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Infection and Immunity, December 2003, p. 6712-6720, Vol. 71, No. 12
0019-9567/03/$08.00+0 DOI: 10.1128/IAI.71.12.6712-6720.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
1
4)-Linked N-Acetyl-D-Glucosamine 1-Phosphate Capsule of Neisseria meningitidis Serogroup X
Department of Medicine,1 Department of Microbiology and Immunology, Emory University School of Medicine,3 Meningitis and Special Pathogens Branch, Centers for Disease Control and Prevention, Atlanta, Georgia,4 Department of Veterans Affairs Medical Center, Decatur, Georgia2
Received 12 May 2003/ Returned for modification 8 August 2003/ Accepted 3 September 2003
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1
4)-linked
N-acetyl-D-glucosamine 1-phosphate capsule of
Neisseria meningitidis serogroup X was defined. The
biosynthesis gene cassette was a
4.2-kb region located between
ctrA of the capsule transport operon and galE, which
encodes the UDP-glucose-4-epimerase. This location was identical to the
locations of the biosynthesis cassettes in other meningococcal
serogroups. Three open reading frames unique to meningococcus serogroup
X were identified. Deletion-insertion mutation and colony
immunoblotting confirmed that these three genes were essential for
serogroup X capsule expression, and the genes were designated
xcbA, xcbB, and xcbC (serogroup X
capsule biosynthesis). Reverse transcriptase PCR
indicated that the xcbABC genes form an operon and are
cotranscribed divergently from ctrA. XcbA exhibited 52%
amino acid similarity to SacB, the putative capsule polymerase of
meningococcus serogroup A, suggesting that it plays a role as the
serogroup X capsule polymerase. An IS1016 element was found
within the intergenic region separating ctrA and xcbA
in multiple strains, and this element did not interfere with capsule
expression. |
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Sporadic cases of meningococcal disease caused by serogroup X meningococci have been reported in both industrialized countries (15, 18, 28, 34) and African countries (11, 31). However, recently, large serogroup X meningitis outbreaks in Niger (5, 10) and Ghana (13) have been reported. A genetic diversity study of N. meningitidis serogroup X isolates in which multilocus sequence typing and pulsed-field gel electrophoresis were used showed that most carrier and disease isolates recovered in the last 30 years in the African meningitis belt belonged to the same clonal group (12), while most European and American isolates were highly diverse. In a longitudinal carriage study designed to investigate the dynamics of meningococcal carriage during an interepidemic period in Ghana, the disappearance of the epidemic serogroup A strain was accompanied by a sharp increase in nasopharyngeal carriage of serogroup X meningococci (13). The carriage rate reached 18% of the population sampled, and this coincided with an outbreak of serogroup X disease. Serogroup X meningococci have also been reported to be very efficient in colonizing military recruits in the United Kingdom (21).
The capsular
polysaccharides of serogroup B, C, Y, and W135 meningococci are
composed of sialic acid derivatives. Serogroup B and C meningococci
express (
2
8)- and (
2
9)-linked
polysialic acid, respectively
(3,
26), while alternating
sequences of D-glucose or D-galactose and sialic
acid are expressed by serogroup Y and W135 N. meningitidis. In
contrast, the capsule of serogroup A meningococci is composed of
(
1
6)-linked N-acetylmannosamine 6-phosphate
(27), while N.
meningitidis serogroup X synthesizes capsular polymers of
(
1
4)-linked N-acetylglucosamine 1-phosphate
(4). In order to better
understand the evolution of the meningococcal capsule and its role in
pathogenesis, the genetic basis of meningococcal capsule expression in
serogroups A, B, C, Y, and W135 has been defined previously
(37-39).
Here we describe the first characterization of a capsule biosynthesis
locus in N. meningitidis serogroup
X.
