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Infection and Immunity, April 2004, p. 2088-2100, Vol. 72, No. 4
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.4.2088-2100.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Wyeth Vaccines Research, Pearl River, New York 10965
Received 22 July 2003/ Returned for modification 5 September 2003/ Accepted 18 December 2003
| ABSTRACT |
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28-kDa lipoprotein called LP2086, was first observed within a complex mixture of soluble outer membrane proteins (sOMPs) following a series of fractionation, protein purification, and proteomics steps. Approximately 95 different neisserial isolates tested positive by Western blotting and PCR screening methods for the presence of the protein and the gene encoding LP2086. The strains tested included isolates of N. meningitidis serogroups A, B, C, W135, and Y, Neisseria gonorrhoeae, and Neisseria lactamica. To better understand the microheterogeneity of this protein, the 2086 genes from 63 neisserial isolates were sequenced. Two different subfamilies of LP2086 were identified based on deduced amino acid sequence homology. A high degree of amino acid sequence similarity exists within each 2086 subfamily. The highest degree of genetic diversity was seen between the two subfamilies which share approximately 60 to 75% homology at the nucleic acid level. Flow cytometry (fluorescence-activated cell sorting) analyses and electron microscopy indicated that the LP2086 is localized on the outer surface of N. meningitidis. Antiserum produced against a single protein variant was capable of eliciting bactericidal activity against strains expressing different serosubtype antigens. Combining one recombinant lipidated 2086 (rLP2086) variant from each subfamily with two rPorA variants elicited bactericidal activity against all strains tested. The rLP2086 family of antigens are candidates worthy of further vaccine development. | INTRODUCTION |
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-2,8-linked N-acetylneuraminic acid (polysialic acid) has structural similarity to human neural antigens (10, 15), raising potential safety concerns should N. meningitidis serogroup B glycoconjugate vaccines be used. These concerns have prompted examination of noncapsular vaccine approaches. Serogroup B outer membrane proteins (OMPs) in complexes and in vesicles have been developed as alternative vaccine antigens (23, 26, 40). One example of an OMP vaccine approach targets the serosubtype antigen PorA protein. Given PorA protein variability, a multivalent vaccine consisting of five or more serosubtypes will be needed to obtain >50% coverage against potential serogroup B disease in the United States (33, 42). Alternatively, highly conserved N. meningitidis serogroup B antigens have been sought and evaluated as vaccine candidates. Neisserial surface protein A (NspA) is a highly conserved membrane protein which elicits serum bactericidal antibodies that confer passive protection in animal models (22). Differences in surface expression of NspA, however, may limit anti-NspA complement-mediated bacteriolysis (27) of some N. meningitidis serogroup B strains. Genome-derived antigen, GNA33, a highly conserved lipoprotein with similarity to transglycosylase A from Escherichia coli (30), has been shown to elicit bactericidal antibody responses. Unfortunately, these appear to be the result of cross-reactivity with a variable loop of PorA (12). NadA, another novel surface antigen of N. meningitidis serogroup B, also has been evaluated as a vaccine candidate. Although NadA induces strong bactericidal antibodies and is protective in an infant rat model, the encoding gene is present in only 50% of N. meningitidis serogroup B isolates (7). Obviously, identification of an antigen that is present in every N. meningitidis serogroup B strain and that elicits broader cross-protection against multiple serosubtypes is a highly desirable goal for serogroup B vaccine development. Here, we report the identification of a neisserial outer membrane lipoprotein found in all N. meningitidis serogroup B strains tested. We describe the cloning, expression, and purification of recombinant lipoprotein LP2086 (rLP2086). A gene encoding one variant of LP2086 was identified in our analysis of the Sanger Institute N. meningitidis serogroup A Z2491 early release of genomic sequence in contig form. Recently, Masignani et al. reported similar findings with their genome-derived neisserial antigen, GNA1870 (24). We now show the existence of two distinct subfamilies of LP2086 based on amino acid sequence diversity derived from sequencing the LP2086 genes from 63 neisserial isolates. We demonstrate the utility of recombinant forms of this protein as immunogens which elicit antibodies capable of inducing bactericidal activity against many N. meningitidis strains expressing different serosubtype antigens. Recombinant LP2086 (rLP2086) antigens elicit broad cross-reactivity against multiple serosubtype strains and will simplify vaccine development for N. meningitidis serogroup B disease.
