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Infection and Immunity, August 2003, p. 4304-4312, Vol. 71, No. 8
0019-9567/03/$08.00+0 DOI: 10.1128/IAI.71.8.4304-4312.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia 30322,1 Laboratories of Bacterial Pathogenesis, Medical Research Service, VA Medical Center, Decatur, Georgia 300332
Received 11 December 2002/ Returned for modification 28 February 2003/ Accepted 16 May 2003
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Over the past 20 years, hundreds of APs have been isolated from plants, invertebrates, and vertebrates (6) and are thought to represent an integral arm of the host innate immune response to infection (3, 4, 7, 9, 10, 13, 42). In support of this hypothesis, the recent study of Nizet et al. (25) provided direct evidence for the role of an AP, termed LL-37, in host defense against group A streptococci. Levels of bacterial susceptibility to APs appear to be genetically controlled, since mutations in genes involved in cell wall or membrane structure or those encoding transcriptional regulatory proteins can alter levels of bacterial susceptibility to the lethal action of APs (12, 29). To date, the overwhelming amount of work dealing with the genetics of bacterial AP susceptibility has used gram-negative pathogens, notably Salmonella enterica serovar Typhimurium. Progress has been made, however, in recent years with respect to the identification of genes in gram-positive pathogens that are involved in determining AP susceptibility. As an example, Peschel et al. (29-32) have provided evidence for the role of certain covalent modifications of teichoic acid and phosphatidylglycerol in the capacity of S. aureus to express decreased susceptibility to APs.
APs and larger antimicrobial proteins that are stored within the cytoplasmic granules of human polymorphonuclear leukocytes (PMNs) have been implicated in the nonoxidative killing of phagocytosed bacteria (7, 42). Studies dealing with the identification of PMN-derived APs can provide insight as to how pathogens might survive killing by PMNs during infection. In this respect, Reeves et al. (33) suggested that the neutrophil-derived lysosomal proteases cathepsin G (CG) and elastase carry the burden of intraphagosomal killing of phagocytosed S. aureus. CG has been known for over 25 years for its capacity to exert in vitro bactericidal activity against staphylococci by a mechanism independent of its serine protease activity (27, 28). CG killing of S. aureus was reported (27) to be a consequence of depolarization of the cytoplasmic membrane.
We have described a cationic AP derived from full-length CG that, like CG, has broad-spectrum antibacterial action in vitro (37, 38). This peptide (CG 117-136) corresponds to residues 117 to 136 of mature CG (34). Of all the 20-mer peptides that span the full-length CG protein, it was the only one that possessed bactericidal activity against S. aureus (37, 38). CG 117-136 contains two domains (residues 117 to 123 and 129 to 136) of the full-length protein that, by X-ray crystallographic analysis, are predicted to be surface exposed (14). Our investigators recently reported that the bactericidal activity of CG 117-136 can be significantly enhanced by covalent attachment of the C-12 saturated fatty acid dodecanoyl to the N or C terminus (39). Circular dichroism measurements suggested that in phosphate buffer both the modified and unmodified peptides are in a random coil, but the C-12 attachment potentiates the formation of an
-helical structure of CG 117-136 in model membranes (22). The formation of this structure paralleled damage to artificial membranes, a finding that is consistent with earlier studies that linked CG killing of S. aureus to membrane depolarization (27).
In order to gain more information regarding the mechanism(s) by which CG 117-136 exerts bactericidal activity against S. aureus, we sought mutants that expressed decreased susceptibility to its lethal action. By screening an erm(C) insertional library of S. aureus (strain ISP479), we identified a mutant that expressed decreased susceptibility to CG 117-136 and its C-12-modified variant. The Tn551 insertion in this mutant was located in an untranslated sequence between a putative promoter sequence and the translational start codon for the major cold shock gene cspA (8). This mutation as well as an insertional-deletion mutation in the cspA coding sequence impacted both the susceptibility of S. aureus to the CG peptides and its capacity to respond to the stress imposed by cold shock (growth at 15°C). We propose that the physiologic events associated with cold shock response gene expression of S. aureus are linked to its susceptibility to an AP. To our knowledge, this is the first report that has associated a bacterial stress response gene to AP susceptibility.
