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Infection and Immunity, June 2003, p. 3392-3401, Vol. 71, No. 6
0019-9567/03/$08.00+0 DOI: 10.1128/IAI.71.6.3392-3401.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
L. Z. Barber,
P. Wigley, S. Muhammad, M. A. Jones, M. A. Lovell, S. Hulme, and P. A. Barrow*
Institute for Animal Health, Compton Laboratory, Compton, Newbury, Berkshire RG20 7NN, United Kingdom
Received 4 December 2002/ Returned for modification 29 January 2003/ Accepted 18 March 2003
| ABSTRACT |
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| INTRODUCTION |
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Much Salmonella research has focused on serovar Typhimurium infection in mice, which provides a convenient model, although chickens (5, 33) and calves (60) have provided alternative, more relevant hosts for serovars Typhimurium, Gallinarum, and Dublin. Work with all these different models has identified many Salmonella genes required for virulence and particularly for intracellular survival and multiplication, many of which are also regarded as "housekeeping genes." They include genes associated with environmental sensing and transcriptional regulation, such as cya/crp, ompR/envZ, phoP/phoQ (11, 19, 47), rpoS (21), and rpoE (31) and genes that influence DNA supercoiling, including hns (28) and hupA (57). Bacterial stress induced by the intracellular environment is indicated by the requirement for genes such as htrA, clpB, and dksA (12, 57, 63). Nutrient biosynthesis genes, including those for purines, pyrimidines, and aromatic amino acids, are also required for full virulence (22, 30). More recently, mutations in glutamine biosynthesis and transport have been found to be attenuating for serovar Typhimurium in mice (36). Other genes involved in the uptake of Fe2+, Mg2+, and Cu2+ have also been found to be associated with virulence in Salmonella and other bacteria (29, 61).
Bacteria can derive energy from carbon sources by respiration which involves electron transport and an electron acceptor, such as oxygen, or by fermentation. Respiration in Escherichia coli and Salmonella enterica has been reviewed by Gennis and Stewart (25). NADH is an important primary electron donor for electron transport. For E. coli and other bacteria, electrons are transferred from NADH to the NADH dehydrogenase I complex in the cytoplasmic membrane and then to quinones. Electrons are then transferred to a penultimate electron acceptor, such as the two cytochrome oxidases o and d, before being transferred to a terminal electron acceptor, such as oxygen. Electron transport is coupled to the transfer of protons out of the cell across the cytoplasmic membrane, generating a proton gradient (27). Bacteria can use substrates other than NADH, such as succinate, pyruvate, or lactate, as primary electron donors and a number of alternative electron acceptors, such as dimethyl sulfoxide, fumarate, and nitrate, in addition to oxygen. E. coli, Salmonella, and other bacteria possess two cytochrome oxidases, d and o (25). The cytochrome d oxidase is active under low oxygen tensions but is less energy efficient, transporting only one proton per electron compared to two transported by cytochrome o oxidase under higher oxygen tensions. The proton gradient generated by electron transport is used by the F0F1 proton-translocating ATPase for ATP synthesis, flagella rotation, and nutrient uptake (10, 45). During fermentative growth, the bacterial F0F1 proton-translocating ATPase hydrolyzes ATP to generate the proton gradient. The structure and function of the F0F1 ATPase of E. coli has been reviewed (27, 45).
Despite the extensive understanding of bacterial electron transport and proton translocation, little is known about the relative contribution of the relevant proton-translocating enzymes to the growth and survival of pathogens in the host in either the gut or the intracellular environment. We have sought to initiate such studies by determining the involvement of some of these protein complexes in the virulence of serovars Typhimurium and Gallinarum in chickens and of serovar Dublin in mice. We mutated genes crucially affecting enzyme activity, including nuoG, which codes for a key polypeptide of the NADH dehydrogenase I complex (2, 20), cyoA and cydA, which code for subunits of cytochrome o and cytochrome d oxidases, respectively (25), and atpB and atpH, which code for polypeptides of the F0 and F1 components, respectively, of the F0F1 proton-translocating ATPase (27).
