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Infection and Immunity, June 2003, p. 3419-3428, Vol. 71, No. 6
0019-9567/03/$08.00+0 DOI: 10.1128/IAI.71.6.3419-3428.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Departments of Medicine,1 Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, California2
Received 6 November 2002/ Returned for modification 16 December 2002/ Accepted 7 March 2003
| ABSTRACT |
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| INTRODUCTION |
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Much effort has therefore been directed at defining the structural differences between HAB and in vitro-cultivated Borrelia (IVCB). The small numbers of HAB found in the tissues of infected mice have been regarded as insufficient for direct protein and antigenic analysis. PCR-based methods have detected 3 x 105 spirochetes per mg of mouse ear DNA (2), as well as 106 spirochetes per mg of heart DNA and 3 x 105 spirochetes per mg of joint DNA in both C3H and C3H-SCID mice (2, 35, 57). Because mouse ears, hearts, and joints contain severalfold less than 1 mg of DNA (Champion, unpublished observations) and because there may be many copies of the chromosome in each spirochete (26, 47), the actual numbers of HAB in a mouse may be less than the numbers given above seem to indicate.
A variety of genetic approaches have therefore been employed to search for genes differentially expressed by HAB and IVCB. In two recent studies the researchers examined genes downregulated during infection in response to immune pressure (31, 34). Liang et al. showed that ospC is downregulated soon after infection of immunocompetent mice but not after infection of SCID mice (31). Liang and colleagues used reverse transcription PCR (RT-PCR) to determine whether 137 lipoprotein genes were expressed during skin infection of normal and SCID mice; 97 of these genes were downregulated in immunocompetent mice (34). The genes upregulated during infection include eppA (7), pG (55), bbk2.1 (1), ospE paralogues (54), p35 or the gene encoding fibronectin binding protein, bbk32 (16, 40, 53), and p37 (53), as well as dbpA (6, 21). However, because HAB strains have not been available for direct study, the full set of genes upregulated during infection, the quantitative extent of upregulation, and the cellular location of upregulated proteins have remained unknown or have been inferred. There has been only one study in which intact HAB strains were used for structural analysis of any sort. Using immunofluorescence, Montgomery and colleagues showed that OspC could be detected on the surface of B. burgdorferi recovered from mice by peritoneal washing (37). Pathogenic mechanisms that have been elucidated, such as VlsE antigenic variation, have been examined by using genetic strategies (58-60) rather than direct analysis of HAB.
In this report, we describe new methods that allow direct determination of the HAB protein composition in ear, joint, and heart tissues of immunodeficient mice. By extracting hydrophobic HAB proteins from tissues and then performing immunoblotting with two-dimensional gels, we were able to visualize the constellation of major changes that comprise the early stage of spirochetal adaptation to the host environment.
| MATERIALS AND METHODS |
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3 passages) virulent B31 was used in all experiments. Strain ME3-2 is a B31 clonal isolate that was grown from SCID mouse blood and lacks vlsE (data not shown). Infection of C3H SCID mice with B. burgdorferi. Seven-week-old C3HSmn.CB17-Prkdcscid/J (C3H SCID) mice (Jackson Laboratory, Bar Harbor, Maine) were inoculated intradermally with 107 virulent B. burgdorferi B31 cells. Seventeen days later, the animals were sacrificed, and the ears, ankles, knees, and hearts were collected and snap frozen in an ethanol-dry ice bath.