(A portion of our work on the discovery of this novel N. meningitidis vaccine candidate was presented at the International Pathogenic Neisseria Conference held in Oslo, Norway, in September 2002 [4, 11].)
| MATERIALS AND METHODS |
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Amplification of the 2086 gene from neisserial isolates.
Initial identification of the full-length
860-bp ORF 2086 from N. meningitidis serogroup B strain 8529 relied on PCR using the primer pair 2086NDE and 3STP2086 (Table 2 describes all primer sequences), based on the Sanger Institute N. meningitidis serogroup A Z2491 genomic sequence (29) and primary internal amino acid sequence data from a protein isolated from strain 8529 (4). Thereafter, an approximately 900-bp section of the genome including the 2086 gene and immediate flanking regions was amplified from a variety of N. meningitidis serogroup B strains by using a pair of primers, 5UNI2086 and 3UNI2086
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Cloning, sequence analysis, and phylogenetic analysis of 2086 genes. The amplified PCR products were cloned into the pCR2.1-TOPO vector (Invitrogen Co., Carlsbad, Calif.). DNA sequencing was carried out using BigDye terminator chemistry with the specifically designed primers on an Applied Biosystems 377 automated DNA sequencer (Applied Biosystems). Sequencher 4.0.5 software (Gene Codes Corp., Ann Arbor, Mich.) was used to analyze the DNA sequences. The DNA sequences of the 2086 genes were translated into amino acid sequences using the LASERGENE software (DNAStar, Inc., Madison, Wis.). Each deduced amino acid sequence was aligned using ClustalW (16) within the DNAStar MegAlign suite of tools. The phylogenetic trees were constructed using neighbor joining (35), the unweighted pair group method with arithmetic means analysis (38), and ClustalW within DNAStar MegAlign.
Retrieved sequences. Homologs of the 2086 gene were identified within the available sequenced neisserial genomes and are listed with strain name, ORF designation, and database accession numbers as follows: strain Z2491, ORF NMA0586, accession no. AL162753; strain MC58, ORF NMB1870, no. AE002537; FA1090, University of Oklahoma unpublished designation [http://dna1.chem.ou.edu/gono.html].
Amplification, cloning, and expression of nonlipidated protein 2086 (rP2086) in E. coli. The 2086 gene from strain 8529 was PCR amplified as described above using AmpliTaq (Applied Biosystems) and primers N2086ILE and 20863STP (Table 2). For strain CDC-1573, primers N1573PCR and 20863STP were used. For strain 2996, primers N2086ILE and 29963STP were used. Features of these primers include a synthetic BglII restriction site in each and a synthetic NdeI restriction site in N2086ILE and N1573PCR. Termination codons in all three reading frames are present in 20863STP and 29963STP. Primers N2086ILE and N1573PCR amplify the 2086 gene with an ATG (Met) fused to the second amino-terminal codon (ACG), representing a single amino acid substitution (replaces TGC Cys) of the mature 2086 polypeptide. BglII-cleaved 2086 amplified gene fragments were cloned into the BamHI site of vector pET9a (Novagen, Madison, Wis.). This configuration results in a T7-tag fusion to the amino terminus of rP2086. Deletion of the NdeI fragment removes the T7-tag DNA sequences and links the 2086 gene directly to the ATG start codon provided by the pET9a vector. rP2086 lacking the T7 fusion was expressed in E. coli strain BLR(DE3)pLysS (Novagen) grown in HySoy broth (Sheffield Products, Norwich, N.Y.) supplemented with 1% sterile glucose and 50 µg of kanamycin (Sigma, St. Louis, Mo.)/ml. The cell lines containing the rP2086 genes were grown to mid-log phase and induced to express the recombinant proteins by adding isopropyl ß-D-thiogalactopyranoside (IPTG) to a 1 mM concentration and grown for an additional 3 h.
