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Infection and Immunity, June 2004, p. 3267-3275, Vol. 72, No. 6
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.6.3267-3275.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Microbiology, Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro, Tokushima 770-8514, Japan
Received 20 September 2003/ Returned for modification 29 November 2003/ Accepted 7 January 2004
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-actin and nonmuscle ß/
-actin (3), and Ib binds to the cell, forming oligomers to create ion-permeable channels (15, 24, 32). Each component lacks toxic activity when it is injected alone, but together they act in binary combinations to produce cytotoxic, lethal, and dermonecrotic activities (28). Sequencing of the genes encoding Ia and Ib has revealed that Ia belongs to a family of bacterial ADP-ribosylating toxins, along with the enzyme components of Clostridium botulinum C2 toxin, C. spiroforme iota-like toxin, Bacillus cereus vegetative insecticidal protein, cholera toxin, and Escherichia coli heat-labile enterotoxin (8). Crystallography of Ia complexed with NADH and site-directed mutagenesis of Ia revealed that it can be divided into two domains, an N domain (1 to 210 residues) and a C domain (211 to 413 residues) which has a cavity that binds NADH, and that Ia cleaves the N-glycoside bond of NAD+ and transfers the ADP-ribose moiety to Arg-177 of actin in the cavity (29, 33). The amino acid sequence of Ib is similar to that of the protective antigen (PA) of Bacillus anthracis (26). It has been reported that iota-toxin and C2 toxin enter cells by receptor-mediated endocytosis (4). Furthermore, K. Aktories' group has reported that C2II oligomers bind to a carbohydrate receptor, assemble C2I, enter cells by endocytosis, and release C2I into the cytosol after acidification of the endosomal compartment (4, 10). B. Stiles and M. Popoff's group has reported that Ib strongly binds to the cell surface receptors of Vero and MDCK cells and that the C-terminal domain of Ib is responsible for binding to the cell surface receptor and the N-terminal domain is important for Ia docking (17, 18, 31). Furthermore, Blocker et al. reported that acidification of the endosomal compartments is required for the uptake of iota-toxin (5). Crystallography showed that PA is characterized by a four-domain structure (27). Milne et al. (19) reported that PA inserted into membranes forms oligomers to create ion-conductive channels and that PA associates with other factors and enters cells with other factors via endocytosis. Abrami et al. (2) reported that PA induces endocytosis of its receptor via a lipid raft-mediated clathrin-dependent process. Several studies have provided evidence for the specificity of binding of Ib to eukaryotic cells (5, 17, 18, 31). We reported that Ib binds to Vero cells, forming oligomers itself to create ion-permeable channels, and that oligomer-mediated endocytosis allows Ia to internalize in the cells (24). However, little is known about the binding and internalization of Ib and the role of Ib in the entry of Ia into cells. Here we present evidence for the binding of Ib to lipid rafts of MDCK cells and the internalization of Ib with Ia into cells.
