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Infection and Immunity, March 2004, p. 1230-1239, Vol. 72, No. 3
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.3.1230-1239.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Australian Bacterial Pathogenesis Program, Department of Microbiology, Monash University, Victoria 3800,1 Microbiological Research Unit, Murdoch Childrens Research Institute and Royal Children's Hospital, Parkville 3052,2 Australian Bacterial Pathogenesis Program, Department of Microbiology and Immunology, University of Melbourne, Victoria 3010, Australia,3 Centre for Molecular Microbiology and Infection, Department of Biological Sciences Flowers Building, Imperial College London, London SW7 2AZ, United Kingdom4
Received 3 September 2003/ Returned for modification 12 November 2003/ Accepted 8 December 2003
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In addition to LEE, many A/E pathogens produce fimbriae that are essential for colonization of the host. Human strains of EPEC produce a type IV bundle-forming pilus, BFP that is essential for full virulence and is required for bacterial microcolony formation on the host cell surface (7). BFP may also act as an initial adhesin in vivo (5). Strains of REPEC also express fimbriae that are essential for colonization. These include AF/R1 (adherence factor/rabbit 1) encoded by an 86-MDa plasmid of REPEC O15:H- strain RDEC-1; AF/R2, which is produced by REPEC O103:H2; and Ral of REPEC O15:H- strain 83/39 that is also plasmid encoded (1, 23, 34). All of these fimbriae enhance the virulence of their corresponding strains.
The recently determined genome sequence of EHEC O157:H7 EDL933 has revealed several fimbrial gene clusters, including two encoded by O-islands 141 and 154. These are predicted to encode homologs of long polar fimbriae (LPF) (11, 22), and are located adjacent to yhjW and pstS, respectively. LPF were first described in Salmonella enterica serovar Typhimurium and have been shown to direct the attachment of serovar Typhimurium to murine Peyer's patches in vivo (3, 4). Their expression is controlled by phase variation, which provides a means of evading cross immunity among different Salmonella serotypes (21). O-island 141 of EHEC O157:H7 encodes fimbriae that are similar in structure and length to LPF from serovar Typhimurium but do not show a polar distribution (30). The lpfABCC'DE gene cluster is unique to EHEC O157:H7 and EPEC O55:H7 and is able to mediate microcolony formation by EHEC O157:H7 and adherence of nonfimbriated E. coli ORN172 to epithelial cells (30). Recently, we identified a novel lpf gene cluster in EHEC O113:H21 that enhanced bacterial adherence to Chinese hamster ovary (CHO-K1) epithelial cells (8). This locus has the same chromosomal location as O-island 154 in EHEC O157:H7 and was termed lpfO113. It is also found in several serotypes of EPEC and EHEC, including O111:H- and O26:H11.
We describe here the identification of two lpf gene clusters in REPEC strain 83/39 that occupy the same chromosomal location in REPEC as O-islands 141 and 154 in EHEC O157:H7. lpfR154 was identical in nucleotide sequence to the gene cluster, lpfO113 from EHEC O113:H21, whereas lpfR141 was a novel locus that encoded long fine fimbriae similar to the LPF from EHEC O157:H7. In addition, lpfR141 appeared to play a role in the early stages of REPEC infection of rabbits and was essential for the development of severe diarrhea.
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Red Recombinase from plasmid pKD46, 100 mM arabinose was added to LB broth (6). |
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TABLE 1. Bacterial strains and plasmids used in this study
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PCR procedures and cloning of lpfR141 and lpfR154. PCR amplification was performed on 500 ng of template DNA with ca. 1 µg of each primer per 100-µl reaction. PCR primers used in the present study are listed in Table 2. Amplification of components of the lpf gene cluster was performed under the following conditions: 2 min at 94°C, followed by 30 cycles of 1 min at 94°C, 50 s at the appropriate annealing temperature (Table 2) and 1 min at 72°C. This was followed by an extension time of 5 min at 72°C. Where required DIG-dUTP was incorporated into the PCR according the manufacturer's instructions (Roche Diagnostics, Mannheim, Germany). O-islands lpfR141 and lpfR154 from REPEC 83/39 were amplified from genomic DNA by using the Expand Long Template PCR system (Roche) and the primer pairs O-141F/O-141R and O-154F/O-154R (8). The final 6.0- and 5.5-kb products were purified by using the Concert Nucleic Acid Purification System (Gibco-BRL, Rockville, Md.) and cloned into pCR-Script for determination of DNA sequence.