Amplification, cloning, and expression of rLP2086 in E. coli. The 2086 gene from each of nine different N. meningitidis strains was cloned behind the P4 lipoprotein signal sequence of nontypeable Haemophilus influenzae (13). Amplification reactions were performed as described above using ReddyMix PCR Master mix (ABgene House). Four subfamily B 2086 genes were amplified from the genomes of 8529, M982, 880049, and CDC-1573 strains. Oligonucleotides used for the amplification (Table 2) were as follows: for strains 8529, M982, and 880049, 5LIP2086 and 3SPH2086 were used; for strain CDC-1573, 5LIP1573 and 3SPH2086 were used. Five subfamily A 2086 genes were amplified from the genomes of 2996, M97 252988, C11, 870446, and M98 250771 strains. Oligonucleotides used for the amplification of 2086 genes from strains 2996, M97 252988, C11, and 870446 were 5LIP2996 and N2996SPH; for strain M98 250771 the oligonucleotides were 5LIP771 and N2996SPH. The restriction site BamHI was incorporated into the 5' end of each NH2-terminal primer and resulted in the insertion of a glycine residue in the mature protein at amino acid position +2. The reverse primers were designed to be homologous to the COOH-terminal end of the 2086 gene and included the stop codon as well as an SphI site for cloning purposes. Each amplified fragment was cloned into a pBAD18-Cm vector (14) modified to contain the P4 leader sequence (M2pLP339) using the BamHI and SphI restriction sites (all restriction enzymes were supplied by New England Biolabs, Inc., Beverly, Mass.).
rLP2086 was expressed in E. coli strain BLR (Novagen) grown in HySoy broth supplemented with 1% sterile glucose and 30 µg of chloramphenicol (Sigma)/ml. The cell lines containing the rLP2086 genes were grown to mid-log phase and induced to express the recombinant proteins by adding arabinose (Sigma) to a 0.2% concentration and grown for an additional 3 h.
rPorA expression. The mature PorA gene sequences from meningococcal strains 6557 and NMB were PCR amplified using primers PorABgl2Fwd and PorABlg2Ter. The BglII and NdeI sites are shown in Table 2. Amplified products were cloned directly into the pCR2.1-TOPO vector (Invitrogen). A BglII fragment containing the porA gene was cleaved by restriction endonuclease digestion and cloned into the BamHI site of the pET9a (Novagen) vector. Deletion of the NdeI fragment was performed as described above. The recombinant plasmids were introduced into the E. coli expression strain BLR(DE3)pLysS (Novagen) by transformation. The T7 expression system was then used to overexpress the mature form of rPorA. The BLR(DE3)/pET9a strains were grown overnight at 37°C in HySoy broth supplemented with 30 µg of kanamycin/ml and 2% glucose. Overnight cultures were diluted 20-fold in HySoy broth with 30 µg of kanamycin/ml and 1% glycerol and grown at 37°C for 1 h. These cultures were induced by the addition of IPTG to a final concentration of 1 mM, grown for an additional 2 to 3 h, and then harvested.
Gene 2086 knockout mutants. The 2086 gene of N. meningitidis serogroup B strain 8529 together with 500 bp of its flanking sequences was PCR amplified. The PCR product was cloned into the pBAD TOPO vector (Invitrogen) and then cleaved at the unique PstI restriction site located at the predicted signal sequence cleavage site of the 2086 gene. A kanamycin resistance expression cassette was inserted into the PstI site, and the resulting plasmid was used to insertionally inactivate the chromosomal 2086 gene of naturally competent meningococcal strains 880049, CDC-1573, and NMB. Each mixture was spread on a GC agar plate (Difco Laboratories, Detroit, Mich.) containing 50 µg of kanamycin/ml and incubated at 36°C in 5%CO2 overnight. Potential knockout strains were identified by failure to detect LP2086 expression using subfamily-specific polyclonal antibody in Western blot analysis of whole-cell lysates and by fluorescence-activated cell sorter (FACS) analysis.
Purification of rLP2086 and rP2086 variants.
