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Infection and Immunity, June 2003, p. 3485-3495, Vol. 71, No. 6
0019-9567/03/$08.00+0 DOI: 10.1128/IAI.71.6.3485-3495.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Luke Baton,2,3 Kevin Tetteh,2 Eric Tongren,2 David Dewin,2 Bartholomew D. Akanmori,4 Kojo A. Koram,4 Lisa Ranford-Cartwright,1,3 and Eleanor M. Riley1,2*
Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh EH9 3JT,1 Department of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT,2 Division of Infection and Immunity, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom,3 Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana4
Received 7 August 2002/ Returned for modification 5 December 2002/ Accepted 24 February 2003
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In some genes (e.g., the circumsporozoite surface protein [csp] gene), point mutations cluster in areas immunodominant for T cells (16) and can lead to loss of epitope recognition (38) or antagonism of T-cell responses (26), although it is not clear that either of these leads to the avoidance of protective immunity. Similarly, monospecific antibodies differentiate between allelic variants of merozoite surface proteins (13, 23), but the human antibody response is commonly directed at conserved or semiconserved epitopes (8, 34) and direct evidence for the evasion of antibody-dependent immunity is lacking.
Comparison of the frequencies of nonsynonymous-to-synonymous mutations (20) for P. falciparum genes provides evidence of diversifying selection in msp-1 (11), which encodes merozoite surface protein-1, but the data are less clear for msp-2, which encodes merozoite surface protein-2 (9, 11, 21), and the significance of the findings is uncertain, given the limitations of the method (37). Comparison of intra- and interpopulation variances in allele frequencies provides evidence for selection on a polymorphic region of msp-1 (5) and dimorphic regions of msp-2 (4), but there are no data for polymorphic regions of msp-2. Comparison of inter- and intraspecific levels of variation suggests balancing selection on the erythrocyte-binding antigen EBA-175 (25) and the apical membrane antigen AMA-1 (22). However, except for msp-1, for which selection may be mediated by strain-specific antibodies (5), the nature of the selective forces is not clear.
msp-2 is the most polymorphic locus yet described for P. falciparum (14), with over 170 alleles sequenced to date (18). msp-2 alleles are divided into two families (IC-1-like and FC27-like) (31) based on dimorphic sequences internal to the conserved N and C termini (Fig. 1). Point mutations occur in all regions of the gene (including conserved and dimorphic sequences), and variations in sequence, length, and number of amino acid repeats occur in the polymorphic region. Seroepidemiological studies indicate that the conserved N and C termini of the molecule are poorly recognized by immune serum but that the dimorphic sequences are strongly recognized by most adult immune sera (34). Analysis of responses to polymorphic sequences is difficult, as it is rarely known with which parasite genotypes an individual has been infected and to which sequences he or she might be expected to have made antibodies. Nevertheless, sera from a high proportion of both children and adults do recognize recombinant proteins representing individual polymorphic sequences (34), indicating either that these sequences are common in the parasite population or that they contain epitopes that cross-react with other sequences. There is good evidence that anti-MSP-2 antibodies contribute to protective immunity. In independent epidemiological studies, immunoglobulin G3 (IgG3) antibodies have been associated with resistance to clinical malaria (2, 32), anti-MSP-2 antibodies have inhibited the growth of parasites in vitro (10), and in a recent human trial, immunization with the 3D7 variant of MSP-2 prevented reinfection with parasites carrying alleles of the same family (IC-1) (15).
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FIG. 1. Schematic representation of MSP-2. Highly conserved 5' and 3' sequences define the msp-2 locus; point mutations within these regions may indicate immune selection at the level of T-helper epitopes (12). Dimorphic families are defined by sequences internal to the MSP-2 defining sequences; the type sequence for family A is IC-1 and for family B is FC27 (31). The central region of the protein comprises amino acid sequences repeated in tandem (with varied sequences and numbers of amino acids) and a nonrepetitive sequence that is highly polymorphic in the IC-1 family but less so in the FC27 family. The regions incorporated into the dimorphic IC-1-like (DiA) and dimorphic FC27-like (DiB) recombinant proteins are shown.