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TABLE 1. Bacterial strains and plasmids used in this work
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APs used and bactericidal assays. The preparation and purification of CG 117-136 and its modification by N-terminal covalent attachment of dodecanoyl have been described previously (37, 38). Prior to use in antimicrobial assays, all APs were dissolved in 0.01% (vol/vol) glacial acetic acid containing 0.2% (wt/vol) fatty acid-free bovine serum albumin (Sigma Chemical Co., St. Louis, Mo.) and stored at -30°C. The CFU reduction assay described previously (24, 37-41) was routinely employed. Results were calculated as average values ± standard deviations from at least three independent experiments, and the significance of values was determined by the paired Student t test.
Selection of Tn551-mediated mutants with increased resistance to CG 117-136. The Tn551 insertional library of strain ISP479 was kindly provided by J. Iandolo (University of Oklahoma Health Sciences Center, Oklahoma City, Okla.). It was grown overnight in TSB containing 10 µg of erythromycin (Ery) per ml and diluted 1:50 in fresh broth lacking Ery. This culture was grown at 37°C with shaking to mid-logarithmic phase and diluted to 107 CFU/ml in 0.03x-strength TSB. This sample was then exposed to two separate additions of 200 µg of CG 117-136. The sample was incubated with each addition of peptide for 2 h at 37°C and then plated onto TSA with Ery. A separate culture not treated with CG 117-136 was similarly handled. The viability of both samples was determined by dilution plating onto TSA containing Ery, and all agar plates were incubated overnight at 37°C. From the untreated sample, a control colony (termed SK2) was recovered and saved for subsequent use as a control in bactericidal and growth assays. The colonies from the AP-treated culture were pooled and reexposed to CG 117-36 as described above. This procedure was repeated twice, and 10 colonies were then individually selected for testing against CG 117-136 in the CFU reduction assay.
Transduction.
Phage 80
was propagated on strain SK1 and used to transduce the Tn551/cspA sequence with the Eryr marker to strains 8325-4 and SH1000 essentially as described by Shafer and Iandolo (36). Transductants were selected on TSA containing 10 µg of Ery per ml. Insertion of Tn551 within the 5'-untranslated region of cspA was confirmed by PCR (see below). The same technique was used to transduce the cspA::Km sequence from strain SK10 (see below) to strain SH1000; these transductants were selected on TSA containing 25 µg of kanamycin (Km) per ml. The replacement of the cspA gene by the Km cassette was confirmed by PCR.
Isolation of chromosomal and plasmid DNA. Chromosomal DNA from S. aureus strains was isolated from 1-ml samples containing the appropriate antibiotic from either mid-logarithmic or overnight cultures grown in TSB at 37°C with shaking. The DNeasy kit (Qiagen, Valencia, Calif.) was used with the following changes: lysostaphin at 50 µg/ml replaced the lysozyme in the required lysis buffer, incubation at 37°C was done for 1 h, and 4 µl of RNase A was added to each sample after lysis and incubated at room temperature for 10 min. The manufacturer's suggested protocol was then followed with elution by 200 µl of buffer AE applied to the spin column and the eluate reapplied to the column for a second elution. High-copy-number plasmids were extracted from 3 ml of Luria-Bertani (LB) overnight cultures of E. coli host cells using the standard Qiagen mini-preparation protocol. Medium- to low-copy-number plasmids [pBT2(ts), pSPTI81(ts), and their constructs] were extracted from 5 ml of TSB overnight cultures of S. aureus strains also by using the Qiagen mini-preparation technique (Qiagen). However, prior to the addition of the P2 lysis buffer, the cell pellet was suspended in 250 µl of P1 buffer plus 50 µg of lysostaphin/ml and incubated at 37°C for 1 h. High-copy-number plasmids, pCR2.1, pUC18, and their constructs, were eluted from the spin column with 50 µl of EB buffer. Medium- to low-copy-number plasmids [pSPT181(ts), pBT2(ts), and their constructs] were eluted from the spin column with 30 µl of EB buffer after a 1-min soak, and the eluate was reapplied to the column for another minute before the final spin and collection. Restriction digests were carried out with the appropriate enzymes and buffers (New England Biolabs, Beverly, Mass.).