Frozen pellets of E. coli BLR cells expressing rLP2086 or rP2086 variants were generally suspended in 10 mM HEPES-NaOH (pH 7.4), 1 mM Na2EDTA containing 1 µg of Pefabloc SC (Roche Diagnostics)/ml and lysed by passage through a 110Y microfluidizer (Microfluidics Corp.) equipped with a ceramic disruption chamber at 18,000 lb/in2. The cell lysate was centrifuged at 150,000 to 300,000 x g for 1 h. The pellet was washed and centrifuged twice with the same buffer and frozen overnight. The membrane pellet was extracted with 10 mM HEPES-NaOH (pH 7.4), 1 to 5 mM MgCl2, and 1% Triton X-100 or 1% reduced Triton X-100 for 30 min, followed by centrifugation at 150,000 x g for 30 min. This was repeated three times. All but one of the rLP2086 variants were solubilized with the Triton detergents. Only rLP2086-8529 required further extraction with Zwittergent 3-12 and 3-14 detergents (Calbiochem) prior to solubilization with 1% N-lauroylsarcosine (sodium salt; Sigma) in 50 mM Tris-HCl (pH 8), 5 mM Na2EDTA. The rLP2086 variants were purified using a combination of anion exchange (either Poros HQ [Applied Biosystems] or Fractogel EMD TMAE [Merck]) and either cation exchange (S Fractogel) and/or size exclusion chromatography (S-12; Amersham Biosciences). The combination of anion exchange with either cation exchange and/or size exclusion chromatography was individualized for each variant. The outcomes of these processes were very reproducible. The solubilized rLP2086 was adjusted to 1% Zwittergent 3-12 prior to adsorption on the anion exchange column and then eluted with a gradient of NaCl. Cation exchange chromatography was performed generally in 30 mM sodium phosphate buffer containing 1% Zwittergent 3-12, eluting with a pH gradient between 6 and 8. Minor pH variations were necessary to ensure binding to the anion and/or cation exchange columns and were related to the pI of each variant. Size exclusion chromatography utilized HEPES-NaOH or sodium phosphate buffers at pH 7.4 containing 150 mM NaCl and 1% Zwittergent 3-12. Nonlipidated rP2086 variants were located in the cytoplasmic fractions and purified essentially as the lipidated variants, except that the buffers did not contain detergents. Purity was accessed by laser densitometry following sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Coomassie blue staining. Seven of the nine rLP2086 variants and two of the three rP2086 variants achieved protein purity of
90% by these processes.
Purification of rPorA. The rPorA was solubilized from E. coli inclusion bodies with 50 mM Tris-HCl (pH 8.0), 5 mM Na2EDTA containing 8 M urea. The denatured inclusion body solution was adjusted to 1% Zwittergent 3-14, 250 mM NaCl and refolded by dialysis against 50 mM Tris-HCl (pH 8.0), 5 mM Na2EDTA, 250 mM NaCl, 1% Zwittergent 3-14, without urea. The refolded rPorA was concentrated by tangential flow filtration using a Pellicon XL 50-cm2 filter with 10K MWCO (Millipore, Billerica, Mass.), and the buffer was exchanged to 20 mM sodium phosphate (pH 6.0), 5 mM EDTA, 50 mM NaCl, 0.1% Zwittergent 3-14 using Sephadex G-25 (Amersham Biosciences) gel filtration. The rPorA was further purified by cation exchange chromatography in S Fractogel equilibrated in buffer F using 1 M NaCl for elution.
Mass spectral analysis by MALDI-TOF.
Mass spectrometry of rP2086 and rLP2086 was carried out on a Perseptive Biosystems Voyager DE-sSTR matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometer as described by the manufacturer. Sinapinic acid or
-cyano-4-hydroxycinnamic acid were used as matrices.
Mouse immunization. Formulations with purified rP2086, rLP2086, and rPorA proteins contained 10 µg of each protein and 20 µg of QS-21(Antigenics, Inc., Framingham, Mass.). For all immunizations, a 0.2-ml dose was administered by subcutaneous (rump) injection to 6- to 8-week-old female Swiss-Webster mice at weeks 0 and 4. Blood was collected at weeks 0, 4, and 6.
SDS-PAGE. Proteins were separated by SDS-PAGE using a 10-to-20% precast gel (Zaxis or PAGEr Gold; Cambrex Bioscience Inc., Rockland, Maine) and the Laemmli system (19). Proteins were then stained with Coomassie brilliant blue.