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were used as the host strains for
cloned PCR products and recombinant plasmids created during this
study. |
View this table: [in a new window] |
TABLE 1. Strains,
plasmids, and primers used in this study
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Nucleic acid purification. Chromosomal DNA was isolated from N. meningitidis by the following procedure. Bacteria were scraped from one confluent overnight growth plate and resuspended in 10 ml of DNA extraction buffer (10 mM NaCl, 20 mM Tris-HCl [pH 8.0], 1 mM EDTA). Proteinase K (Fisher Scientific, Pittsburgh, Pa.) was added to a final concentration of 100 µg/ml, and the suspension was incubated for at least 6 h at 50°C. An equal volume of phenol-chloroform (1:1) was then added, and the solution was mixed on a rocker for 10 min at room temperature; this was followed by 20 min of centrifugation at 10,000 x g. The upper aqueous layer was poured into a clean tube, and centrifugation was repeated. Chromosomal DNA was spooled out of the aqueous layer after addition of 0.1 volume of 3 M sodium acetate and 2 volumes of ethanol. The DNA was rinsed with 70% ethanol, air dried briefly, and then suspended in 2 ml of 10 mM Tris [pH 8.0]-1 mM EDTA. Total RNA was prepared from bacteria grown in GC broth to the mid-log phase by using an RNeasy mini kit (Qiagen, Valencia, Calif.) according to the manufacturer's protocol. Purified total RNA was further treated with RNase-free DNase to remove contaminating chromosomal DNA. PCRs performed with the total RNAs obtained before and after DNase treatment as templates confirmed that the RNA preparation was free of DNA contamination.
PCR, RT-PCR, and colony PCR. PCRs were performed as previously described (39). A reverse transcriptase PCR (RT-PCR) assay was performed by using a GeneAmp RT-PCR kit (Applied Biosystems, Roche) and the protocol recommended by the manufacturer. A single colony from a plated culture was collected with a sterile toothpick and suspended in sterile water, and 2 µl of the suspension was used as a template for colony PCR performed by using the standard conditions (40).
Construction
of pYT302.
The PCR product
generated with primers LJ8 and galE1 by using chromosomal DNA from
meningococcal serogroup X strain M7575 was cloned into the pCR2.1
vector with a TOPO-TA cloning kit (Invitrogen) to obtain pTA7575. This
fragment was subsequently released by EcoRI digestion and
subcloned into the EcoRI site of pUC18 to obtain pUC7575.
After double digestion of pUC7575 with NcoI and EcoRV
to remove approximately 2.4 kb, the plasmid was gel purified, blunted
with the Klenow fragment, and ligated to the
cassette
obtained from SmaI digestion of pHP45
(29). Transformants were
selected with spectinomycin, and insert-containing clones were
identified by colony PCR. PCR and direct sequencing analysis of the
resulting plasmid, pYT302, confirmed correct deletion and insertion of
the
cassette.
Southern blotting. PCR products were used as templates to generate random primed digoxigenin-labeled probes with the Genius nonradioactive DNA labeling and detection system (Boehringer Mannheim, Indianapolis, Ind.). DNA hybridization was performed by following the manufacturer's suggested procedure (Boehringer Mannheim).
Whole-bacterium immunoblotting. A detailed immunoblot procedure in which whole cells are used has been described previously (22). Briefly, N. meningitidis cells from plate-grown overnight cultures were suspended in GC broth, and the optical density at 550 nm was determined. Sequential dilutions were made to obtain the required numbers of organisms in 50-µl aliquots. The cell suspensions were applied to a prewetted nitrocellulose membrane by using a BioDot apparatus (Bio-Rad). The membrane was subsequently processed by using the previously described procedure (22). Before the membrane was probed, polyclonal antiserum to N. meningitidis serogroup X (Meningitis and Special Pathogens Branch, Centers for Disease Control and Prevention) was preabsorbed with a suspension of strain M328::302 meningococci to remove nonspecific antibodies that recognize other meningococcal surface antigens. The antiserum was used at a 1:250 dilution. Alkaline phosphatase-conjugated anti-rabbit immunoglobulin G/M monoclonal antibody (ICN/CAPPEL, West Chester, Pa.) was used at a 1:2,500 dilution.
Serum bactericidal
assay.
A microdilution
serum bactericidal assay was performed by using the procedure described
by Kahler et al. (23).
Pooled normal human serum was used at a 10% (vol/vol) dilution.
The percent survival (log10) was calculated by dividing the
number of CFU per milliliter obtained after incubation in serum (at 15
min) by the number of CFU per milliliter at time zero. A Student's
t test with a two-tailed hypothesis was used to determine the
significance (P
0.05) for two
variables.
Nucleotide sequence accession numbers. The nucleotide and predicted amino acid sequences of the capsule biosynthesis genes derived from strain M7575 have been deposited in the GenBank database under accession number AY289931. The GenBank accession number for the intergenic region sequence from strain M0328 is AY289932.