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TABLE 2. Sequences of PCR primers used in this study
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Construction of lpf mutants of REPEC O15:H- (83/39).
Insertional mutations were created in lpfR141 and lpfR154 by using the
Red Recombinase method, which promotes homologous recombination of linear DNA into the bacterial host chromosome (6). To construct a lpfR141 mutant, a chloramphenicol resistance gene from pACYC184 was ligated into a XhoI site of lpfBR141. In a similar manner, a kanamycin resistance gene was ligated into a PstI site of lpfCR154. After amplification of the inactivated genes, PCR products were then treated with DpnI to remove template DNA. The thermosensitive plasmid, pKD46, was introduced into REPEC 83/39, and electrocompetent cells expressing Red Recombinase were prepared. Approximately 50 ng of lpfBR141:cm or lpfCR154:km PCR product was then electroporated into REPEC 83/39(pKD46). Chloramphenicol- or kanamycin-resistant clones were assessed for correct incorporation of the resistance marker into target lpf genes by PCR. In order to create a double-mutant strain, the lpfCR154:km REPEC 83/39 mutant containing pKD46 was electroporated with lpfBR141:cm PCR product. The single mutants were designated REPEClpfR141 and REPEClpfR154, and the double mutant was designated REPEClpfR141/R154.
RNA extraction and RT-PCR technique. Bacterial strains were grown to exponential phase and whole-cell RNA was extracted by using Trizol reagent (Gibco-BRL) according to the manufacturer's instructions. RNA was treated with DNase and then purified by using the RNeasy mini kit (Qiagen), including a second DNase treatment according to the manufacturer's protocol. cDNA was generated from the eluted RNA by reverse transcription (RT) by using random hexamers and Superscript II RNase H- reverse transcriptase (Invitrogen) according to the manufacturer's instructions. PCR of cDNA and a no RT control was performed with Taq DNA polymerase as described above.
Quantitative adherence and FAS test. For quantitative assessment of adherence, adherence assays were performed with CHO-K1 cells as described previously (8, 32). The results were expressed as the percentage of recovered bacteria compared to the original inoculum and were the mean of duplicate wells from five independent experiments. For fluorescent actin staining (FAS) assays, CHO-K1 cells were cultured in 24-well tissue culture plates on 12-mm-diameter glass coverslips, infected with bacterial strains and stained with fluorescein isothiocyanate-phalloidin (Sigma) as described previously (15).
Infection of rabbits. For in vivo assays of virulence, 4- to 5-week-old New Zealand White rabbits were infected with 4 x 106 CFU of test strains, including wild-type REPEC 83/39, the single mutant REPEClpfR141, and the double mutant REPEClpfR141/R154. The inoculum was prepared from strains grown stationary overnight in Penassay broth (Difco Laboratories, Detroit, Mich.) and resuspended in phosphate-buffered saline as described previously (1, 16). Thirty minutes before inoculation, animals were treated with sodium bicarbonate and divided into groups of 5. Rabbits were examined daily for 20 days and monitored for body weight and evidence of diarrhea. Diarrhea severity was assessed on a scale of 0 to 4, where very mild diarrhea was assigned a value of 1 and severe diarrhea was scored as 4. We defined very mild diarrhea as some signs of loose stools on the rectal swab and possible staining of the fur around the anus and severe diarrhea as extensive soiling of the rear and hind limbs, fluid on the rectal swab, and the presence of diarrheic feces in the cage. Each day after infection, cotton swabs were used to sample contents from the distal 3 cm of the rectum. The material collected in this manner was emulsified in 0.5 ml of phosphate-buffered saline, and serial dilutions were plated onto MacConkey agar with appropriate antibiotic selection. Previous studies in our laboratory have shown that the number of bacteria obtained in this way corresponds closely to the number of bacteria obtained from the colon and rectum at necropsy.
Biopsies for examination by light and electron microscopy were taken from the duodenum, jejunum, ileum, cecum, and colon from animals that were killed because they were moribund and from those killed at the end of the observation period.