Southern hybridization. Five-microgram aliquots of chromosomal DNA samples were digested with EcoRI and subjected to agarose gel electrophoresis. After gel electrophoresis and transfer, the blot was probed with a digoxigenin-labeled (Roche, Indianapolis, Ind.) 1.2-kb HindIII fragment of the transposase gene of the Tn551 insertion element in pIM36 (kindly provided by J. Iandolo).
Identification of the Tn551 insertion sites. A combination of the techniques of restriction site PCR (RS-PCR) (35) and multiplex restriction site PCR (mRS-PCR) (43) was used to identify the insertion site of Tn551 at both the 5' and 3' ends of the element. This technique utilized a set of nested primers for the Tn551 element and three separate restriction site primers for EcoRI, HindIII, and BamHI (Table 2). The restriction site primers and oligomers were designed according to the pattern T7-phage promoter sequence-NNNNNNNNN-restriction site sequence. In brief, RS-PCRs utilized the restriction site primers for EcoRI, BamHI, and HindIII (Table 2) that were individually paired with the most distal Tn551 nested primer from its 5' or 3' junction for the initial PCR with chromosomal DNA from strain SK1. The thermal cycler program was 94°C for 5 min, 94°C for 1 min, 55°C for 1 min, and 72°C for 3 min for 30 cycles, followed by 72°C for 10 min. The second RS-PCR was carried out with the same group of RS-PCR primers paired with the next Tn551 nested primer and the PCR template cDNA from the first RS-PCR. Distinct bands of PCR product were gel purified and subjected to automated DNA sequencing using a final Tn551 nested primer (Table 2). After the general location of the Tn551 insertion site was identified in strain SK1, a specific Tn551 primer, Tn515209, upstream of the insertion site and the specific cspA primer CSP3407 downstream of the insertion site were used to PCR amplify the junction of the Tn551 insertion element and the cspA sequence. This product was then subjected to bidirectional sequencing to confirm the exact insertion site. Automated DNA sequencing was performed by the DNA Sequencing Facility of Emory University.
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TABLE 2. Primers used for Tn551 insertion sites determination, complementation and insertion-deletion analysis, and RT-PCR
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transformant and digested with SmaI. The SmaI fragment from pUC18K containing the 850-bp nonpolar Km cassette aphA-3 (23) was gel purified and ligated into the SmaI-linearized pUCSKO, and transformants of E. coli DH5
were recovered by selection on LB agar plates containing 30 µg of Km per ml. A representative Km-resistant (Kmr) colony was grown, and its DNA plasmid (pUCSKOKm) was prepared as described above. The correct orientation of the Km cassette was verified by PCR using primers Km5447 and KO3228. In order to create the deletion-insertion in S. aureus control strain SK2, the CSKOKM insert of pUCSKOKm was removed by restriction digestion with PstI and BamHI, gel purified, and ligated into the linearized temperature-sensitive shuttle vector pSPT181(ts) (16). The ligated construct (pSPCSKOKM) was transformed into E. coli DH5
cells with selection on LB agar with 30 µg of Km per ml. The presence of both the pSPT181(ts) vector and the CSKOKm insert was verified from a selected Kmr colony by restriction digest analysis. The new construct (pSPCSKOKm) was then electroporated (1) into S. aureus RN4220, and recovered plasmid DNA from an electroporant was introduced into strain SK2. The protocol of Janzon and Arvidson (16) was followed to generate a double crossover deletion-insertion of the Km cassette for the cspA coding sequence of the S. aureus control strain SK2. In this case, tetracycline (Tet) (5 µg/ml) in TSA and Km (25 µg/ml) in TSA were used to select clones at the nonpermissive temperature, which carried the single crossover of the construct pSPCSKOKm into the chromosome of SK2. The Tet-sensitive (Tets) and Kmr phenotype was used to select clones that had lost the vector pSPT181(ts) and retained the Km cassette at the nonpermissive temperature. The presence of the Km cassette and loss of the cspA coding region in the new construct (SK10) were confirmed by PCR.