Whole-cell ELISA. Enzyme-linked immunosorbent assays (ELISAs) were performed as described previously (1), using an alkaline phosphatase detection system. Endpoint titers were determined as the dilution of the antiserum that resulted in an optical density of 0.1.
Bactericidal assays.
Bactericidal assays were performed as previously described (28) with human serum from individual donors as the complement source. Complement-mediated antibody-dependent bactericidal titers for the serum bactericidal assay (BC) were expressed as the reciprocal of the highest dilution of test serum that killed
50% of the target cells introduced into the assay mixtures (BC50 titer).
Western blot reactivity of meningococcal cell lysates with polyclonal rLP2086 antiserum. Frozen aliquots of meningococcal strains were streaked out on GC agar plates containing 1% Kellogg's supplement and incubated at 36°C in 5% CO2 overnight. Cells were scraped from plates and transferred to 500 ml of phosphate-buffered saline (PBS). The cell suspension was then heat killed by incubation in a 65°C water bath for 45 min. Total protein was determined using the bicinchoninic acid assay (Pierce Biotechnology, Inc., Rockford, Ill.). Gradient SDS-PAGE (10 to 20%; PAGEr Gold) was performed with 30 to 40 µg of total protein of each cell lysate as described above. Western blot analysis was performed according to standard procedures (19), using either antisera pooled by subfamily or antisera homologous to the LP2086 of the neisserial strain being tested. The LP2086 subfamily A antiserum pool contained a mixture of anti-rLP2086-250771 (1/500 dilution), anti-rLP2086-870446 (1/1,000 dilution), and anti-rLP2086-2996 (1/1,000 dilution) polyclonal antibodies, while the LP2086 subfamily B antiserum pool contained a mixture of anti-rLP2086-880049 (1/500 dilution), anti-rLP2086-M982 (1/500 dilution), anti-rLP2086-8529 (1/1,000 dilution), and anti-rLP2086-1573 (1/500 dilution) polyclonal antibodies. Antibody binding was detected using a secondary antibody, alkaline phosphate-labeled goat anti-mouse (Biosource International, Camarillo, Calif.). Western blots were developed using the BCIP/NBT substrate system (Kirkegaard & Perry Laboratories, Gaithersburg, Md.).
FACS analysis.
Meningococcal strains were grown overnight in 5% CO2 at 37°C on GC agar plates containing 1% Kellogg's supplement (18). The cells were scraped from plates and resuspended in 1 ml of 1x Dulbecco's PBS without Mg2+ and Ca2+, 0.5% bovine serum albumin (BSA), and 0.1% fish gelatin (FLUKA, Milwaukee, Wis.) (PBS-BSA-FG) at a dilution of
108 cells/ml. Anti-rLP2086 antiserum was added to 99 µl of cells in a 1/100 dilution and incubated on ice for 1 h. The cells were washed twice with 1 ml of PBS-BSA-FG and resuspended in 99 µl of PBS-BSA-FG. Secondary antibody conjugated to Alexa Fluor 488 (Molecular Probes, Eugene, Oreg.) was added at 1/100 dilution and incubated on ice for 30 min. The cells were washed twice as above and resuspended in 100 µl of PBS with 0.4% formaldehyde for 30 min at room temperature or overnight at 4°C. Fixed cells were washed in 1 ml of PBS-BSA-FG. The cells in 1 ml of PBS-BSA-FG were analyzed on a Becton Dickinson FACS Vantage SE apparatus.