RT-PCR. A DNeasy tissue kit from Qiagen (Valencia, Calif.) was used according to the manufacturer's instructions to obtain genomic DNA from tissue samples and IVCB. Purified DNA samples were ethanol precipitated and resuspended in 50 µl of water. Primers and probes were selected for the flagellin gene (GenBank accession no. AE001126) for use in quantitation of B. burgdorferi strain B31 in infected tissues. The upstream primer for flaB corresponds to the region from base 579 to base 602 (TGTTGCAAATCTTTTCTCTGGTGA) of the open reading frame. The downstream primer corresponds to the region from base 635 to base 656 (CCTTCCTGTTGAACACCCTCTT). The probe corresponds to the region from base 609 to base 631 (TCAAACTGCTCAGGCTGCACCGG). The nidogen gene (exon 2) was selected for murine tissue quantitation (GenBank accession no. L17323). The upstream primer for nidogen-1 corresponds to the region from base 86 to base 105 (CACCCAGCTTCGGCTCAGTA) of the open reading frame. The downstream primer corresponds to the region from base 133 to base 148 (TCCCCAGGCCATCGGT). The probe corresponds to the region from base 107 to base 131 (CGCCTTTCCTGGCTGACTTGGACAC). The probes were labeled with 6-carboxyfluorescein at the 5' end and with 6-carboxy-N,N,N',N'-teramethylrhodamine at the 3' end. The primers were purchased from Invitrogen (Carlsbad, Calif.), and the probes were purchased from Qiagen. TaqMan universal PCR master mixture (Applied Biosystems, Foster City, Calif.) was used for all reactions. Each reaction mixture (25 µl) contained each primer at a concentration of 900 nM and the probe at a concentration of 250 nM. Amplification and detection were performed with an ABI 7700 system by utilizing the following parameters: 50°C for 2 min and 95°C for 10 min, followed by 40 cycles of 95°C for 15 s and 60°C for 1 min. The fluorescence was monitored continuously. The data were analyzed, and the cycle threshold value was determined by using the ABI Sequence Detection System software, version 1.9. Flagellin and nidogen reactions were performed in separate wells. One hundred nanograms of DNA from infected tissue was used for most reactions; the exceptions were the reactions for the ear tissue, for which 10 ng was used. The amounts of B31 and mouse DNA were calculated based on standard curves for a 6-log dilution series for B. burgdorferi and a 4-log dilution series for mouse DNA (Novagen, Madison, Wis.). Values for the B31 standard curve were obtained in the presence of 100 ng of mouse DNA. The copy number of each sample was determined by plotting the cycle threshold value versus the log of the copy numbers included in each standard curve. All samples were examined in triplicate. No-template controls were included with every assay for each primer set.
RT-PCR analysis of vlsE, ospC, and dbpA in HAB and IVCB. In order to determine the relative amounts of VlsE, OspC, and DbpA in HAB and IVCB, RT-PCR was performed as described previously (47). In this study, the flagellin subunit gene flaB was used as a normalizing control for HAB and IVCB. The following primer sets were used for the PCR: flaB forward (5' CTGGCAAGATTAATGCTCAA 3') and flaB reverse (5' CAGGAGAATTAACTCCACCT 3'); OspC forward (5' GAAAAAGAATACATTAAGTGC 3') and OspC reverse (5' CTTGTAAGCTCTTTAACTGAA 3'); DbpA forward (5' TAACTATACTTGTTAACCTAC 3') and DbpA reverse (5' AGTTTCTTTGAGTTTAGTAGC 3'); and VlsE forward (5' AGATGATAACTTATACTTTTCATTA TAAGGAGACG 3') and VlsE reverse (5' ACGGCAGTTCCAACAGAACCTGTACTATCT 3'). The PCR conditions were as follows: 94°C for 10 min to activate the AmpliTaq Gold (Perkin-Elmer, Norwalk, Conn.), followed by 40 to 45 cycles of denaturation at 94°C for 1 min, annealing at 48°C for 1 min, and elongation at 72°C for 1 min.