| MATERIALS AND METHODS |
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Construction of mutants. Mutations in serovars Typhimurium, Gallinarum, and Dublin were produced in a similar way. The DNA homologies were such as to permit use of the same inactivated serovar Typhimurium sequences in serovars Gallinarum and Dublin. Construction of the nuoG and atp defined mutations has been described elsewhere (67). These mutations are polar and were constructed by replacement of several hundred nucleotides of the relevant open reading frame (ORF) with a Kmr GenBlock insertion cassette (Amersham-Pharmacia Biotech). These were intended to block the function of each protein complex rather than the individual gene, and polarity within each operon was, therefore, of lesser concern. The nuoG gene is the sixth gene in a single large, complex operon of 14 genes (nuoA to nuoN). Mutations in this gene, which encodes a structural-regulatory subunit, have been shown to abolish activity of the whole NADH dehydrogenase I complex (2). Both the F0 and F1 subunits of the proton pump would be inactivated by the polar mutation in atpB, whereas the atpH mutation prevents biosynthesis of the F1 subunit only. However, since the F0 subunit pore opens only upon interaction with the F1 subunit, these mutants ought to behave similarly (27).
The cyoA mutation was constructed by PCR amplification from the serovar Typhimurium chromosome. Oligonucleotide primers were chosen that allowed a fragment to be amplified in two parts before being joined together by an additional overlap extension PCR using the same two parts as a template. This allowed the introduction of a KpnI site in the middle of the fragment and a SalI and XbaI site at each end. The construct was then incorporated into the suicide vector pDM4 (47), and the Kmr GenBlock insertion mutant was introduced into the KpnI site. The construct thus consisted of a fragment from between bases 108 and 728 of the cyoA ORF with the Kmr GenBlock inserted after base 438.
An Spcr-Strr (spectinomycin and streptomycin resistance) insertion was made in the cydA gene in the same way, but this time the construct included bases 87 to 725 inclusive of the ORF. The cassette was in pHP45
Spc, obtained from H. Krisch, Département de Biologie Moleculaire, Université de Genèva, Switzerland. A single base-pair change generated a BamHI site in the middle of the fragment that enabled an Spc-Str resistance cassette to be inserted after base 406 of the ORF, and XbaI sites were incorporated into each end of the fragment for cloning into pDM4.
These pDM4 derivatives were maintained in E. coli strain SM10
pir (Table 1) (52) and were introduced into the recipient Salmonella strains by conjugation. Transconjugants were isolated on selective medium supplemented with either streptomycin or kanamycin (25 µg/ml), and their sensitivity to chloramphenicol was then tested to identify those that resulted from a double recombinational crossover event that had not incorporated any pDM4 DNA. The mutants were checked by PCR using primers from the 3' end of the cassette and the 5' end of the structural gene which generated a single DNA fragment in each of the mutants but not in the parent strain.
The phenotypes of these mutations were also checked. In all four operons, nuoA to nuoN, cydA and cydB, cyoA to cyoE, and atpA to atpI, no other genes are present which are associated with functions other than that of these genes. The nuoG mutation in serovar Typhimurium abolished NADH dehydrogenase activity (67). Under aerobic conditions the cyd and atp mutants grew more slowly than the parent strain on LB agar and minimal salts agar with glucose as the sole carbon source, producing much smaller colonies (18). Under anaerobic conditions, with glucose as the carbon source and no exogenous electron acceptor, very little growth of the atp mutants occurred and they were nonmotile (27). Motility and an increase in growth yield were obtained by the addition of nitrate to these anaerobic cultures, suggesting that these mutants were able to generate a proton gradient in the presence of this oxidizing agent (27). The atp mutants also grew poorly with citrate as the sole carbon source (45).
All mutants were checked for nonagglutination with 5% acriflavine-HCl to confirm that their lipopolysaccharide remained intact.
Experimental animals. For virulence studies, unsexed, specified-pathogen-free Rhode Island Red chickens were used from the Institute for Animal Health flock. These are susceptible to systemic salmonellosis. They were housed in metal cages held at 30°C at 1 day of age, decreasing to 20°C at 3 weeks of age. They were reared on a vegetable-based protein diet (Special Diet Services, Manea, United Kingdom). Chickens were used either within 24 h of hatching (referred to as newly hatched) or as 3-week-old birds. Mice were BALB/c females (Charles River Laboratories, Manston, United Kingdom) weighing 20 g (approximately 6 weeks old).
