified O-antigen and capsular polysaccharides/ml, the survival index of A. hydrophila PPD35/85 increased to 0.27 ± 0.02 (14.2-fold) and 0.53 ± 0.02 (27.9-fold) (n = 3), respectively. The abilities of various surface polysaccharides to inhibit or enhance the adherence of A. hydrophila PPD134/91 to EPC cells were also examined. Adhesion assay results showed that both purified O-antigen and capsular polysaccharides failed to affect the adherence of PPD134/91 cells to EPC cells. When 0.1 and 0.6 µg of purified O-antigen polysaccharide/ml were added, the adherence percentages of PPD134/91 were 102.2% ± 0.1% and 100.5% ± 0.1% (n = 3) relative to the untreated control, respectively. When purified capsular polysaccharide was added at 0.1 and 0.6 µg/ml, the adherence percentages of PPD134/91 were 102.1% ± 0.1% and 104.3% ± 0.1% (n = 3), respectively.
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In conclusion, we have presented in this paper the sequences and genetic organization of A. hydrophila PPD134/91 surface polysaccharide gene clusters. We have shown that this strain may belong to the O:18 serogroup and that the capsule organization is similar to that of the group II capsule of other bacteria. We have also demonstrated that both O-antigen and capsular polysaccharides of PPD134/91 are capable of conferring resistance to serum-mediated killing on the avirulent strain. Although there are several genes in both gene clusters for which functions cannot be deduced, our study should facilitate understanding of the genetics of the surface polysaccharides of Aeromonas and their roles in pathogenesis.
| ACKNOWLEDGMENTS |
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We thank Peter Howard and Shashikant Joshi for constructive criticism.
| FOOTNOTES |
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