Extraction of hydrophobic HAB antigens from B31-infected tissues. Infected tissue was homogenized in a PowerGen 125 tissue grinder (Fisher Scientific Co., Pittsburgh, Pa.) in 10 mM Tris (pH 8.0)-1 mM EDTA-1 mM phenylmethylsulfonyl fluoride (approximately 50 mg of tissue/ml). Triton X-114 was added to a final concentration of 3%, and the samples were incubated overnight at 4°C with gentle rocking. Insoluble material was pelleted by centrifugation for 30 min at 16,000 x g at 4°C. The cell-free lysate was then incubated at 37°C for 5 min, and this was followed by centrifugation at 3,400 x g for 15 min at room temperature in order to generate aqueous and detergent phases. The detergent phase was washed three times with 10 mM Tris-1 mM EDTA (pH 8.0). IVCB were washed three times with phosphate-buffered saline and resuspended in 10 mM Tris (pH 8.0)-1 mM EDTA-1 mM phenylmethylsulfonyl fluoride. Triton X-114 extraction and precipitation were performed as described above. For sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) analysis, detergent-phase samples were precipitated by mixing them with 3 volumes of -20°C acetone and incubated at -20°C for 2 h. The precipitate was pelleted by centrifugation for 30 min at 16,000 x g and 4°C. The pellet was air dried and resuspended in final sample buffer. For two-dimensional electrophoresis analysis, detergent-phase samples were precipitated by addition of three volumes of 10% trichloroacetic acid-20 mM dithiothreitol (DTT) in -20°C acetone and incubated at -20°C for 2 h. The precipitate was pelleted by centrifugation at 16,000 x g for 30 min at 4°C, and the pellet was washed once with -20°C acetone containing 20 mM DTT. The pellet was then air dried and resuspended in 7 M urea-2 M thiourea-1% amidosulfobetaine-14 (8, 36).
SDS-PAGE and immunoblot analysis.
Protein samples were separated by SDS-PAGE (12% acrylamide) by using the Laemmli method (30). The proteins were transferred to polyvinylidene difluoride membranes and stained with amido black. The membranes were probed with either immune rabbit serum (IRS) (diluted 1:1,000),
OspC (diluted 1:1,000),
VlsE (diluted 1:2,000),
DbpA (diluted 1:2,000),
BmpA (diluted 1:10,000),
LA7 (diluted 1:10), or mouse serum (diluted 1:1,000), each diluted in phosphate-buffered saline containing 0.05% Tween 20 and in 5% nonfat dry milk. For OspC, LA7, and mouse serum from B31 chronically infected mice (CMS), horseradish-linked sheep anti-mouse secondary antibody (Amersham Biosciences) was used at a dilution of 1:2,500 as a secondary antibody. For all other analyses, horseradish-linked donkey ant-rabbit antibody (Amersham Biosciences) was used at a dilution of 1:2,500. Visualization was performed with the ECL Plus system from Amersham Pharmacia Biotech and an Alpha Innotech Fluorchem 8000 imager. Band densitometry was performed with the Fluorchem imaging software (version 2.0). The following individuals provided antisera: Steven Norris, University of Texas at Houston (
VlsE) (unpublished data); Steven Callister, Gundersen Lutheran Medical Center (
OspC) (44); Felipe Cabello, New York Medical College (
BmpA) (unpublished data); and Magnus Hook, Texas A&M University (
DbpA) (20). Anti-LA7 monoclonal serum was provided by the Institut für Immunologie, Heidelberg Germany (19, 56). IRS was obtained from rabbits with complete infection-derived immunity to reinfection (17, 18, 48).
Immobilized pH gradient two-dimensional electrophoresis (IPG-2DE). Protein samples were analyzed by two-dimensional electrophoresis by using the IPGPhor-2D system from Amersham Pharmacia Biotech. Acetone pellets were resuspended in 7 M urea-2 M thiourea-1% ASB-14. DTT was added to a concentration of 20 mM prior to loading onto the first dimension (immobilized pH gradient), along with the appropriate pH range immobilized pH gradient buffer (pH 3 to 10) at a concentration of 0.05%. Samples were included directly in the rehydration buffer and allowed to swell the immobilized pH gradient strip overnight (30 V, 20°C) or were loaded directly onto the swollen strip (18 cm) via cup loading. The isoelectric focusing parameters were as follows: (i) 1 min at a 500-V gradient, (ii) 1.5 h at a 4,000-V gradient, and (iii) 8,000 V for 40,000 V · h, with a 50-µA/strip maximum setting at 20°C. The completed first-dimension strip was separated by conventional SDS-12% PAGE, and the proteins were transferred to polyvinylidene difluoride for immunoblotting as described above.