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The aim of this study was to determine whether sequence differences between MSP-2 variants are indicative of functional antigenic polymorphism at the level of antibody responses and thus represent a potential mechanism of immune evasion or whether serological cross-reactivity between MSP-2 variants reduces the degree of true antigenic diversity.
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Parasite detection and genotyping. Giemsa-stained blood films were examined by oil immersion microscopy. PCR genotyping of msp-1 and msp-2 was performed for all P. falciparum-positive samples, and the polymorphic domains of msp-2 were sequenced as described previously (14). Sequences were confirmed by analysis of multiple clones (at least five) and/or repeated PCR amplification and sequencing. Each unique sequence was designated with the child's identification number and the age of the child (in weeks) when that sequence was first isolated (e.g., 5-34 is the sequence isolated from child 5 at 34 weeks of age).
Recombinant proteins. The polymorphic sequences of the various MSP-2 alleles were amplified by PCR by using a 5' primer (CGCGGATCCAATATGAGTATAAGGAGAAGTATG) (the BamHI restriction site and the 5' extension are underlined) that anneals the extreme 3' end of the N-terminal conserved region and two 3' primers (GGGAATTCTTAGGTACTGGTAGATGCTTCTGCATC and GGGAATTCTTATTCACTCTCTTCTCCTTTACCGTC) (the EcoRIrestriction site and the 5' extension are underlined; the stop codons are in bold) that anneal the extreme 5' end of the dimorphic segment of the IC-1 and FC27 sequences, respectively. The PCR products were purified using a High Pure PCR product purification kit (HPPPK; Boehringer Mannheim), double digested with BamHI and EcoRI, and inserted into linearized pGEX-2T vectors (Amersham Pharmacia Biotech, Uppsala, Sweden). Recombinant proteins were expressed in Escherichia coli by using the glutathione S-transferase (GST) gene fusion system (Amersham Pharmacia Biotech) and were purified by using glutathione-Sepharose (34). The resulting proteins consisted of full-length GST, a hexapeptide linker sequence (Leu-Val-Pro-Arg-Gly-Ser), the short N-terminal MSP-2 dimorphic region, the entire MSP-2 polymorphic region, and 8 or 12 amino acid (aa) residues from the C-terminal MSP-2 dimorphic region of IC-1 or FC27, respectively. Based on the alignments of Fenton et al. (13), all of the proteins start at residue 44 and end at residue 109 (in the 3D7 sequence) or residue 154 (in the FC27 sequence). The exact MSP-2 sequences in the expressed proteins are shown in Tables 1 and 2. All of the proteins were soluble in phosphate-buffered saline. Unfused GST, including the hexapeptide linker sequence, was expressed from native pGEX-2T vectors and used as a control in enzyme-linked immunosorbent assays (ELISAs).
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TABLE 1. Sequence alignment of MSP-2 IC1-like allelesa
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TABLE 2. Sequence alignment of 12 MSP-2 FC27-like allelesa
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The primers were designed such that one primer in the N-terminal amplification pair had a 5' extension (underlined) that was homologous to a sequence in the C-terminal amplification pair (underlined), allowing hybridization of the two PCR products in the second round of PCR. The first-round PCR products were purified with HPPPK. Equal parts of the N- and C-terminal PCR products were used as templates for a second round of PCR using primers for the 3' extreme-N-terminal (CGCGGATCCAATATGAGTATAAGGAGAAGTATG) and 5' extreme-C-terminal (GGGAATTCTTAAGATTGTAATTCGGGGGA) conserved sequences of the MSP-2 molecule. The primers incorporated BamHI or EcoRI endonuclease restriction sites (underlined) for cloning purposes. As these primers were conserved, the same primer pair could be used for the amplification of both 3D7 and HB3. The resulting PCR products were cloned and expressed in pGEX-2T as described above. The expressed proteins were soluble and comprised the complete N- and C-terminal dimorphic sequences of either 3D7 (IC-1-like) or HB3 (FC27-like), but lack the polymorphic or conserved sequences, and were fused to GST and the hexapeptide linker sequence.
Recombinant GST-MSP-119 was produced as described previously (8).