Immunoelectron microscopy. N. meningitidis serogroup B strain H44/76 cells were fixed for 60 min at room temperature in 4% paraformaldehyde plus 0.05% glutaraldehyde in PBS, pH 7.2. Whole-cell, negative-stain, immunogold labeling was performed using a modified procedure developed by Slot and Geuze (37). Following fixation, droplets of cells were placed on Parafilm. Formvar carbon-coated gold grids were placed face down on each droplet. Excess fluid was wicked off, and blocking was accomplished in two stages using PBS containing 1% BSA (PBS-BSA) for 5 min and, later, PBS containing 1% cold water fish gelatin (FLUKA) for 10 min. Excess aldehyde was quenched using 0.02 M glycine in PBS for 5 min. Grids with cells were inverted over rLP2086 antibody derived from strain 8529 and diluted 1:50 in PBS-BSA for 1 h in a humidified chamber. Grids were rinsed five times for 1 min in PBS-BSA. Antigen was detected by incubation for 60 min with goat anti-mouse immunoglobulin G plus immunoglobulin M conjugated to 12-nm colloidal gold beads diluted 1:5 in PBS-BSA (Jackson ImmunoResearch Labs, West Grove, Pa.). Rinsing took place in PBS (four times for 1 min). Grids with cells were stabilized with 1% glutaraldehyde in PBS (3 min). Each sample was rinsed in distilled water (five times for 1 min). Grids were negatively stained (30 s) using a vanadium-based stain (Nanoprobes, Inc., Stony Brook, N.Y.). Control samples were incubated either with preimmune sera (week 0) or in the absence of primary antibody. All studies used a Zeiss 10C transmission electron microscope operating at 100 kV. Photographic prints were processed from the electron micrographs.
Nucleotide sequence accession number. The nucleotide sequences of the mature 2086 coding region from 63 neisserial isolates and a partial nucleotide sequence for the 2086 gene from N. lactamica were deposited in the GenBank database. Their accession numbers (isolate identification) are as follows: AY330352 (L3 6275), AY330353 (CDC-2369), AY330354 (CDC-1034), AY330355 (L4 891), AY330356 (B16B6), AY330357 (W135), AY330358 (C11), AY330359 (Y), AY330360 (M98 250732), AY330361 (M98 250771), AY330362 (CDC-1135), AY330363 (M97 252153), AY330364 (CDC-1610), AY330365 (CDC-1492), AY330366 (L8 M978), AY330367 (M97 252988), AY330368 (M97 252697), AY330369 (6557), AY330370 (2996), AY330371 (M97 252976), AY330372 (M97 251854), AY330373 (CDC-1521), AY330374 (M98 250622), AY330375 (870446), AY330376 (M97 253248), AY330377 (M98 250809), AY330378 (L5 M981), AY330379 (NMB), AY330380 (M98 250572), AY330381 (A4), AY330382 (M97 251836), AY330383 (M97 251957), AY330384 (M97 251985), AY330385 (M97 252060), AY330386 (M97 251870), AY330387 (M97 251994), AY330388 (M98 250024), AY330389 (M97 251905), AY330390 (M97 251876), AY330391 (M97 251898), AY330392 (M97 251830), AY330393 (CDC-937), AY330394 (M97 252097), AY330395 (870227), AY330396 (H355), AY330397 (H44/76), AY330398 (8529), AY330399 (6940), AY330400 (M982), AY330401 (880049), AY330402 (M97 253524), AY330403 (M97 251885), AY330404 (M97 251926), AY330405 (M98 250670), AY330406 (CDC-1573), AY330407 (CDC-852), AY330408 (CDC-983), AY330409 (CDC-1343), AY330410 (CDC-2367), AY330411 (M97 250571), AY330412 (B40), AY330413 (CDC-5315), AY330414 (M98 250716), AY330415 (UR5).
| RESULTS |
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75% identity at the amino acid level to the 2086 gene sequences we had previously identified. Interestingly, strain 6557 was one of the
30% of strains that had initially tested negative by PCR screening using the original internal primer set. Internal primers specific to the COOH-terminal variable regions within strain 6557 were therefore designed. All available neisserial strains (n = 95) were screened by PCR with the newly identified internal 2086 primers. Only the
30% of N. meningitidis strains that had previously tested negative by PCR for 2086 were positive in this screen. These variants comprise a second family of 2086 genes and are designated as subfamily A. The 2086 genes identified in the initial PCR screen, representing
70% of strains tested, are designated as subfamily B. Two sets of internal primers based on the COOH-terminal variable regions of the 2086 genes were utilized to discriminate between subfamily A and B gene sequences (data not shown). With the exception of N. sicca, all neisserial isolates tested by this PCR screening method yielded a single amplified product of the expected size. Additionally, whole-cell lysates of the 95 neisserial isolates were each tested for polyclonal antibody reactivity by Western blot analysis to detect the presence of a 2086 protein (Table 1) using LP2086 subfamily-specific pooled antisera. All neisserial isolates expressed an immunoreactive 2086 protein, except for N. sicca.