| RESULTS |
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Relative amounts of vlsE, dbpA, and ospC transcripts in HAB and IVCB. The findings presented above provide a measure of the relative amounts of VlsE, DbpA, and OspC found in SCID mouse tissues and in IVCB. We also determined the relative amounts of the transcripts by RT-PCR as described in Materials and Methods. IVCB cells were added to normal mouse tissue and processed in the same way as the infected tissue (Fig. 4). In conditions under which approximately equal amounts of the flaB product were detected in IVCB and in infected ear, knee, ankle, and heart tissues, vlsE, ospC, and dbpA products were detected in the infected tissues but not in identically processed IVCB. These findings indicate that transcription of these genes is upregulated during infection. ospC and dbpA products were most prominently detected in infected ankle and ear tissues, respectively. The relative amounts of vlsE, ospC, and dbpA transcripts with respect to each other varied considerably from tissue to tissue in conditions under which flaB detection was constant. The amount of dbpA transcripts in ear tissue was not in accord with the relative paucity of DbpA detected in ear tissue by immunoblotting (Fig. 2C).
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| DISCUSSION |
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In this report, we describe a novel approach for determining the hydrophobic antigen composition of HAB in infected tissue. This approach, termed hydrophobic antigen tissue Triton extraction (HATTREX), was used to determine the amounts of VlsE, DbpA, and OspC in tissue in relation to the relative amounts in IVCB. HATTREX is based on the fact that most B. burgdorferi membrane proteins are hydrophobic (52), although there are exceptions, such as the channel-forming protein P66 (Oms66) (51), which is believed to be an integrin binding protein (9). Triton X-114 phase partitioning has been employed for a long time to obtain a membrane protein-enriched fraction from pathogenic spirochetes (11, 42, 43). In this study, Triton X-114 extraction of infected SCID mouse tissues followed by phase partitioning proved to be a remarkably effective way of concentrating the small numbers of HAB cells (about 105 spirochetes) found in individual biological structures, such as a mouse heart, ear, ankle, or knee joint, for antigenic analysis by immunoblotting. HATTREX works because only a small proportion of mouse tissue proteins are hydrophobic, whereas most HAB antigens of interest are hydrophobic. Analysis of HAB antigens in the hydrophilic or aqueous phase has been problematic because the large amount of mouse protein relative to the amount of HAB hydrophilic protein can result in overloading of gels. The findings presented here were restricted to analysis of hydrophobic detergent-phase antigens. Because flagellin is a hydrophilic protein, it could not be included as a reference for a protein whose abundance should be constant under different environmental conditions. It should also be noted that a limitation of conclusions that can be drawn after use of HATTREX is related to the fact that this method is a method for determining antigenic composition and does not assess the antigenic structure of the intact spirochete. Cox and colleagues have shown that the surface exposure of OspA is far less than its compositional abundance suggests (10). Abundance, as shown by HATTREX and immunoblotting, does not differentiate between surface and subsurface hydrophobic antigens. It is also conceivable that some proportion of the antigens detected by HATTREX could have an extracellular location (for example, in the form of membrane blebs).
At this time, OspC (23, 28, 31), DbpA (6, 22, 23), and the antigenic variation protein VlsE (15, 24, 32, 39) are the most intensively studied B. burgdorferi membrane proteins. While it has been established that VlsE antigenic variation occurs only during mammalian infection (24) and that the VlsE-encoding plasmid Lp28-1 is important to the virulence of B. burgdorferi during infection of mice (29, 41), VlsE is not an abundant constituent of IVCB, and there have been no reports of the degree of VlsE expression during infection. The hydrophobic antigen composition of HAB revealed by the HATTREX approach is distinctly different from that of IVCB. HAB cells lack detectable OspA and OspB. In this regard our findings are not in accord with a recent report which demonstrated that ospB transcripts are present throughout infection of immunodeficient mice (34). It is striking that VlsE is the most abundant hydrophobic antigen of HAB extracted from ear and joint tissues, as judged by immunoblotting with IRS, while it is an undetectable constituent of IVCB probed with the same antiserum under identical conditions. Equally striking is the consistent observation in three separate experiments of the paucity of VlsE in heart tissue. One possible explanation for this could be the presence of a protease in the heart tissue that is not as abundant as it is in other tissues. Alternatively, regulation of VlsE could be tissue specific. It will be interesting to ascertain the level of VlsE expression in the hearts of immunocompetent mice. While OspC is a prominent constituent of HAB in SCID mouse ear, heart, and joint tissues, Liang and colleagues have shown that OspC synthesis decreases in response to the development of specific antibodies by immunocompetent mice, as discussed below (31).