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-phosphatidylcholine (DOPC), carboxyfluorescein (CF), and a protease inhibitor mixture were obtained from Sigma (St. Louis, Mo.). Mouse anti-caveolin-1 and -Lyn antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, Calif.). A Cy3 reactive dye pack, horseradish peroxidase-labeled sheep anti-mouse immunoglobulin G, and an ECL Western blotting kit were purchased from Amersham Pharmacia Biotech (Tokyo, Japan). Dulbecco's modified Eagle medium (DMEM) was purchased from GIBCO BRL (New York, N.Y.). The pEGFP vector was purchased from BD Bioscience Clontech (Palo Alto, Calif.). All other chemicals were of the highest grade available from commercial sources. Expression and purification of Ia and Ib. Recombinant Ia was purified from culture supernatants of Bacillus subtilis ISW1214 carrying a plasmid containing the Ia gene, as described previously (23). Recombinant plasmids of pHY300PLK harboring the structural genes of the wild-type Ia gene were introduced into B. subtilis ISW1214 by transformation. Transformants were grown in Luria-Bertani broth at 37°C for 8 h with continuous aeration. The culture was centrifuged (18,000 x g for 20 min), and ammonium sulfate (313 g/liter) was added to the culture supernatant fluid. The ammonium sulfate fraction was dialyzed against 0.02 M Tris-HCl buffer (pH 7.5) and loaded onto a DEAE-Sepharose CL-6B column that was previously equilibrated with the same buffer. Elution of the column was done with a 0 to 0.1 M NaCl linear gradient (300-ml total volume) in 0.02 M Tris-HCl buffer (pH 7.5). Ia eluted as a sharp peak at a NaCl concentration of about 0.03 M (23). Ib was expressed as a fusion protein with glutathione S-transferase (GST) in E. coli BL21, as described previously (24). After the growth (at 30°C) and induction (with isopropyl-ß-D-thiogalactopyranoside to 1 mM) of a large culture, the cells were centrifuged and disrupted by a sonicator on ice in a short burst. Centrifugation of the lysate and passaging of the soluble fraction through a glutathione-Sepharose (Amersham Pharmacia Biotech) column yielded the GST-Ib fusion protein at about 2 mg/liter. After the cleavage of purified GST-Ib with chymotrypsin, as described previously (24), the cleaved protein was passed through a glutathione-Sepharose column and then subjected to anion-exchange chromatography (Mono-Q HR10/10; Amersham Pharmacia Biotech). The protein was eluted with a 0 to 1.0 M NaCl linear gradient, and Ib eluted as a peak at a NaCl concentration of about 0.5 M. Fractions containing Ib were collected (24).
Construction of domain 4 of Ib. To prepare domain 4 of Ib, we constructed Ib421-664, with a deletion of the N-terminal 420 amino acids of Ib (residues 1 to 420) (Fig. 1), by a PCR using the DNA template pTIB, containing the entire Ib gene (24), a forward primer (5'-GGAGATCTAGTAATATTGATACTAA-3') encoding a BglII site (in bold), DNA encoding amino acids 421 to 425 of Ib, and a reverse primer (5'-CCCTCGAGCTAGCTTTATTAATTTT-3') encoding a downstream XhoI restriction site (in bold). PCR products were digested with BglII and XhoI and ligated into BamHI- and XhoI-digested pGEX-4T-1 (Amersham Pharmacia Biotech) so that the correct reading frame was maintained with the thrombin cleavage site under the GST gene (pGEX-Ib421-664). The expression and purification of Ib421-644 were performed as described above for Ib.
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FIG. 1. Schematic representation of deleted Ia and Ib proteins and IaN-GFP fusion protein.
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Construction and purification of Ia deletion mutants. Ia deletion mutants (Ia1-210, Ia21-210, Ia101-210, Ia151-210, and Ia211-413) (Fig. 1) were amplified from pT-IA by the use of specific primers. The oligonucleotide primers introduced BglII and SalI sites at the intended new 5' and 3' ends, respectively. Amplified fragments were ligated into BamHI- and SalI-digested pGEX-4T-1. The expression and purification of Ia deletion mutants were performed as described above for Ib.
Assay of cytotoxicity. MDCK cells were obtained from the Riken Cell Bank (Tsukuba, Japan). They were cultured in DMEM supplemented with 10% fetal calf serum (FCS), 100 U of penicillin/ml, 100 µg of streptomycin/ml, and 2 mM glutamine (FCS-DMEM). All incubation steps were performed at 37°C in a 5% CO2 atmosphere.
The test for cytotoxicity was done with MDCK cells. The cells were cultivated in FCS-DMEM. For cytotoxicity assays, the cells were inoculated in 48-well tissue culture plates (Falcon, Oxnard, Calif.). Various concentrations of Ia and 500 ng of Ib/ml were mixed in FCS-DMEM and inoculated onto cell monolayers. The cells were observed for morphological alterations 8 h after inoculation, as described previously (23). For a measurement of the effect of MßCD on the cytotoxicity of iota-toxin, MDCK cells were preincubated with this agent at 37°C for 1 h and then incubated with Ia and Ib at 37°C for 8 h. Cholesterol levels were assayed spectrophotometrically by the use of a diagnostic kit (Cholesterol C-Test; Wako Pure Chemicals, Osaka, Japan).