Amplification and sequencing of 2086 genes.
The coding regions of 2086 genes from 63 neisserial isolates were amplified by PCR and cloned, and their sequences were determined. Computer analysis of the deduced 2086 amino acid sequences using DNAStar MegAlign divided the proteins into two subfamilies. Analysis of the 63 deduced LP2086 amino acid sequences indicated clusters of identity within the subfamily branches. The LP2086 amino acid sequences within each cluster were
99.6% identical to each other. Based on amino acid sequence identity and clustering of the 2086 proteins, 21 unique sequences were identified (Fig. 1). The greatest degree of sequence conservation was seen within subfamilies. Amino acid sequences within subfamily A were 84.3 to 99.2% identical. Amino acid identity was 87.1 to 99.2% within subfamily B. The amino acid sequence diversity was greatest between the two subfamilies, ranging from 59.2 to 74.4% identity. The group, type, and subtype of each neisserial isolate in the phylogenetic tree are indicated along with the cluster identification and the number of isolates within each cluster. As shown in Table 1 and Fig. 1, cluster A4 contained one isolate each of N. meningitidis serogroups B, C11, Y, and W135. One N. meningitidis serogroup A isolate was located in cluster B5. The 2086 homolog from the N. meningitidis serogroup A strain Z2491 is also contained within this cluster. GNA1870 from N. meningitidis serogroup B strain MC58 would be contained within cluster B4. The subfamily A branch of the phylogenetic tree contains a gonococcal 2086 protein sequence (FA1090-GC) in cluster A10. The presence of this gonococcal sequence within the tree may indicate genetic exchange within this family of neisserial genes. Interestingly, the FA1090-GC gene from N. gonorrhoeae did not contain a lipoprotein signal sequence.
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154 amino acids, with 48 to 57% identity. Although there is significant variability between LP2086 subfamilies, within a subfamily the proteins are highly conserved, >86%, among different strains. To further characterize the diversity among the 21 unique 2086 genes from the various neisserial species, a sequence distances matrix was generated from the amino acid alignment (data not shown). The amino acid sequence homology between the 21 unique proteins ranged from 99.2 to 59.2% identity. Interestingly, 3 of the 21 unique proteins (M98 250771, CDC-1135, and CDC-1573) contained a four- to five-glycine-rich amino acid insertion near the NH2-terminal end (Fig. 2). Two of these proteins, LP2086-CDC1135 and LP2086-M98250771, and two additional proteins in the A subfamily contained a three-amino-acid insert, K-D-N, approximately 67 amino acids from the N-terminal of the mature protein. This insertion was only seen in a subset of the A subfamily.
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The presence of a lipoprotein signal sequence motif [-Leu-(Ala/Val)-4-Leu-3-Ala-(Ser)-2-Gly(Ala)-1-Cys+1-(sub-scripts denote residue numbers on the mature protein) (39)] and the use of the P4 lipid signal sequence in our recombinant plasmid constructs led to the production of lipoproteins. NH2-terminal amino acid sequencing of purified native LP2086 and rLP2086 indicated that the NH2-terminal amino acid residue was blocked.
Purified rLP2086-8529 and -2996 proteins migrated at
32 kDa as analyzed by SDS-PAGE, which was slightly larger than their theoretical molecular masses (Fig. 3). To more accurately define the molecular weight, the mass of several rLP2086 proteins was determined by MALDI-TOF mass spectral analysis. The theoretical molecular weights without the N-terminal lipidation of P2086-8529 and P2086-2996 are 26,963, and 27,128, respectively. The mass of each rLP2086 differed from the theoretical weight of rP2086 by 679 to 823, which is within the range of the mass of the NH2-terminal lipid modification common to bacterial lipoproteins.