The antigenic profiles of HAB provide a relative indication of spirochetal proteins that are far more abundant than they are in IVCB. While we and other workers have estimated the numbers of B. burgdorferi cells in infected tissues by PCR (47, 57), the estimates are based on the assumption that there is one copy of the chromosome per spirochete (38). There is no information about the chromosome content of HAB.
We also employed RT-PCR as a means of determining whether there was correspondence between the amount of an antigen in infected tissues as detected by HATTREX and the amount of the antigen in infected tissues as detected by immunoblotting. An advantage of the RT-PCR approach was its ability to provide an internal control for a gene whose expression was unlikely to be environmentally regulated, the gene encoding the flagellar subunit protein, flaB. This hydrophilic protein could not be recovered by HATTREX. When RT-PCR was used and HAB and IVCB samples were normalized relative to the amount of flaB present in each sample, the higher levels of vlsE, dbpA, and ospC RT-PCR transcripts in HAB than in IVCB were apparent, just as HATTREX revealed larger amounts of VlsE, DbpA, and OspC in HAB cells than in similar numbers of IVCB cells. HATTREX-immunoblotting and RT-PCR findings diverged, however, with regard to tissue-specific differences in the amounts of the antigens or their transcripts relative to each other. For example, the relative amount of the dbpA transcript in ear tissue was greater than the amount of DbpA relative to OspC and VlsE. However, it should be emphasized that all these antigens and transcripts are abundant in tissues relative to the amounts in IVCB. The role of tissue-specific differences in abundance is of potential interest for pathogenesis but is conjectural at this time. It has been shown that dbpA synthesis and ospC synthesis are coordinately regulated by RpoN-RpoS in vitro (23). In vivo expression may be multifactorial and tissue specific.
Recently, Liang et al. used RT-PCR to study the temporal expression of ospC in normal and SCID mice (31). ospC transcription is upregulated in SCID mice compared with transcription in IVCB. In normal mice, ospC transcription decreases in conjunction with the appearance of OspC antibodies. Infusion of OspC antibodies into SCID mice eliminated ospC transcription. In our work with SCID mice, ospC was clearly upregulated at the time point studied, 17 days after infection. We used HATTREX to examine the temporal expression of B. burgdorferi antigens in the skin of rabbits. In this case, the amount of ospC expressed was diminished in the same time frame as that described by Liang et al. for mice (31; T. Crother, C. Champion, J. Whitelegge, X. Wu, D. Blanco, J. Miller, and M. Lovett, unpublished data).
The amount of VlsE in HAB found during infection of SCID mice complements previous findings that VlsE undergoes antigenic variation during SCID mouse infection (60). Although VlsE appears to have a likely role in immune evasion through antigenic variation, initiation of VlsE antigenic variation does not seem to be dependent on an active immune system (29, 41, 60). It has been suggested that the gamma interferon pathway may be involved in activating VlsE recombination (3).
The lower-molecular-mass forms of VlsE, although present at minor levels in IVCB, are a striking feature of HAB in all mouse tissues except heart. Because the smaller VlsE forms are hydrophobic, as judged by isolation from the Triton X-114 detergent phase, it can be concluded that the hydrophobicity is due to retention of amino-terminal acylation. The predicted sequence topology of VlsE does not include membrane-spanning domains that would convey hydrophobicity (58). Therefore, it is likely that the smaller VlsE forms are generated by C-terminal proteolysis. This proteolysis appears to be of a specific nature, given the discrete molecular mobilities of the smaller VlsE forms. Smaller forms of the other abundant surface proteins, OspC and DbpA, were not found in the mouse tissue samples or in IVCB, arguing against generalized proteolytic degradation of surface proteins. It should be noted that smaller forms of OspA and OspB were not detected in IVCB (Fig. 5), while the smaller VlsE forms were readily detected in IVCB (Fig. 3E and F). The fact that smaller VlsE forms are found in IVCB supports the hypothesis that they are generated by a specific B. burgdorferi protease and do not reflect an autolytic activity of infected tissue.