All of the recombinant vectors were sequenced to confirm that they each contained a full-length insert and that the insert was in frame. All of the proteins were checked for purity by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Bacterial contamination was minimal; all of the proteins were of the expected molecular mass, indicating that full-length proteins had been expressed. All of the proteins appeared to be stable when they were stored at -80 or -20°C.
Serology. ELISAs were conducted exactly as described previously (34). Except where stated to the contrary, sera were tested at a dilution of 1:1,000. The optical density (OD) for the GST control protein was subtracted from the OD for the fusion protein to provide a corrected OD. Corrected-OD values are given for the results shown in all figures except where otherwise stated. A positive control serum (a pool of hyperimmune serum from Gambian adults) was used in all of the assays to confirm that recombinant proteins retained their antigenicity and their ability to bind to the plate.
Nucleotide sequence accession numbers. The MSP-2 gene sequences have been deposited in GenBank (accession numbers AF217004 to AF217043).
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Prior to any immunological analysis, the IC-1-like sequences were divided into five groups based on sequence similarities in the nonrepetitive C terminus. IC-1 group 2 (IC-1-2) was subdivided (into 2a and 2b) on the basis of differences in the N-terminal and repeat sequences (Table 1). IC-1 group 5 (IC-1-5) contains two sequences that do not fit clearly into any of the other groups. The FC27 sequences were less diverse and were grouped into three rather similar groups (Table 2). FC27 group 1 was subdivided (into 1a and 1b) according to the presence or absence of the ESNSPSPPITTT sequence.
Fifteen alleles, selected to represent different sequence groups, were expressed as soluble recombinant proteins.
Cross-reactive antibodies recognize multiple IC-1-like variants of MSP-2. Plasma samples from individual children were tested for IgG reactivity with recombinant proteins derived from parasites with which they were known to have been infected. We noticed apparent serological cross-reactivity between proteins of differing sequence; an example is shown in Fig. 2a. Child 52 was asymptomatically infected with P. falciparum at 10, 34, and 38 weeks of age. Parasite densities were extremely low, being detectable by PCR but not by microscopy (14); two parasite clones (A1 and A2), with different msp-2 genotypes, were identified. Serial plasma samples were tested for reactivity with recombinant proteins representing these two MSP-2 sequences. Reactivities with variant 52-10 (IC-1-1) (first isolated when the child was 10 weeks of age) and those with variant 52-38 (IC-1-2a) (isolated when the child was 38 weeks of age) were identical over a period of more than 1 year. Antibodies in the mother's plasma that were also present in the child until 4 weeks of age also recognized both antigens, although ODs were higher for 52-38 (A2) than for 52-10 (A1). The two proteins clearly differed in sequence (Fig. 2) but shared regions of identity at the C terminus and within the repeats.
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FIG. 2. Cross-reactivity of antibodies to MSP-2 proteins 52-10 1 (clone A1) and 52-38 2 (clone A2). (a) The IgG response over the first 18 months of life of child 52 is shown. DiA and DiB are dimorphic sequences of the IC-1 (DiA) and FC27 (DiB) families. The blood sample obtained at -2 weeks of age was collected from the mother prior to delivery. (b) Competition ELISA for child 52. The first-named protein indicates the protein on the plate; the second is the protein with which the serum was preincubated. The boldface type in the amino acid sequences identifies sequence differences between the two proteins.
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Cross-reactivity of antibodies to IC-1-like variants is a general phenomenon.
To determine whether cross-reactive recognition of MSP-2 variants is a general feature of the human antibody response, we tested plasma samples from 201 malaria-exposed Gambians (aged 3 to 70 years) (30, 34) for reactivity to nine different IC-1-like proteins and, as a control, to a recombinant MSP-119 protein, which has no obvious homology to MSP-2. The responses to MSP-2 and MSP-119 were correlated, although the correlation coefficients were low (r2
0.33); this presumably reflects concomitant exposure to both antigens during natural infection. In contrast, the correlation of antibody responses to some pairs of IC-1-like MSP-2 proteins was very high (Fig. 3 and Table 3). The highest r2 values were seen within group 2, notably for two proteins (17-34 and 71-34) with homology in their repeat sequences and an identical 30-aa sequence at the C terminus. Group 2 was divided into subgroups 2a and 2b on the basis of point mutations in the nonrepetitive N and C termini and differences in the repeat motifs; correlations within group 2a were higher than correlations between group 2a and a group 2b protein (62-46).