Electron microscopy and histology. To visualize fimbriae encoded by lpfR141, pCR-Script carrying lpfR141 was transformed into a nonfimbriated E. coli strain, ORN103 (8, 29). Transformants were grown stationary in LB broth at 37°C overnight, and the bacteria were allowed to adhere to a 300-mesh copper grid (Alltech, Deerfield, Ill.). Fimbriae were visualized by negative staining with 1.0% ammonium molybdate, and grids were analyzed by using a Phillips CM12 electron microscope (FEI Co., Hillsboro, Oreg.) at an accelerated voltage of 60 kV.
Biopsies taken from experimentally infected animals were fixed in 2.5% glutaraldehyde, followed by postfixation in 2.5% osmium tetroxide for 1 h. After dehydration in a graded acetone series, the tissue was embedded in Epon-Araldite epoxy resin. Thin (0.5 µm) sections were stained with 10% uranyl acetate and 2.5% lead citrate before they were viewed under a Phillips CM12 electron microscope at 60 kV. For light microscopic analysis, intestinal sections were fixed in 10% buffered formalin solution before being dehydrated in an ethanol series and embedded in paraffin. Thick sections (4 µm) were cut and stained with 1% methylene blue.
Statistical analysis. Statistical analysis of results was performed by using InStat version 3.0 and Prism version 3.0 (GraphPad InStat Software, Inc., San Diego, Calif.). A P value of <0.05 was taken to indicate statistical significance.
Nucleotide sequence accession number. The nucleotide sequence presented in the present study has been assigned GenBank accession no. AY156523.
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The predicted amino acid sequences of lpfR141-encoded components shared significant similarity with proteins involved in fimbrial biogenesis, in particular the LPF proteins (Table 3). Based on the predicted and known functions of the proteins encoded by other lpf and type I fimbrial operons, the predicted function of each protein is listed in Table 3. As expected, the putative chaperone (LpfBR141) and outer membrane usher (LpfCR141) were highly conserved among the different gene clusters, whereas the putative structural components, LpfAR141, LpfDR141, and LpfER141, were more variable (Table 3). Overall, the predicted components of lpfR141 were most related by amino acid identity to the lpf products of serovar Typhimurium and lpfABCC'DE products of EHEC O157:H7.
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TABLE 3. Extent of amino acid sequence identity and similarity of components lpfR141 from REPEC 83/39 with their closest homologuesa
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TABLE 4. Distribution of lpfDR141 among different strains of REPEC, EPEC, and EHEC
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FIG. 1. Expression of fimbriae in E. coli ORN103(pCR-Script:lpfR141) visualized by transmission electron microscopy. Magnifications, x60,000 (A) x75,000 (B). Bacteria were grown stationary in Luria broth overnight and stained with 1.0% ammonium molybdate. Arrows indicate long fine fimbriae.
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FIG. 2. RT-PCR analysis of lpfR141. (A) Schematic organization of the lpfR141 operon and location of primers used for RT-PCR. (B) RT-PCR analysis of E. coli ORN103(pCR-Script:lpfR141) cDNA. Lanes 1 to 3, primers LPFAF and LPFAR; lanes 4 to 6, primers LPFCF and LPFCR; lanes 7 to 9, primers LPFDF and LPFDR; lanes 10 to 12, primers LPFEF and LPFER. (C) RT-PCR analysis of E. coli ORN103(pCR-Script:lpfR141) cDNA. Lanes 1 to 3, primers LPFAF and LPFBR. (D) RT-PCR analysis of REPEC 83/39 cDNA. Lanes 1 to 3, primers LPFDF and LPFDR. D, DNA control PCR; + and -, presence or absence of the RT reaction, respectively. The sizes of the PCR products are indicated.
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Virulence of the REPEClpfR141 and REPEClpfR141/R154 mutants for rabbits. To determine whether lpfR141 and lpfR154 contributed to the virulence of REPEC for rabbits, the single REPEClpfR141 and double REPEClpfR141/R154 mutants were compared to wild-type REPEC 83/39 in the REPEC/rabbit model of infection. Three groups of five rabbits received 4 x 106 CFU of the test strains, and animals were observed for 20 days to monitor body weight, bacterial colonization, and severity of diarrhea. No significant difference in body weight or mortality rate between wild-type REPEC 83/39 and the lpf mutants was observed (Fig. 3 and Table 5). However, on the first 2 days after inoculation, both lpf mutants of REPEC 83/39 were shed in significantly lower numbers than wild-type REPEC 83/39 (Table 5). On day 1, the mean log10 CFU values per swab for REPEClpfR141 and REPEClpfR141/R154 were 1.26 ± 1.56 and 1.9 ± 1.35, respectively, which were significantly lower than the mean log10 CFU per swab for the wild-type strain of 3.6 ± 0.88 (P = 0.02 and 0.04, respectively [two-tailed, Student t test]). On day 2, the mean log10 CFU values per swab of REPEClpfR141 and REPEClpfR141/R154 were 2.76 ± 1.45 and 2.6 ± 1.55, respectively, compared to the mean log10 CFU per swab for the wild-type strain of 5.00 ± 1.35 (P = 0.04 and 0.03, respectively). No difference in excretion was observed between the single and double lpf mutants, however, suggesting that the reduction in fecal shedding of the mutants was mainly due to interruption of lpfR141. After day 2 postinoculation, there was no significant difference between excretion of wild-type REPEC 83/39 and the lpf mutants, indicating that the attenuation of the lpf mutants occurred only in the early stages of infection.