Virulence assays. Virulence was assessed by oral inoculation of groups of animals with 0.1 ml (newly hatched chickens) or 0.3 ml (3-week-old chickens) of an undiluted culture or with 50 µl of a culture concentrated 10-fold by centrifugation (5, 66). Virulence in mice was assessed by oral inoculation with 50-µl volumes of a broth culture diluted to contain 104 CFU in this volume (11, 12). Morbidity and mortality were recorded over a 3-week period. Animals showing signs typical of salmonellosis were killed humanely. Signs in chickens included anorexia and disinclination to drink, standing with head and wings lowered, and caked feces around the vent. Mice became unsteady and had a "starry" coat. These signs are generally predictive of severe disease and death if the animals are left.
Intestinal invasiveness of serovar Typhimurium mutants in newly hatched chickens was assessed by counting viable bacteria in the ceca, spleen, and liver at intervals after oral inoculation (5). This was done because chickens have no lymph nodes.
Survival and multiplication in the organs were assessed by counting viable bacteria in organ samples at 1-h and longer intervals after intramuscular (gastrocnemius muscle) inoculation of 2-day-old chickens with 104 CFU (5).
Bacteria were counted on Brilliant Green agar (CM 263; Oxoid, Basingstoke, United Kingdom) containing sodium nalidixate (20 µg/ml) and novobiocin (1 µg/ml).
Invasion and persistence of Salmonella in primary chicken kidney cells. Chick primary kidney cells (CKC) were prepared from the kidneys of 1- to 2-week-old Rhode Island Red chicks as previously described (6). Bacterial cultures were diluted in LB to108/ml, and 100 µl was added to the CKC to give a multiplicity of infection of 10 bacteria per chicken kidney cell. Cells were incubated for 1 h at 37°C in an atmosphere including 5% CO2. Extracellular bacteria were then killed by incubating cells for 1 h at 37°C in Dulbecco's modified Eagle medium (DMEM) containing 100 µg of gentamicin (Sigma)/ml. To determine bacterial invasion, infected CKCs were washed three times in Hanks' buffered saline solution (HBSS) and then lysed with 1 ml of 1% Triton X-100 (Sigma) for 30 min at 37°C. Viable counts of the intracellular bacteria in the lysate were made on LB agar. To determine intracellular persistence, cells were washed three times in HBSS and then incubated in RPMI 1640 containing 25 µg of gentamicin/ml to prevent growth of any bacteria released from lysed cells. Cells were incubated at 37°C in an atmosphere including 5% CO2 for up to 24 h and then lysed, and counts were determined as described above.
Invasion and persistence of mutants of serovar Typhimurium in chick splenic macrophages. Splenic macrophages were isolated from 3-day-old Rhode Island Red chicks through a modification of the methods of Wigley et al. (64). Briefly, chicks were killed by neck dislocation, and the spleens were removed aseptically and placed in 2 ml of ice-cold DMEM. A cell homogenate was formed by passing the tissue through a 70-µM-pore-size cell strainer (Becton Dickinson). The cell homogenate was seeded at 5 x 106 cells ml in 100-µl volumes in a 96-well cell culture tray. Cells were incubated at 42°C under 5% CO2 for 4 h to allow adherence of macrophages. Cells were then washed vigorously four times with DMEM to remove nonadherent cells. This resulted in a monolayer of 90 to 95% macrophages at approximately 5 x 104/ml. Invasion and persistence of the serovar Typhimurium parent strain and cydA, cyoA, nuoG, and atpB mutant strains in chick macrophages was determined at a multiplicity of infection of 10. Extracellular bacteria were killed by incubating cells for 1 h at 37°C in DMEM containing 100 µg of gentamicin (Sigma)/ml. To determine the extent of bacterial invasion, infected monolayers were washed three times in HBSS and then lysed with 1 ml of 1% Triton X-100 (Sigma) for 30 min at 37°C. Viable counts of the intracellular bacteria in the lysate were made on LB agar. To determine intracellular persistence, cells were washed three times in RPMI 1640 and then incubated in RPMI 1640 containing 25 µg of gentamicin/ml to prevent growth of any bacteria released from lysed cells. Cells were then incubated at 37°C in an atmosphere including 5% CO2 for up to 24 h and then lysed, and counts were determined as described above. Since numbers of macrophages isolated from chicks are low, we determined persistence at 4 and 24 h postinvasion only.