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FIG. 3. Identification of cross-reactive epitopes in the IC-1-like family of MSP-2. The amino acid sequences of three MSP-2 proteins and the correlation of antibody responses of 201 Gambian sera to proteins 17-34 and 71-34 (a), proteins 17-34 and 62-46 (b), and proteins 62-46 and 71-34 (c) are shown. The boldface type in the amino acid sequences identifies sequence differences between the proteins.
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TABLE 3. Correlation of antibody responses to pairs of IC-1-like MSP-2 alleles
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FIG. 4. Cross-reactivity within IC-1 subgroup 2 alleles. Competition ELISA results for individual sera from malaria-exposed individuals against pairs of MSP-2 proteins are shown. In each case, the first-named protein was used to coat the ELISA plate and the second-named protein was preincubated with the serum. (a and b) Serum 1578; (c and d) serum 1638; (e and f) serum 1634. The boldface type in the amino acid sequences identifies sequence differences between the proteins.
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Cross-reactivity within the FC27 family of MSP-2. Sequence diversity is less extensive in the FC27 family than in the IC-1-like family, and cross-reactivity between variants would thus be less surprising. The 32-mer and 12-mer repeats vary in number (12-mer repeats being completely absent in some sequences), and minor sequence differences occur within the repeats (Table 2). The number of 12-mer repeats can affect the avidity of antibody binding (27). All alleles shown in Table 2 share a conserved 12-aa sequence (ESSSSGNAPNKT) at the C terminus and a conserved 7-aa sequence (ADTPTAT) between the 32-mer and 12-mer repeats. Either or both of these sequences may confer cross-reactivity and were included in all of our recombinant proteins.
We screened sera from three children with antibodies to at least one of the FC27-like variants for reactivity to proteins representing different sequence groups of FC27-like alleles. All three sera recognized variants 47-30b, 62-22, and 5-34; cross-reactivity was confirmed by competition assay (Fig. 5 a to c) and by correlation analysis (Fig. 5d). The responses to all three variants were highly correlated (Table 4), confirming that they belong to the same serogroup (FC27 group 1 in Table 2). Although we had subdivided group 1 on the basis of sequence data (Table 2), the serological data suggested that the three variants actually belong to a single serogroup and that the ESNSPSPPITTT sequence does not contribute to antibody specificity.
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FIG. 5. Cross-reactive antibody responses to group 1 FC27-like proteins. (a to c) Competition ELISA results for sera from three different Ghanaian children. , 5-34 versus 5-34; , 5-34 versus 47-30; , 5-34 versus 62-22; , 62-22 versus 62-22; , 62-22 versus 47-30; , 62-22 versus 5-34; and , 47-30 versus 47-30; , 47-30 versus 62-22;
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TABLE 4. Correlation of antibody responses to pairs of FC27-like MSP-2 allelesa
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FIG. 6. Lack of cross-reactivity between FC27 subgroup 1 proteins and other FC27-like proteins. (a to c) Correlation of antibody-binding responses (ODs) of 201 individual sera from malaria-exposed donors to proteins 62-22 and 5-38 (a); proteins 120-10 and 62-22 (b); and proteins 120-10 and 5-38 (c).
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For FC27 variants, the sharing of conserved ADTPAT and ESSSSGNAPNKT sequences did not confer cross-reactivity, which indicates that these sequences are not the target of dominant antibody responses. Point mutations in the N-terminal, nonrepetitive region of the polymorphic domain did not appear to have a major effect on antibody binding, as synthetic peptides representing three different sequences were able to compete with each other for antibody binding (data not shown). The major serological subdivision of the FC27-like alleles was between those that contain multiple 32-mer repeats and single (or no) 12-mer repeats (groups 1 and 2 in Table 2) and those that contain a single 32-mer repeat and multiple 12-mer repeats (group 3). Within group 3, differences in the number of 12-mer repeats seriously affected the avidity of antibody binding, confirming our previous observations (27) These data provide evidence in support of the immune selection hypothesis for the FC27 family of msp-2 alleles. However, the number of "strains" or serogroups appears to be rather limited (perhaps as few as 2 or 3), with each serogroup comprising multiple cross-reactive variants. It remains to be seen whether the gradual acquisition of antibody responses to different FC27 serogroups correlates with the development of protective immunity (i.e., whether these antibodies are of functional importance, for example, in inhibiting parasite growth) or whether antibodies to FC27-specific epitopes can structure P. falciparum populations into discrete, nonoverlapping strains (17).