Complementation analysis.
A 548-bp segment of the cspA gene of S. aureus strain SK2 was generated by PCR using the primers PSTCSP5 and BAMCSP3 (Table 2). The sequence of the PCR product was confirmed, and the product was treated with PstI and BamHI and ligated into identically digested pUC18 to form the construct pUCSA. Because the copy number of the construct pUCSA was very low in an E. coli DH5
background, it was necessary to carry out a CsCl plasmid purification from a 500-ml culture grown in LB with 50 µg of ampicillin per ml in order to obtain enough cspA insert to ligate the 548-bp PstI- and BamHI-restricted fragment into the temperature-sensitive shuttle vector pBT2(ts) (5). This construct was termed pBCSA. After sequence confirmation of the insert in pBCSA, the construct was transformed into S. aureus strain RN4220 and subsequently into SK10 for complementation of the deletion-insertion of cspA in strain SK10.
RT-PCR. In order to determine the specific difference in the quantity of cspA RNA that may be responsible for the variation in susceptibility of the SK1 mutant to the APs and to cold shock, samples of both SK1 and SK2 were collected during a cold shock experiment. A 20-ml sample of each culture at 37°C was collected at the split point of the cold shock experiment (OD600 of 0.550 to 0.650), followed by collection of 20-ml samples at 2 h from both the 37°C and 15°C cultures. The samples were centrifuged at 6,000 xg for 10 min, decanted, and frozen at -70°C. The CFU per milliliter for the initial split sample was determined by serial and plate dilutions on TSA. RNA was extracted using the RNeasy Midi kit from Qiagen, Inc. The manufacturer's protocol was followed, with the suspension of cells at 5.5 x 108 to 1.0 x1010 CFU in Tris-EDTA buffer, the addition of lysostaphin at 50 µg/ml, and a 37°C incubation for 1 h. SuperScript II RNase H reverse transcriptase (Invitrogen, Inc.) was used with 200 ng of RNA for each sample according to the manufacturer's instructions for first-strand cDNA synthesis, while AmpliTaq (Applied Biosystems) was used to generate the amplified PCR transcriptional products. Primers for the 16S rRNA control transcript were 516S547 and 316S972. Primers for the cspA transcriptional product were CSP5237 and CSP3407 (Table 2). The relative amounts of transcript were determined from equal volumes (10 µl of a 50-µl reaction volume) of the reverse transcription-PCR (RT-PCR) product. Samples were electrophoresed into a 1.2% agarose gel containing ethidium bromide. The bands of product were photographed using a Stratagene transilluminator 4000 and a Kodak DC 290 digital camera. The Kodak 1D analysis program was used to estimate pixel intensities of equal areas of each of the 12 bands.
Nucleotide sequence accession number. The nucleotide sequence of the S. aureus cspA gene was assigned accession number AF259960 in GenBank.
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transduction of the Ery resistance marker of Tn551 from strain SK1 to strain 8325-4 confirmed linkage of the insert with increased resistance to the peptide (data not presented). This result indicated that the peptide resistance property of strain SK1 was most likely due to the Tn551 insertion and not that of an unlinked, secondary mutation.
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FIG. 1. Susceptibility of strains SK1 and SK2 to CG 117-136. (A) The log10 reduction in viability (CFU per milliliter) when strains SK1 and SK2 were incubated with CG 117-136 (200 µg/ml). Values are averages from three independent experiments, with the standard deviation shown above each bar. The difference in susceptibility was significant (P = 0.012). (B) Susceptibility of strains SK1 ( ) and SK2 ( ) to different concentrations of CG 117-136.