Internalization of Cy3-labeled Ib and IaN-GFP. Ib was labeled with Cy3 by using a reactive dye pack according to the manufacturer's instructions (Amersham Pharmacia Biotech). MDCK cells on poly-L-lysine-coated glass coverslips were incubated with Cy3-labeled Ib (1 µg/ml) in FCS-DMEM at 37°C for various times. For investigations of the internalization of IaN-GFP, the cells were incubated with IaN-GFP (1 µg/ml) in the presence or absence of Ib (500 ng/ml) at 37°C for 60 min. They were then washed three times with ice-cold phosphate-buffered saline and fixed with 3% paraformaldehyde in phosphate-buffered saline for 20 min before being examined under a Nikon TE300 fluorescence and phase microscope (Nikon Co., Tokyo, Japan). Images were captured and digitized with a charge-coupled device camera (Hamamatsu Photonics Co., Hamamatsu, Japan) and then were edited with Adobe Photoshop 5.0 (Adobe Systems Inc., Mountain View, Calif.).
Iodination of toxin components. 125I-labeled Ia, Ib, and Ib421-644 were prepared with Bolton-Hunter reagent (2,000 Ci/mmol; Amersham Pharmacia Biotech) as described previously (24). Ia, Ib, and Ib421-644 (50 µg) were incubated with 250 µCi of 125I-labeled Bolton-Hunter reagent. Labeled Ib plus labeled Ia retained over 90% of the original cytotoxicity of cold Ia plus cold Ib. The binding of 125I-Ib and 125I-Ib421-644 to MDCK cells was dose-dependently inhibited by cold Ib421-644 and cold Ib, respectively (data not shown), indicating that Ib and Ib421-644 bind to the same receptor on the cell surface.
Sucrose gradient fractionation. The separation of lipid rafts was done by flotation-centrifugation on a sucrose gradient (25, 34). MDCK cells were incubated with 125I-labeled Ib, 125I-labeled Ia in the presence or absence of Ib, or 125I-labeled Ib421-664 in fresh medium at 37°C for various times. The cells were rinsed with Hanks balanced salt solution (HBSS) and then lysed by exposure to 1% Triton X-100 for 30 min at 4°C in HBSS containing a protease inhibitor mixture. The lysates were scraped from the dishes with a cell scraper and homogenized by being passed through a 22-gauge needle. The lysates were adjusted to 40% (wt/vol) sucrose, overlaid with 2.4 ml of 36% sucrose and 1.2 ml of 5% sucrose in HBSS, centrifuged at 45,000 rpm (250,000 x g) for 18 h at 4°C in an SW55 rotor (Beckman Instruments, Inc., Palo Alto, Calif.), and fractionated from the top (0.4 ml/fraction). The aliquots were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and autoradiographed.
Immunoblot analysis of lipid raft marker proteins. Aliquots of the flotation sucrose gradient fractions were heated in 2% SDS sample buffer at 99°C for 3 min. The samples were electrophoresed in an SDS-PAGE gel and then transferred to a polyvinyl difluoride membrane. The membrane was blocked with Tris-buffered saline containing 2% Tween 20 and 5% skim milk and was incubated first with a primary antibody in Tris-buffered saline containing 1% skim milk, next with a horseradish peroxidase-conjugated secondary antibody, and finally with an enhanced chemiluminescence analysis solution.
Liposomes. DOPC-cholesterol (1:1) liposomes containing CF were prepared, and CF release was monitored by a previously described procedure (25). The binding of 125I-Ib to liposomes was performed as described previously (25).