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FIG. 3. Effect of infection with various REPEC strains on rabbit body weight. The data presented are the mean percentages of initial weights for rabbits infected with wild-type REPEC 83/39 ( ), the single mutant REPEClpfR141 ( ), or the double mutant REPEClpfR141/R154 (). One death occurred on each of days 6, 9, and 13 for the REPEC 83/39 group; on days 8, 11, and 15 for the REPEClpfR141 group; and on days 9 and 14 for the REPEClpfR141/R154 group.
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TABLE 5. Log10 CFU per swab for rabbits infected with REPEC 83/39, REPEClpfR141, and REPEClpfR141/R154a
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Histological examination of rabbits infected with REPEClpfR141 and REPEClpfR141/R154 mutants. Intestinal sections taken from symptomatic rabbits that had been infected with one of the three test strains and killed on day 12 to 14 were examined by bright-field microscopy and transmission electron microscopy to determine the extent and location of bacterial adherence to the gut and A/E lesion formation. Intestinal sections were prepared from the small intestine (duodenum, jejunum, and ileum) and large intestine (colon and cecum). Despite the presence of high bacterial counts in all sections of the gut from individual animals (data not shown), intimate bacterial adherence to the gut mucosa was only observed in sections obtained from the colon (data not shown) and cecum (Fig. 4). At the time the biopsies were taken, namely, at the height of the illness, there was no difference in the level of adherence or tissue distribution of wild-type REPEC 83/39 and the two mutants, REPEClpfR141 and REPEClpfR141/R154. Moreover, wild-type REPEC 83/39 and both the single lpfR141 and double lpfR141/R154 mutants formed A/E lesions in the colon (data not shown) and cecum that were indistinguishable in morphology, location, and number among the three strains (Fig. 5).
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FIG. 4. Light micrographs of 4-µm-thick sections of rabbit cecum stained with methylene blue from animals infected with wild-type REPEC 83/39 (A), the single mutant REPEClpfR141 (B), and the double mutant REPEClpfR141/R154 (C) sacrificed on days 13, 15, and 14 after inoculation, respectively. Arrows indicate bacteria closely adherent to the intestinal mucosa. Intimate adherence was not seen in stained cecal sections from uninfected control rabbits (data not shown).
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FIG. 5. Transmission electron micrographs of cecal mucosa from rabbits infected with wild-type REPEC 83/39 (A), the single mutant REPEClpfR141 (B), and the double mutant REPEClpfR141/R154 (C) sacrificed on days 13, 15, and 14 after inoculation, respectively. Note the presence of extensive A/E lesions in all fields. Magnification, x10,000.
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The closely related rabbit A/E pathogen, REPEC, serves as a useful model for the study of EPEC and EHEC mediated disease. Strains of REPEC possess the LEE pathogenicity island but lack BFP and instead express strain-specific fimbrial adhesins (AF/R1, AF/R2, and Ral) that contribute to virulence (13, 28). In addition to these plasmid-encoded fimbriae, we have now identified two chromosomal O-islands in REPEC 83/39 that share predicted similarity and genome location with the LPF O-islands of EHEC O157:H7. One of these gene clusters, lpfR154, was identical to a fimbrial locus, lpfO113, that we recently identified in LEE-negative EHEC O113:H21 and which enhanced the ability of EHEC O113:H21 to adhere to CHO-K1 cells (8). The second O-island, lpfR141, encoded a novel sequence that was present in all REPEC strains examined, irrespective of serotype, and was also found in several human isolates of EHEC and EPEC. lpfR141 comprised five novel ORFs, lpfA to lpfE, that exhibited a similar genetic organization to O-island 141 from EHEC O157:H7 and the lpf gene cluster from serovar Typhimurium (3, 30). This included the presence of a putative stem-loop structure between lpfA and lpfB that is conserved among the three strains.