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FIG. 2. The major cold shock gene, cspA, of S. aureus. (A) The putative -10 and -35 sites for the promoter and the Shine-Dalgarno (S.D.) site of cspA are labeled and underlined. The putative 5' UTR is shown in bold and covers a region from the -10 site to the Shine-Dalgarno site. A down-pointing arrow designates the Tn551 transposon insertion site, located within the 5' UTR. The start site of translation is labeled and marked with a +1. The putative coding sequence is underlined. The amino acid sequence is identified by the single-letter designation under the coding sequence, with an asterisk for the stop codon. After the coding sequence, a putative hairpin termination site (T.S.) is labeled above the sequence and underlined. (B) The chromosomal arrangement of identified and unidentified genes and their protein products located upstream and downstream of the major cold shock gene, cspA. A down-pointing arrow designates the Tn551 transposon insertion site.
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FIG. 3. Alignment of the major cold shock proteins of S. aureus (CspA), B. subtilis (CspB), and E. coli (CspA). The amino acid sequence of S. aureus CspA is shaded along with identical amino acids in the B. subtilis and E. coli protein sequences. A missing amino acid is noted by a dash. A consensus sequence is located over each section of the alignment and is underlined.
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FIG. 4. Growth of S. aureus strains SK1 (cspA::Tn551), SK2 (Control), and SK10 (cspA::Km) at 37 and 15°C. (A) The growth curves began when the cultures were split at mid-logarithmic phase (OD600 = 0.55 to 0.65) at 37°C and continued for 24 h at both 37 and 15°C. The ODs of samples were measured at the split and at 1, 2, 4, and 24 h after the initiation of cold shock. (B) The expanded cold shock growth curves from panel A of strains SK1, SK2, and SK10 at 15°C after the split at mid-logarithmic phase. Samples were measured at the split and at 1, 2, and 4 h. All ODs for 15°C growth are reported at an initial OD600 of 0.600. ( ), SK1 at 37°C; , SK1 at 15°C; , SK2 at 37°C; , SK2 at 15°C; , SK10 at 37°C; , SK10 at 15°C.
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FIG. 5. RT-PCR analysis of cspA and 16S rRNA transcripts in the strains SK1 and SK2. (Upper panel) Culture samples for RNA extraction were taken at mid-logarithmic phase, 2 h post-mid-log at 37°C, and 2 h post-mid-log at 15°C. RT-PCR was performed with 200 ng of RNA for both cspA and 16S rRNA reactions. (Lower panel) Changes in cspA transcription were estimated from the ratio of cspA band intensity to that of the 16S rRNA band intensity. The brackets represent induction of cspA, calculated as the ratios obtained from the 15°C versus 37°C samples at the 2-h time point.
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We expressed wild-type cspA in trans in strain SK10 to determine if it would complement its cspA insertional-deletion mutation and to ascertain what impact cspA copy number might have on AP susceptibility levels and the ability of S. aureus to respond to the stress imposed by cold shock. A plasmid construct (pBSCA) bearing the cspA-coding region and 214 bp of upstream and 134 bp of downstream noncoding DNA was introduced into strain SK10. In a separate electroporation reaction, the vector plasmid (pBT2) was first introduced into strain RN4220, and from this host it was electroporated into strain SK10. Because pBT2 is temperature sensitive for replication (5), bactericidal and temperature-shift growth assays were performed at 30°C. The results revealed that SK10(pBSCA) was less resistant to the C-12-modified variant of CG 117-136 (CG 117-136C12) than strain SK10(pBT2) (Fig. 6). As is shown in Fig. 7, strain SK10(pBSCA) grew more rapidly at 15°C than strain SK10(pBT2), indicating that the presence of cspA was needed for a rapid acclimation to cold shock.
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FIG. 6. Susceptibility of strains SK10(pBCSA) and SK10(pBT2) to CG 117-136C12. Shown are the log10 values for the reduction in viability (in CFU per milliliter) of strains incubated with CG 117-136C12 (25 µg/ml). Values are averages from three independent experiments, with the standard deviation shown above each bar. The difference in susceptibility was significant (P = 0.002).