Surface plasmon resonance (SPR) analysis. All experiments were performed with BIAcore 3000 system sensor chips and their software evaluation package (Biacore KK, Tokyo, Japan). The Ib oligomer was purified from trypsin-treated Ib by Mono Q chromatography with the fast-performance liquid chromatography system, as described previously (24). Oligomers purified by this method are in a heptameric state, although the presence of monomers or lower order oligomers has not been excluded. For CM5 chips, the system was maintained with a constant flow (10 µl/min) of HBS buffer (10 mM HEPES, pH 7.4, and 150 mM NaCl) at 25°C. The preconcentration step of this coupling requires the lowering of the pH of the protein to be immobilized to a value below its pKa, which was calculated to be 4.7 for Ib. The highest pH at which this preconcentration step was effective was pH 4.5. Ib oligomers and Ib monomers were covalently bound to the carboxylated dextran matrix by amine coupling according to the manufacturer's directions (Biacore), except that they were diluted in sodium acetate buffer, pH 4.5, to a concentration of 500 nM. These dilutions were injected onto the activated surface at a flow rate of 2 µl/min until the desired baseline level was reached (about 2,000 relative units) and then were blocked with ethanolamine according to the manufacturer's directions. The interaction between immobilized Ib and Ia was examined at 25°C. Ia diluted in HBS was injected over the Ib oligomer surface at 10 µl/min for 170 s, allowing association to take place. Dissociation was then monitored in a constant flow of HBS for at least 150 s. Bound analyte was removed, and the Ib oligomer baseline was regenerated with a 10-µl pulse of 0.2 M glycine-HCl buffer (pH 2.0). The baseline decay was <3% per cycle. The association and dissociation rate constants kon and koff were determined from sensorgram data by using the BiaEvaluation 3.0 software package.
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FIG. 2. Internalization of Cy3-labeled Ib to endosomal compartment of MDCK cells. MDCK cells were incubated with Cy3-labeled Ib (1 µg/ml) for 15 min (A), 60 min (B), and 120 min (C) at 37°C. The cells were fixed, and the localization of Cy3-Ib was detected by fluorescence microscopy.
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FIG. 3. Sucrose density gradient analysis of 125I-Ib-bound MDCK cells. (A) MDCK cells were incubated with 125I-Ib (500 ng/ml) in DMEM containing 10% fetal bovine serum at 37°C (a) or 4°C (b) for 30 min, extracted with HBSS containing 1% Triton X-100 at 4°C for 30 min, and sonicated. The extracts were mixed with 40% sucrose and then loaded at the bottom of a centrifuge tube. After sucrose gradient ultracentrifugation, 0.4-ml gradient fractions were collected from the tops of the tubes. Aliquots of the gradient fractions were dissolved in 2x SDS sample buffer and incubated at 37°C for 10 min. Samples were subjected to SDS-PAGE, followed by autoradiography. (B) The distribution of cholesterol in the sucrose gradient fractions was determined as described in Materials and Methods. The data are the means and standard deviations from four experiments. The aliquots of gradient fractions were separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes. After the transfer, the blots were treated with an anti-Lyn (C) or anti-caveolin-1 (D) antibody. Peroxidase-conjugated secondary antibodies bound to the membrane were detected by enhanced chemiluminescence as described in Materials and Methods.
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FIG. 4. Oligomer formation of 125I-labeled Ib in lipid rafts of MDCK cells. (A) MDCK cells were incubated with 125I-labeled Ib at 37°C for the indicated times. Triton X-100-insoluble cell extracts were subjected to SDS-PAGE, followed by autoradiography, as described in Materials and Methods. (B) The radioactivity of the 125I-Ib oligomer in MDCK cell lipid rafts was determined by using the Fuji BAS2000 system. The data are the means and standard deviations from three experiments.
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TABLE 1. Cell rounding activity of iota-toxin under various conditions
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TABLE 2. Effect of MßCD on cell rounding induced by Ia plus Iba
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FIG. 5. Effect of MßCD on interaction of Ib with MDCK cells. MDCK cells were incubated in the absence (A) or presence (B) of 10 mM MßCD at 37°C for 30 min. 125I-Ib was mixed with the cells and then incubated at 37°C for 60 min. Triton X-100-insoluble cell extracts were separated by sucrose density ultracentrifugation. Gradient fractions were subjected to SDS-PAGE, followed by autoradiography, as described in Materials and Methods.