To determine whether lpfR141 was functional, we introduced the fimbrial gene cluster into a nonfimbriated E. coli strain, ORN103. This strain expressed all five genes and produced long, fine fimbriae on its surface, which were morphologically similar to LPF expressed by EHEC O157:H7 and serovar Typhimurium (3, 30). As observed for LPF from EHEC O157:H7, LPFR141 were not uniformly polar. Although we were unable to demonstrate that LPFR141 were produced by REPEC 83/39 in vitro, the expression of lpfDR141 in REPEC 83/39 was detected by RT-PCR. Nevertheless, we were unable to establish a phenotype for either REPEC LPF O-island in vitro since there was no apparent difference in the ability of wild-type REPEC 83/39 and the lpf mutants to adhere to cultured epithelial cells. The expression of lpfR141 in E. coli ORN103 also did not appear to increase the adherence of this strain in vitro (data not shown), although we have previously demonstrated that expression of lpfO113, which is identical to lpfR154, in E. coli ORN103, results in a twofold increase in bacterial adherence to CHO-K1 cells (8).
To determine whether there is a role for the LPF O-islands in the virulence of REPEC, we infected three groups of rabbits with a lpfR141 single mutant, a lpfR141/154 double mutant, and wild-type REPEC 83/39. Several disease parameters, including body weight, bacterial excretion, and diarrhea were monitored for 20 days to assess any alteration in the virulence of the lpf mutants compared to wild-type REPEC 83/39. In addition, the lpfR141 single mutant and the lpfR141/154 double mutant groups were compared to assess the relative contribution of lpfR154 to virulence. These studies revealed that animals that received the mutants did not suffer the same severity of diarrhea as the wild-type group, although they did lose comparable amounts of weight compared to rabbits infected with the wild-type strain, and appeared to suffer from wasting rather than typical watery diarrheal disease. Interestingly, rabbits that received the mutants showed histological evidence of A/E lesion formation that was identical in morphology, location, and extent compared to animals given the wild-type strain. These results indicated that the severity of diarrhea associated with infection by REPEC does not correspond with the extent of A/E histopathology and suggests that A/E lesion formation contributes to a wasting phenotype rather than to the development of severe diarrhea in the rabbit/REPEC model. These findings support other observations in our laboratory with a different mutant of strain 83/39 that the development of A/E lesions in rabbits does not correspond to the development of severe diarrhea (L. S. Taylor et al., unpublished data). Although transcomplementation of the mutants was not attempted in vivo, the construction of a single lpfR141 REPEC mutant, followed by the introduction of this mutation into the lpfR154 mutant to create the double mutant strongly suggested that the loss of phenotype we observed in rabbits was due to interruption of lpfR141. Our findings do not preclude a role for LPFR154 in disease, however, particularly if it acts in conjunction with or after LPFR141 in the pathogenic process.
Interestingly, rabbits infected with either the lpfR141 single mutant or the lpfR141/154 double mutant shed significantly fewer bacteria on days 1 and 2 postinoculation compared to rabbits infected with the parent strain. This suggests that lpfR141 may enhance early colonization of the rabbit intestine and, furthermore, that this step was important for the development of severe diarrhea. It is possible that the attenuation we observed was due to decreased bacterial adherence to a particular tissue type at these early time points, as demonstrated for serovar Typhimurium, for which LPF mediates adherence of the bacteria to murine Peyer's patches (4). Moreover, the majority of REPEC strains have been shown to colonize rabbit Peyer's patch epithelium, where they preferentially adhere to M cells (33). Although an investigation of the putative tissue tropism of LPFR141 was beyond the scope of the present study, an examination of the tissue specificity of wild-type REPEC 83/39 and the lpf mutants at early time points may reveal the basis of the attenuation observed for the lpfR141 mutants. Furthermore, the present study may provide some insight into the possible role of lpfABCC'DE in EHEC O157:H7 infection of humans.
This study was supported in part by funding from the Australian National Health and Medical Research Council, Monash University and the Murdoch Childrens Research Institute. H.J.N. is the recipient of an Australian Postgraduate Award.
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