Invasion and persistence of mutants of serovar Typhimurium in the mouse macrophage-like cell line, J774A.1. This was performed as described by Bowe and Heffron (9). J774A.1 cells were obtained from the European Collection of Animal Cell Cultures (Salisbury, United Kingdom) and were grown as monolayers in 12-well cell culture trays using DMEM containing 10% fetal calf serum and 1 M glutamine (DMEM+). Bacterial cells for the assay were grown statically at 37°C overnight, harvested, resuspended in 20x volume normal mouse serum, and incubated at 37°C for 30 min. Antibiotic-free DMEM+ was then added to the bacterial cells before inoculating them onto the macrophages at a multiplicity of infection of 100. The bacteria were centrifuged onto the macrophage layer at 1,100 x g for 5 min, and the plates were incubated for 1 h at 37°C in an atmosphere including 5% CO2. Invasion and persistence were determined as described above.
Measurement of RpoS expression. Two 20-bp primers were used to amplify a fragment of 982 bp from position of 120 bp within the rpoS start sequence to 862 bp upstream of the start codon, within the nlpD gene and containing the known promoter site (37). This was first ligated into a TOPO vector, pR2.1 (Invitrogen, Paisley, United Kingdom) before being excised and ligated into the lacZYA reporter plasmid, pRW50 (42), and the construct was electroporated (Gene Pulser; Bio-Rad, London, United Kingdom) into serovar Typhimurium F98 and the nuoG, cydA, and atpB mutants. The cultures were purified and cultured in LB broth containing 10 µg of tetracycline/ml with shaking. Viable counts and optical density were measured regularly, and ß-galactosidase activity was determined at 4 and 12 h postinoculation using standard procedures (46).
Measurement of acid tolerance response. A standard assay was used (7). Strains to be tested were grown overnight at 37°C with shaking in minimal E medium (minE), pH 7.6, supplemented with 0.04% glucose. The glucose concentration was increased to 0.2%, and the bacteria were grown for a further 3 h with shaking. Bacteria were diluted 1 in 10 in minE, pH 5.6, for adaptation to acidic conditions or pH 7.6 for unadapted control cells and incubated for 3 h at 37°C with shaking. Cultures were then diluted 1 in 100 in minE, pH 3.3, and returned to 37°C. At specified time intervals, samples were removed for determination of viable counts. Each mutant was tested in triplicate. Data are expressed as a percentage of viable cells compared with those prior to transfer to the pH 3.3 medium.
| RESULTS |
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Three-week-old chickens were inoculated with serovar Gallinarum. At this age such birds are resistant to systemic disease with serovar Typhimurium infection but are still susceptible to serovar Gallinarum infection (5, 53). In contrast to the parent strain, which produces typical signs of fowl typhoid in a high proportion of the chickens inoculated, the nuoG, cydA, cyo, and atpB mutants were all attenuated. The nuoG and atpB mutants were most attenuated, with the former producing no salmonellosis in any of the 20 chickens inoculated (<5%) and the latter producing salmonellosis in only 1 chicken out of 15 (7%).
The situation with mice was quite different. With the dose used, the parent strains serovar Typhimurium and serovar Dublin 2229 were highly virulent (78 to 100% of the mice succumbed). The atpB mutant was highly attenuated (<10% of mice succumbed), and the nuoG and cydA mutants of serovar Typhimurium C5 and the nuoG mutant of serovar Dublin 2229 showed some reduction in virulence, which was, nevertheless, of little significance. Other attenuations were much less marked.