Several additional lines of evidence are in accord with the possibility that the smaller VlsE forms are specifically produced by B. burgdorferi and are not artifactual. To assess the possibility that the smaller VlsE forms were generated by the Triton X-114 extraction process, intact IVCB cells were directly solubilized in sample buffer containing 7 M urea, 2 M thiourea, and 1% ASB-14 prior to IPG-2DE. The smaller VlsE forms were readily detected (Fig. 3F). To assess the possibility that the smaller VlsE forms represented cross-reactions of the smaller VlsE form monospecific antiserum with other B. burgdorferi proteins, we analyzed a clonal isolate of B. burgdorferi that lacked Lp28.1 and was therefore unable to express VlsE. Smaller VlsE form bands were not detected, indicating that the binding of the VlsE antiserum to smaller VlsE forms was specific (Fig. 3G). Because the monospecific VlsE antiserum was generated by immunization with recombinant VlsE, we considered the possibility that its ability to bind smaller VlsE forms reflected immunization with breakdown products of recombinant VlsE. We found, however, that serum from mice chronically infected with B. burgdorferi (CMS) also bound the smaller VlsE forms (Fig. 3I).
Apart from specific proteolysis, another possible route for generation of the smaller VlsE forms is by illegitimate recombination events during antigenic variation. However, no truncated vlsE open reading frames have been found in the numerous studies performed on VlsE (24, 25, 58, 59). Furthermore, analysis of VlsE in several individual clonal isolates of B31 revealed both unit-size VlsE and smaller VlsE forms (Crother and Lovett, unpublished observations). Taken together, our data suggest that B. burgdorferi produces smaller VlsE forms through a specific mechanism both during infection and during in vitro cultivation.
There has been one previous study in which smaller forms of a B. burgdorferi surface protein were detected. Bundoc and Barbour found that clonal isolates of strain HB19 expressed different forms of OspB (5). Some clones expressed unit-size (33-kDa) OspB, some expressed both 33-kDa OspB and a 21-kDa form of OspB, and others expressed only an 18.5-kDa form of OspB. The mechanistic basis for these modes of OspB expression was not determined. Our studies did not reveal smaller forms of OspB in IVCB cells of strain B31 (Fig. 5), and OspB was not detected in HAB. In addition, we analyzed VlsE forms from clonal isolates of strain B31 (data not shown), and each clone contained the full set of smaller VlsE forms shown in Fig. 3. The smaller VlsE forms therefore do not appear to be expressed as a result of clonal variation.
The crystal structure of VlsE has recently been described (15). Precise determination of VlsE cleavage sites in relation to the topology is of great interest and may provide an indication of whether the protein is cleaved prior to export and mature folding. It seems highly likely that the cleavage events greatly change VlsE topology. As such, VlsE processing and creation of smaller VlsE forms could be yet another means by which B. burgdorferi can evade the immune response.
It is noteworthy that the antigenic profile of HAB obtained by HATTREX, while dominated in ear and joint tissues by VlsE, contains novel antigens that are upregulated relative to their representation in IVCB. The cellular location and biological significance of these proteins remain to be determined. Using the HATTREX approach, we also identified proteins, such as LA7 and BmpA, which are readily detectable but not massively upregulated in certain tissues, as well as in IVCB. The use of complementary methodological approaches to ascertain HAB gene expression and antigenic composition during infection is clearly indicated given both the difficulty of obtaining this information and its importance.
| ACKNOWLEDGMENTS |
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We thank Evelyn Pineda for her invaluable assistance.
| FOOTNOTES |
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