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4.2-kb DNA fragment was obtained from strain
M7575, while the other five strains yielded
5-kb PCR products.
Two independent PCR products from M7575 (RN7-galE1 and CN1-galE1) were
cloned into the pCR2.1 vector, and the resulting plasmids were used as
templates to obtain a nucleotide sequence by primer walking
(20). The entire sequence
was confirmed by 2x coverage sequencing of the two independent
PCR clones. In addition, overlapping PCR amplification was performed to
determine the location of the additional
800 bp present in the
five serogroup X strains that produced larger PCR products than M7575
produced. A larger PCR product was obtained when primers CN1 and CN11
were used for amplification (Fig.
1A). Nucleotide sequencing of the larger CN1-CN11 PCR product revealed the
presence of an intact IS1016 element
(8). The IS1016
open reading frame (ORF) was predicted to encode a 217-amino-acid
protein homologous to the IS1016C2 transposase and was
oriented in the same direction as ctrA (Fig.
1A). There was no
difference in the level of capsule expression between strains with and
without IS1016 when they were examined by colony
immunoblotting (data not shown).
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FIG. 1. (A)
Schematic diagram of the capsule biosynthesis gene cassette in N.
meningitidis serogroup X. Three ORFs, xcbA,
xcbB, and xcbC, were identified and were transcribed
divergently from the first gene of the capsule transport operon,
ctrA. An IS1016 element (indicated by an open box
with the arrow showing the transcriptional direction of the
transposase) was found in some strains. The locations of nucleotide
primers used in this study are indicated by arrowheads. (B)
Nucleotide sequence of the intergenic region between ctrA and
xcbA of strain M0328 (accession number
AY289932).
The translational start codons of ctrA and xcbA are
indicated by boldface type and underlining. The sequence of the
IS1016 element is indicated by lightface type. A 10-bp
duplication associated with the IS1016 insertion is enclosed
in a box. The arrows indicate an imperfect 18-bp inverted repeat
flanking the IS1016 element. Probable promoters (-10
and -35) for xcbA in the strains containing
IS1016 in this region are indicted by dotted lines above the
sequence, while the putative xcbA promoter in the strain
without IS1016 is indicated by the dashed line above the
sequence. The putative ctrA promoter sequences are indicated
by
underlining.
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Both nucleotide and predicted protein sequences were used to search the GenBank database. XcbA exhibited significant homology to the following three meningococcal proteins closely associated with meningococcal capsule loci: a hypothetical protein (P value, 2e-68; 40% identity and 58% similarity) encoded by a gene located between rfbD and lipA in the capsule locus of serogroup B strain B1940 (16), LcbA (P value, 2e-66; 38% identity and 53% similarity), and SacB (P value, 2e-46; 31% identity and 52% similarity) (38). LcbA, a 366-residue protein, is encoded by the first gene of a gene cluster similarly flanked by ctrA and galE in serogroup L (GenBank accession number AF112478). It has been proposed that LcbA is involved in capsule biosynthesis; however, its function and role in capsule expression have not been confirmed. SacB (545 residues) is the putative capsular polymerase encoded by the serogroup A capsule biosynthesis gene cluster (38), and a sacB mutant is nonencapsulated (38). An alignment of the XcbA, LcbA, and SacB sequences is shown in Fig. 2. The homology is spread throughout the protein sequences; no known domain or motif was identified. In addition, four conserved hypothetical proteins in Streptomyces coelicolor A3, a putative capsular polysaccharide synthesis protein in Aeromonas hydrophila, and a capsular polysaccharide synthesis protein (Cps1A) in Actinobacillus pleuropneumoniae also exhibited significant protein sequence similarity to XcbA (P value range, 2e-59 to 2e-41). However, the functions of these proteins have not been demonstrated.
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FIG. 2. Alignment
of the amino acid sequences of XcbA, LcbA, and SacB generated by the
Clustal W method
(45).
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FIG. 3. Schematic
diagram of the capsule genetic loci of N. meningitidis
serogroup X and serogroup B, showing the similarity of the two
serogroups.