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FIG. 6. Binding of 125I-labeled Ib421-611 and 125I-Ia to lipid rafts of MDCK cells in the presence of Ib. (A) MDCK cells were incubated with 125I-labeled Ib421-664 (500 ng/ml) at 37°C for 60 min. (B) MDCK cells were incubated with 125I-labeled Ia (500 ng/ml) in the absence (a) or presence (b) of Ib (500 ng/ml) at 37°C for 60 min. Triton X-100-insoluble cell extracts were separated by sucrose density ultracentrifugation and analyzed as described in Materials and Methods. The radioactivity of 125I-Ia binding to MDCK cell rafts was determined at 37°C for various periods by using a Fuji BAS2000 system (c). The data are the means and standard deviations from three experiments.
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FIG. 7. Ib-induced CF release from DOPC-cholesterol liposomes and oligomer formation of Ib. (A) CF-loaded DOPC-cholesterol (1:1) liposomes were incubated with various amounts of Ib at 4°C ( ) and 37°C () for 3 h. CF release was determined as described in Materials and Methods. Data are given as means ± standard errors (n = 5). (B) DOPC-cholesterol (1:1) liposomes were incubated with 125I-Ib at 4°C (lanes 1 to 3) and 37°C (lanes 4 to 6) for 3 h. The membrane-bound toxin was solubilized and subjected to SDS-PAGE, followed by autoradiography. The concentrations of 125I-Ib were as follows: lanes 1 and 4, 5 µg/ml; lanes 2 and 5, 10 µg/ml; lanes 3 and 6, 20 µg/ml.
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From the crystallography of Ia, we concluded that the C domain (residues 211 to 412) of Ia has a cavity in which NAD+ is folded, corresponding to the catalytic domain (33). Marvaud et al. (18) reported that the N domain of Ia plays a role in the binding of Ia to Ib. Therefore, to examine the effect of the N domain (residues 1 to 210) of Ia on the binding of Ia to Ib bound to cells, we incubated the cells with wild-type Ia (10 ng/ml) and Ib (500 ng/ml) in the presence of various Ia deletion mutants (Fig. 1) at 37°C for 8 h. As shown in Table 3, the N domain (1 to 210 residues) and the Ia 21-210 deletion mutant at >1.0 µg/ml completely inhibited cell rounding induced by Ia plus Ib. The Ia 101-210 and Ia 151-210 deletion mutants, used at >5.0 and 10 µg/ml, respectively, blocked the activity. However, the C domain (Ia 211-413) had no effect on the rounding activity. These results suggest that the central region (residues 151 to 210) of Ia is responsible for the interaction with Ib bound to cells. To investigate whether the N domain of Ia is internalized in MDCK cells in the presence of Ib, we incubated cells grown on glass dishes with the IaN-GFP fusion protein in the presence of Ib at 37°C. As shown in Fig. 8, after 120 min of incubation, IaN-GFP was present in cytoplasmic vesicles (Fig. 8B). However, when the cells were incubated with the fusion protein in the absence of Ib, no fluorescence was observed in the cytosol (Fig. 8A).
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TABLE 3. Inhibitory effect of Ia deletion mutants on cytotoxic activity induced by Ia plus Iba
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FIG. 8. Internalization of IaN-GFP to endosomal compartment of MDCK cells in the presence of Ib. MDCK cells were incubated with IaN-GFP (1 µg/ml) in the absence (A) or presence (B) of Ib (1 µg/ml) for 120 min at 37°C. The cells were fixed, and the localization of IaN-GFP was detected by fluorescence microscopy.
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FIG. 9. SPR analysis of binding of Ia to Ib immobilized on a dextran matrix flow cell surface by primary amine coupling. Injections of Ia (at the indicated concentrations) in HBSS were made onto the Ib oligomer surfaces. The binding of Ia was recorded in real time. Injections were done at 10 µl/min for 170 s, followed by HBSS alone. The experiments were repeated three times, and results for a representative experiment are shown.