Mutations in atp but not nuoG, cydA, or cyoA significantly affect the in vivo invasiveness of serovar Typhimurium F98. The effect of the mutations on different stages in the pathogenesis of systemic salmonellosis was studied using serovar Typhimurium F98 in newly hatched chickens. Intestinal invasiveness was tested by isolation from the liver and spleen, since chickens have no lymph nodes. The parent serovar Typhimurium strain and its nuoG, cydA, and cyoA mutants behaved similarly, and the results for the parent and the atpB mutant strains only are shown in Table 3. High bacterial densities of both strains were observed in the ceca during the course of the experiment. The atpB mutant was isolated from the liver and spleen considerably later than were the other strains. This was of significance because the 50% lethal dose of serovar Typhimurium for chickens by parenteral inoculation increases over the first 24 and 48 h by more than 1 and 2 orders of magnitude, respectively (5).
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| DISCUSSION |
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The degree of attenuation varied in each of the infection models, with only mutations in atp being attenuated in them all, suggesting subtle differences between serovars. The virulence of serovar Typhimurium was assessed in chicks that were newly hatched only because chickens more than a few days old are resistant to systemic infection (5). Newly hatched chickens, which are immunologically immature and possess a relatively simple gut flora, are very much more susceptible to systemic disease with a number of serovars (54). All initial infections were made by oral inoculation, and the experimental evidence showed that attenuation was expressed primarily when the bacteria were multiplying in the cells of the reticuloendothelial system, since, with the exception of the atpB mutant, invasiveness was not reduced. The greater attenuation observed with some of the mutations (nuoG and cydA) in mice suggests that this may be largely a host species characteristic rather than a Salmonella serotype characteristic.
The mutation in nuoG, abolishing NADH dehydrogenase I, was not significantly attenuating for serovar Typhimurium or serovar Dublin in mice. The greatest attenuation was observed for serovar Gallinarum, and this is thought to be associated primarily with poor survival and multiplication in the reticuloendothelial system of the chicken (66). NADH dehydrogenase I is induced under microaerophilic and stationary-phase growth conditions under the differential regulatory control of ArcA, FNR, NarL (2, 8), and Fis (58). Mutations in nuo genes are known to affect a number of aspects of microbial physiology and biochemistry (16, 56), which undoubtedly has consequences for virulence.
The degree of attenuation induced by mutations in cydA or cyoA varied significantly depending on the Salmonella serotype and host species. The cytochrome d oxidase has a higher affinity for oxygen than cytochrome o and so is more important for electron transport at lower oxygen tensions, but it is less efficient at translocating protons (25). In addition, mutations in the cyd or cyo operon increase susceptibility in E. coli to oxidative stress (41), and cyd mutants are thought to be depleted in intracellular iron, indicated by the overproduction of siderophores (17). Mutations in cyoA or cydA were attenuating to various degrees in chickens but much less so in mice, suggesting that oxygen may be an electron acceptor of differing significance for Salmonella in chickens and mice during infection. The greater attenuation of the cydA mutant than the cyoA mutant for chickens also suggests a microaerophilic environment within the chicken macrophages, and the attenuation was supported by the poor survival in chicken macrophages. The lack of attenuation of these mutations for serovar Dublin in mice may be because, for this serovar, loss of one cytochrome oxidase may be complemented by the other, as has been suggested previously for E. coli (18, 59), or because oxygen is not a major terminal electron acceptor for serovar Dublin during infection of mice. An assessment of the virulence of a cyoA cydA double mutant may indicate which of these is true. Previous work with Shigella dysenteriae has shown that mutations affecting cytochrome d oxidase levels attenuate virulence, both for mice after intranasal inoculation and in the size of plaques produced in cell monolayers (62). The attenuating effects were considered to be mainly the result of reduced survival in the intracellular environment, although it was speculated that this might also affect survival in the lower alimentary tract, where oxygen would be present in low concentrations. With chickens, at least, this is unlikely, since neither cydA nor cyoA contributes to intestinal colonization by serovar Typhimurium (P. A. Barrow and M. A. Lovell, unpublished observations). In contrast to the other mutations, the cydA mutation in serovar Typhimurium conferred enhanced tolerance to low pH and enhanced survival in J774A.1 macrophage-like cells. The tolerance to low pH may be explained if such mutants accumulated a metabolite that had a buffering capacity, such as has been observed for iso-citrate dehydrogenase mutants that are more acid tolerant, probably due to increased intracellular levels of citrate and iso-citrate (23).