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FIG. 4. RT-PCR
demonstrating that xcbA, xcbB, and xcbC
constitute an operon. An xcbC internal primer, CN4, was used
to generate cDNA from total RNA isolated from strain M7575. Equivalent
RT reactions without RT added (-RT) were also performed to
check for possible chromosomal DNA contamination. The reverse
transcription reaction mixtures were subsequently used as templates in
PCR amplifications with primers internal to xcbA (primers CN2
and CN10), xcbB (primers CN9 and CN6), and xcbC
(primers CN4 and CN8). PCR products generated with chromosomal DNA were
used to assess the expected product
size.
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(Sp) cassette.
This mutation resulted in 3' truncation of xcbA,
5' deletion of xcbC, and complete deletion of
xcbB. The resulting plasmid construct, pYT302, was used to
transform the six serogroup X meningococcal isolates. Transformants
selected with spectinomycin were successfully generated in strains M328
and M2526, and deletion and insertion of the
cassette were
confirmed by colony PCR performed with primers CN2 and CN4 and by
Southern blot analyses (data not shown). Because pYT302 contained the
4.2-kb xcbABC DNA region without IS1016 from strain
M7575, two classes of transformants were obtained in strains carrying
IS1016; in one of these classes IS1016 was lost
during recombination. Transformants M328::302 and
M2526::302, carrying IS1016 in the
ctrA-xcbA intergenic region, were tested for capsule
expression by whole-bacterium immunoblotting by using serogroup X
capsule-specific polyclonal antiserum (Fig.
5). Neither M328::302 nor
M2526::302 expressed capsular polysaccharides,
further indicating that the xcbABC gene cluster is essential
for capsule expression.
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FIG. 5. Whole-bacterium
immunoblot for N. meningitidis serogroup X. Aliquots
containing 1 x 108, 1 x 107, and
1 x 106 cells of serogroup X meningococcal strains
M328 and M2526 and the capsule biosynthesis insertion-deletion mutants
of these strains, M328::302 and
M2526::302, were dried on a nitrocellulose membrane
and probed with serogroup X capsule-specific polyclonal antiserum.
Serogroup A strain F8229 was included as a negative
control.
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FIG. 6. Human
serum bactericidal assays. N. meningitidis serogroup X strains
M328 and M2526 and the capsule biosynthesis insertion-deletion mutants
of these strains were exposed to 10% pooled normal human serum
(solid bars) or heat-inactivated (56°C, 30 min) human serum
(gray bars). The percentage of survival (y axis) is
indicated by using a log scale (n 2 for
each variable). The bars indicate means, and the error bars indicate
standard
deviations.
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1
4)-linked N-acetylglucosamine
1-phosphate, is biochemically similar to the serogroup A capsule,
(
1
6)-linked N-acetylmannosamine 1-phosphate.
The overall organization of the capsule transport and biosynthesis
genes of serogroup X meningococci, as defined in this study, showed
similarity to the organization in other meningococcal serogroups
characterized to date (2,
44). The capsule locus is
located near gltS, as it is in other meningococci. In
addition, xcbABC, sacABCD of N. meningitidis
serogroup A, and synABCD of N. meningitidis serogroup
B have much lower G+C contents (35 to 39, 24 to 35, and 28 to
41%, respectively) than the whole meningococcal genome
(52%) (44). The
difference in G+C contents suggests that horizontal gene
transfer occurred.
The intergenic regions separating the
divergently transcribed transport and biosynthesis genes in serogroups
A, B, C, Y, and W135 have been characterized in detail and have similar
organizations of transcriptional control
(37,
38,
46). The sialic
acid-containing serogroups (serogroups B, C, Y, and W135) utilize
identical 134-bp intergenic regions to initiate transcription
(37,
46), while a completely
different 218-bp sequence separates the transport and biosynthesis gene
clusters in N. meningitidis serogroup A
(38). The intergenic
regions of these serogroups contain overlapping promoters for
controlling the divergent operons. The nucleotide sequence of the
266-bp intergenic region separating the divergently transcribed
ctrA and xcbA genes differs from that found in
serogroup A or serogroup B. Interestingly, expression of the serogroup
X capsule was not affected by the presence of an IS1016
element in the intergenic region (Fig.