For the IC-1-like alleles, homology in the nonrepetitive C terminus of the polymorphic domain predicts cross-reactivity at the population level and defines at least four separate serogroups. However, some sera appear to recognize cross-reactive epitopes within the repetitive sequence such that cross-reactivity is observed between as well as within sequence groups. It is thus likely that there is a continuum of cross-reactivity within the IC-1 family. It is much less clear that allelic polymorphism might lead to immune evasion within this family of msp-2 alleles, but we cannot rule it out. Differential binding of individual sera to cross-reactive proteins indicates that the major effect of sequence variation may be modifying the affinity or avidity of antibody-antigen interactions rather than leading to complete abolition of antibody binding sites. Further studies are required to determine whether these affinity or avidity differences are sufficient to favor parasite survival, as has been proposed previously (3). Furthermore, it is necessary to establish whether these cross-reactive antibodies can actually mediate cross-strain immunityi.e., that they have a protective role in inhibiting parasite invasion or growthor whether, despite their extensive cross-reactivity, they are in fact irrelevant in terms of protection. The limited data available from MSP-2 vaccination trials suggest that immune responses induced by one member of a dimorphic family do in fact protect against many variants within that family but do not protect against variants from the other family (15).
We have previously reported that repeated infection with genetically distinct parasites leads to boosting of the existing antibody response rather than to generation of novel specificities (33); a recent study of anti-MSP-2 responses in Vietnamese people reports a similar phenomenon (36). We suggested that this may be an example of original antigenic sin (29). The same phenomenon may explain the tendency of the response to MSP-2 to focus primarily on cross-reactive epitopes. If these epitopes have a natural tendency (because of their physical location or tertiary structure) to be immunogenic for B cells, antibodies to them will predominate during a primary immune response and, once formed, will focus attention on similar (cross-reactive) epitopes during subsequent infections. If so, the MSP-2 sequence of a primary P. falciparum infection may determine the pattern of antibody reactivity to future infections and may account in part for individual heterogeneity in antibody specificity (29). Original antigenic sin may be beneficial to the host, allowing the immune system to ignore rare epitopes and to concentrate on epitopes present on the majority of invading parasites. Alternatively, if immunodominant or cross-reactive epitopes are not protective, original antigenic sin may favor the parasite by maintaining high levels of nonprotective antibodies and protecting more vulnerable epitopes.
These ideas leave the significance of the extensive polymorphism of MSP-2 unresolved. If many (or most) polymorphisms do not confer antigenic specificity and are thus not a mechanism for immune evasion, what is their purpose? One explanation may be that much of the polymorphism is due to random (and neutral) diversification of the population but that occasional mutations generate novel serogroups that are subject to immune selection. Immune selection implies that anti-MSP-2 antibodies can either prevent infection or reduce transmission of P. falciparum. Repeated reinfection in the presence of cross-reactive anti-MSP-2 antibodies in the cohort of Ghanaian children (22) suggests that anti-MSP-2 antibodies do not confer complete protection from infection, but the very low parasite densities seen in such children may indicate that anti-MSP-2 antibodies are able to limit parasite replication, which may have implications for transmission.
In summary, this study has revealed an extensive serological cross-reactivity of genetically distinct variants within the two dimorphic families of MSP-2. Within a family, variants can be grouped into a small number (two or three) of serogroups on the basis of recognition by cross-reactive antibodies. The data imply that the antigenic polymorphism of MSP-2 may be less extensive than anticipated from DNA sequences and strengthen the argument for investigation of MSP-2 as a realistic target for vaccine-induced immunity.
This work was funded by The Wellcome Trust (grant GR040328).
Present address: The Eilean Ban Trust, Kyleakin, Isle of Skye, Scotland, United Kingdom. ![]()
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