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FIG. 7. Cold shock growth curves of strains SK10(pBCSA) and SK10(pBT2) at 15°C after the split at mid-logarithmic phase (OD600 = 0.55 to 0.65). The ODs of samples were measured at the split and 1, 2, 3, and 4 h after the initiation of cold shock. , SK10(pBCSA); , SK10(pBT2).
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TABLE 3. SigB-active strains of S. aureus have decreased susceptibility to CG 117-136C12 due to cspA mutations
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CspA of E. coli and CspB of B. subtilis have been studied in detail with respect to their capacities to regulate gene expression and their production at 37 and 15°C; these topics have been extensively reviewed (44). CspA has the capacity to regulate genes at the level of transcription by behaving as a single-strand DNA-binding protein. It also regulates protein synthesis by its RNA-binding ability, which prevents formation of stable and unfavorable secondary structures in mRNA. Moreover, the capacity of CspA to regulate gene expression is likely to be temperature independent because, although it is overproduced during cold shock, a considerable amount is present in bacteria at 37°C. We have recently examined the impact of loss of CspA in S. aureus strain COL and found that loss of CspA decreased the susceptibility of strain COL to CG 117-136 (data not presented). Interestingly, both strains were equally sensitive to the bactericidal action of two unrelated APs, LL-37 and protegrin-1 (MICs of 50 and 3.9 µg/ml, respectively), suggesting that the mechanisms of staphylococcalcidal action of these APs may differ.
Loss of CspA in strain COL resulted in a change in the levels of at least 14 bacterial proteins, as judged by comparison of two-dimensional isoelectric focusing-sodium dodecyl sulfate-polyacrylamide gel electrophoresis profiles, regardless of whether the CspA+ or CspA- derivatives of strain COL were grown at 37 or 15°C (data not presented). A significant finding with these strains (and that of strains Newman and SH1000) is that loss of CspA resulted in a concomitant loss of pigment production, which was restored by complementation of the cspA gene in trans (S. Katzif and W. M. Shafer, unpublished data). Because there are numerous changes in protein content due to loss of CspA in S. aureus strains grown at 37 or 15°C, it is not yet possible to determine how many are linked directly to enhanced resistance to CG 117-136 or its C-12-modified variant. How might loss or decreased production of CspA impact levels of S. aureus susceptibility to CG 117-136? It is clear that CspA homologs in other bacteria (44) can impact transcription of certain genes or translation of their respective transcripts. It is possible that the products of these CspA-regulated genes might impact expression of other genes involved in susceptibility to this AP. Alternatively, these proteins could either modify its binding to the bacterial surface or alter its ability to insert into the bacterial cytoplasmic membrane due to changes in membrane structure and/or fluidity. Testing of these hypotheses will require the identification and characterization of the CspA-regulated genes and confirmation of their linkage with susceptibility to CG 117-136.
Recent studies by Nizet et al. (25), Reeves et al. (33), and Belaaouaj et al. (2) have emphasized the importance of APs and the lysosomal serine proteases CG and elastase in neutrophil-killing bacteria. These agents exert bactericidal activity by nonoxidative mechanisms, possibly through depolarizing the cytoplasmic membrane. While the significance of this killing process has been underappreciated due to the presumed potency of the oxidative killing systems, these more recent studies suggest that nonoxidative killing systems carry the burden of intraleukocytic killing of bacteria. With respect to S. aureus, the importance of PMNs can be surmised because neutropenic patients are at increased risk for infection. Accordingly, continued studies that determine the mechanism by which APs and serine proteases exert staphylococcalcidal activity are warranted. Based on our results with CspA, we suggest that genes subject to its regulation encode proteins that modulate CG killing of S. aureus by human PMNs.
This work was supported by National Institutes of Health grant AI-43316 (W.M.S.) as well as funds from the VA Medical Research Service. W.M.S. is the recipient of a Senior Research Career Scientist Award from the VA Medical Research Service.
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-lysin gene (hld) in the regulation of virulence genes by the accessory gene regulator (agr) in Staphylococcus aureus. EMBO J. 9:1391-1399.[Medline]
B in Staphylococcus aureus reveals its function as a global regulator of virulence genes. J. Bacteriol. 180:4814-4820.
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