Only mutations in atp were equally attenuating in all the serovars. Although it is likely that the atpH mutant can synthesize the F0 component of the ATPase, the pore in this membrane protein does not open until contact is made with the F1 component (27). Therefore, the phenotypes of the atpB and atpH mutants would be expected to be similar, and this was generally the case, except that the atpH mutant was more susceptible to acidic pH. This may be due to the F0 component allowing leakage of protons across the cytoplasmic membrane. In addition to poor survival and inability to multiply in the spleen, the atpB mutant showed reduced invasiveness in vivo. This was also reflected in reduced in vitro invasiveness, and in addition, previous findings (67) suggest that the reduced in vivo invasiveness may also reflect poorer intestinal colonization. Previous work (24) has shown that mutations in atp genes attenuate serovar Typhimurium for mice and result in reduced acid tolerance. These authors (24) showed that despite the reduced invasiveness from the gut after oral inoculation, there was no evidence for reduced tolerance of stomach acidity, since dosing the animals with sodium bicarbonate did not affect the result. In the present study, of the mutants tested, the atp mutants were the most sensitive to low pH, with or without adaptation. This suggests that the F0F1 ATPase has a vital role in countering low environmental pH (27, 34) and that such environments are encountered during the infection process. The atpB and atpH mutants of serovar Typhimurium were less able to persist in the cultured J774A.1 murine macrophage-like cell line, and decreases in pH of the Salmonella-containing vacuoles following the entry of serovar Typhimurium into macrophages have been demonstrated (1, 50, 55). The importance of the F0F1 ATP synthase in internal pH regulation is now well documented (24, 27, 34), and its significance in survival within the phagosome is likely to be considerable. However, the reduced acid tolerance and increased RpoS expression are, to some extent, incongruous and remain to be resolved. In all such in vitro virulence assays, viable counts from macrophage survival assays should be treated with caution because reduction in bacterial numbers can result not only from bacterial killing, as probably occurred with at least the atp mutant, but also from macrophage death either by necrotic lysis (15, 26) or by apoptosis (48). This did not appear to be a major problem during this study, since it was taken into account.
The proton-translocating enzymes have a central role in cellular metabolism, and consequently, mutations affecting these enzymes are pleiotropic. Probably the most important effect of such mutations is a change in their ability to use carbon sources efficiently to derive energy with oxygen as an electron acceptor. The effect of two of the three mutations on rpoS expression supports the case for the importance in ATP generation through the electron transport chain in the intracellular environment. RpoS is expressed in the intracellular environment (14) and also contributes to Salmonella virulence (17). Although its regulatory effects on the spv genes of the virulence plasmid are well known (13), it also modulates the acid tolerance response (38), which is likely to be of relevance in the phagolysosome and may explain the effects on RpoS expression and acid tolerance, for the atp mutants at least. The reduced activity of the Lon protease in atp mutants, probably associated with lower intrabacterial concentrations of ATP (3), may also contribute to the attenuating phenotype. However, the nuoG and cydA mutants behaved differently, and the attenuating effects of mutations in these genes are likely to have been effected in other ways. The different behavior of the cydA mutant correlated with its increased survival intracellularly and at low pH.
An increasing number of genes have been identified as being required for virulence in animal typhoid models, including several required for the synthesis of different nutrients. However, few genes whose protein products are required in central metabolic pathways have been confirmed as required for virulence (35, 43). As we have shown here, mutations in proton-translocating enzymes, which are central to metabolism, can be attenuating in some Salmonella-host combinations. Klose and Mekalanos (36) have suggested that mutants defective in central metabolism should be effective live vaccines, since such mutations may not affect virulence gene expression. The nuoG mutant of serovar Gallinarum (66) is an example of this, and it is possible that other proton-translocating enzyme mutations may prove useful in the development of live attenuated vaccines against Salmonella and other pathogens.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Present address: Acambis Research Ltd., Peterhouse Technology Park, Cambridge CB1 9PT, United Kingdom. ![]()
Present address: Institute of Infection and Immunity, Queen's Medical Centre, Nottingham University, Nottingham NG7 2UH, United Kingdom. ![]()
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