1). IS1016 may
have inserted into the intergenic region after acquisition of the
capsule locus in strain M328. Alternatively, IS1016 may
mediate acquisition of the capsule genes and may have been lost in some
strains. IS1016 was originally described as flanking the
capsule locus of H. influenzae, and it was proposed that this
element mobilizes the
17-kb capsule gene cluster as a compound
transposon in the H. influenzae chromosome
(24,
25). Many virulent H.
influenzae serotype b strains carry a duplicated capsule locus,
and flanking IS1016 elements may facilitate reversible gene
amplification through unequal homologous recombination events
(25). It has been noted
that the presence of outwardly directed promoters in an insertion
element or the formation of hybrid promoters between an insertion
element and host DNA (14)
may provide and/or enhance expression of certain genes, thus conferring
a certain survival advantage. In the case of N. meningitidis
serogroup X, predicted promoters resembling a
70 consensus
sequence can be identified in the intergenic region both within and
outside the IS1016 that could initiate transcription of
xcbA (Fig. 1B),
without interference with the putative ctrA promoter. There
was no difference in the level of serogroup X capsule expression
between strains with IS 1016 and strains without
IS1016, suggesting that IS1016 does not affect
capsule expression. Another insertion element, IS1301, has
been shown to mediate on-off switching of capsule expression through
reversible insertion and excision within the coding sequence of the
first biosynthesis gene, synA, in a serogroup B strain
(17).
The serogroup
X capsule is a polymer of (
1
4)-linked
N-acetylglucosamine 1-phosphate. N-Acetylglucosamine
is a common precursor of important bacterial components, such as
peptidoglycan [(
1
4)-linked
N-acetylglucosamine (GlcNAc) and N-acetylmuramic
acid]. The coupling of a C-4 hydroxyl group in
N-acetylmuramic acid and the C-1 carbon in UDP-GlcNAc, along
with the release of UDP, generates the disaccharide precursor of the
peptidoglycan. Analogously, coupling of two UDP-GlcNAc molecules
between the C-4 hydroxyl of one UDP-GlcNAc and the C-1 phosphate of the
other UDP-GlcNAc through the energy provided by the hydrolysis of
UMP is predicted to produce the (1
4) phosphodiester
linkage of the serogroup X capsule. A similar sequence of
reactions has also been proposed for capsule expression in serogroup A
meningococci, whose capsular structure is (
1
6)-linked
N-acetylmannosamine (ManNAc) 1-phosphate
(38). SacB is believed to
be responsible for the polymerization of UDP-ManNAc
(38), creating the
phosphodiester bond between positions 1 and 6 of individual UDP-ManNAc
molecules through the release of UMP. XcbA is probably the capsular
polymerase for serogroup X meningococci, considering its homology to
SacB. XcbA also showed sequence similarity to the putative biosynthesis
protein, LcbA, of N. meningitidis serogroup L, which expresses
a capsule composed of (
1-P
3)-linked trisaccharide of
GlcNAc.
In summary, the genetic basis of capsule expression in serogroup X meningococci was defined. Like the capsules of other meningococcal serogroups (23), the serogroup X capsule is critical for resistance to normal human serum. With the identification of the unique serogroup X biosynthesis sequence, molecular tools for diagnosis and monitoring the epidemiology and emergence of serogroup X disease can be developed. In addition, this study provided additional information on the evolution of the capsule biosynthesis region of group II encapsulated bacterial pathogens.
This work was supported by National Institute of Allergy and Infectious Diseases grant AI33517 to D.S.S. and by the Meningitis and Special Pathogens Branch of the Centers for Disease Control and Prevention.
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2
8)-linked
polysialic acid capsule and lipooligosaccharide structure both
contribute to the ability of serogroup B Neisseria
meningitidis to resist the bactericidal activity of normal human
serum. Infect. Immun.
66:5939-5947.
2
8)-linked polysialic acid capsule on adherence of
Neisseria meningitidis to human mucosal cells.J. Infect. Dis.
167:475-479.[Medline]
1
6)-linked
N-acetyl-D-mannosamine-1-phosphate capsule of
serogroup A Neisseria meningitidis. J.
Bacteriol.
180:1533-1539.
2
8)-linked polysialic acid capsule of serogroup B
Neisseria meningitidis. J. Bacteriol.
176:1530-1534.
-2,3-sialyltransferase mutant: the role of lipooligosaccharide
sialylation for serum resistance in serogroup B meningococci.Med. Microbiol. Immunol.
186:159-166.[CrossRef][Medline]
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