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| DISCUSSION |
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50% of invasive meningococcal disease in developed countries (2), most approaches to date have been directed towards epidemic control. Many of the vaccine candidates currently under investigation are only efficacious against isolates representing a small number of serosubtypes. Recent reports on serogroup B meningococcal vaccine candidates in clinical trials have focused on complex mixtures or OMP preparations containing many different proteins (6, 36, 40). The complex nature of these vaccines makes obtaining correlates of protection challenging, because it is difficult to determine which antigen(s) is responsible for the protective immune response. While complexity would not necessarily prevent an efficacious vaccine from being used, it would be preferable to utilize identifiable antigens capable of inducing complement-mediated bactericidal antibodies against strains representing a variety of serosubtypes.
To better understand the immunogenicity of LP2086, the amino acid sequences of 63 neisserial isolates were analyzed. Phylogenetic analysis of the deduced 2086 protein sequences led to the identification of two distinct subfamilies, represented by 21 unique amino acid sequences. Approximately 70% of the neisserial isolates in our collection contained a subfamily B 2086 gene. To gain further insight into the epidemiological distribution of 2086 subfamily isolates, additional PCR screening studies are planned. Although the 21 unique LP2086 sequences vary in amino acid homology (59 to 99.2% identity) within a subfamily, the C-terminal
154 amino acids share considerable homology and appear to be responsible for the subfamily grouping. The conserved N-terminal region (
100 amino acids) appears to define family membership and in at least one strain (870446) appears to be exposed at the bacterial surface. Amino acid alignments of full-length 2086 proteins indicated the presence of at least four different native 2086 lipoprotein signal sequences. To minimize potential recombinant protein expression problems in E. coli due to message instability and/or incompatibility, the nontypeable H. influenzae P4 lipoprotein signal sequence (13) was used to express each gene of interest. In the pBAD vector system, the P4 signal sequence improved the expression of rLP2086 compared with genes expressed using a native 2086 lipoprotein signal sequence, starting with the methionine at position -25 (data not shown).
Our data suggest that the level of LP2086 expression and/or surface exposure may vary among the different neisserial isolates. We have observed 10- to 200-fold differences in the level of LP2086 surface reactivity between isolates as detected by whole-cell ELISA (Table 3). Additionally, there were significant differences in surface reactivities between isolates as seen by FACS analyses (Fig. 5). Isolates considered negative by FACS and with low whole-cell ELISA titers were shown to express LP2086 when their whole-cell lysates were tested for Western blot reactivity with the appropriate pooled antisera (data not shown). The presence, absence, or variation of other surface components (e.g., OMPs, LOS, etc.) may alter the accessibility of LP2086 epitopes (3, 25). Alternatively, there may be differences in the transport of LP2086 variants to the bacterial cell surface. Additional experiments to gain a better understanding of the differences between levels of LP2086 expression and/or surface reactivity, utilizing monoclonal antibodies, are planned for the future.
Our results suggest that purified rLP2086 may significantly reduce the number of proteins required to provide adequate vaccine coverage of the serosubtypes responsible for group B meningococcal disease. While the epidemiological relationships between serosubtypes of PorAs and the 2086 subfamilies will need further study, the sequence variation within a 2086 subfamily has less impact on the ability of antisera to support bactericidal activity than is seen with PorAs. Nine of the 21 unique LP2086 variants were selected for further study based on their sequence diversity and potential to complement a PorA vaccine preparation. Antisera prepared to these nine proteins supported bactericidal activity against strains within each of the two 2086 subfamilies. Antisera to three nonlipidated rP2086 variants also supported bactericidal activity, although the lipidated versions consistently elicited a greater immune response. These results are consistent with the propensity of lipidation to increase or modify the immunological response to proteins (5, 20).
Bactericidal activity was detected against representatives of strains known to cause group B meningococcal disease throughout western Europe, the Americas, Australia, and New Zealand. One variant from each subfamily of rLP2086 could be enough to elicit immunity against most strains of meningococcus.
The family of rLP2086 antigens are candidates for clinical vaccine testing either alone or in combination with other antigens, such as rPorA. A vaccine that includes multiple antigens could reduce the possibility of pathogenic neisserial escape mutants. The addition of rLP2086 proteins to individual conjugate vaccines for serogroups A, C, Y, and W135 might also be beneficial and provide protection against capsule switching.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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