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Cy3-Ib was detected on the cell surface up until 60 min of incubation at 37°C and was also found in vesicles in the cytosol. However, it was not found on the membrane after 120 min of incubation, indicating that Ib binds to a receptor on MDCK cells and is then internalized via endocytosis.
Only the monomer of Ib was detected in the Triton X-100-soluble and -insoluble fractions of cells incubated with Ib at 4°C, suggesting that the receptor of Ib is distributed around cytoplasmic membranes. Thus, it is unlikely that the receptor is confined to lipid rafts. The oligomer of Ib was detected in lipid rafts after incubation of the washed cells at 37°C, suggesting that the oligomer is formed in lipid rafts. In addition, the C-terminal region of Ib (Ib421-664) blocked the binding of Ib to the cells, as reported by Marvaud et al. (17), and was detected in lipid raft fractions from MDCK cells. It therefore appears that the C-terminal region of Ib binds to a receptor that is distributed over the entire membrane surface of the cell, that a receptor which is linked with Ib gathers in lipid rafts at 37°C, and that Ib forms oligomers in the lipid rafts.
Lipid rafts are postulated to be cholesterol- and glycosphingolipid-enriched microdomains of the cell plasma membrane that are different from the rest of the membrane. The treatment of MDCK cells with MßCD reduced the cholesterol content of lipid raft fractions, the binding of Ib to the cells, and the rounding activity induced by Ia plus Ib. However, cholesterol had no effect on the activity induced by Ia plus Ib, showing that Ib does not directly interact with cholesterol in lipid rafts. It has been speculated that the functional properties of lipid rafts that are relevant to the intracellular trafficking of Ib may be especially susceptible to treatment with MßCD. It has been reported that the disruption or depletion of cell membrane-associated cholesterol causes major changes in the function and/or distribution of raft-associated membrane components (20, 30). It therefore appears that a function of lipid rafts is to gather Ib so that it can form oligomers and enter cells.
In the present study, Ia was detected in the raft fraction with, but not without, Ib oligomers. Furthermore, SPR analysis showed that Ia binds specifically to the Ib oligomer, not the monomer. Milne et al. (19) reported that B. anthracis lethal factor can bind to the PA oligomer, but not the PA monomer. Thus, it appears that Ia binds to the oligomers of Ib in the rafts. It was reported previously that the Ib oligomer itself induces endocytosis (24). The deletion of amino acid residues from the N domain of Ia provided evidence of a binding site for Ib in the N domain of Ia. Furthermore, IaN-GFP was observed in vesicles in the cytosol in the presence of Ib, but not in its absence, showing that residues 151 to 210 of Ia are critical for the recognition of the oligomer. We therefore concluded that Ia bound to Ib oligomers formed in the lipid rafts is internalized in the cells by endocytosis induced by the oligomers.
The pretreatment of MDCK cells with MßCD resulted in a reduction in the cell rounding induced by Ia plus Ib and in the binding of Ib oligomers to lipid raft fractions of the cells, but there was no effect on the binding of Ib oligomers to nonlipid raft fractions, suggesting that the activity induced by Ia plus Ib is dependent on the binding of Ib oligomers to lipid rafts. The levels of Ib monomer bound to lipid raft fractions at 4°C decreased after an additional incubation at 37°C. However, the Ib oligomer was not detected in lipid raft fractions at 4°C but appeared after an additional incubation at 37°C. In addition, Ia specifically bound to the Ib oligomer in vitro, but not the Ib monomer. Members of our laboratory reported that Ib spontaneously self-associates to form oligomers (500-kDa heptamers) and that the incubation of cells with Ib oligomers plus Ia results in no effect on the cells (24). The incubation of liposomes with the toxin at 37°C caused the formation of a complex (500 kDa) of the toxin and the release of CF from the liposomes, showing that the complex is a functional oligomer (heptamer). It therefore appears that the toxin forms a functional heptamer as a pore in the biological membrane. Furthermore, it is likely that no membrane protein was included in the oligomer that was formed on the surface of the cells. These results suggest that Ib monomers bind to receptors in lipid rafts and form functional oligomers in the membrane without any change in Ib, although we cannot rule out the possibility that the Ib monomer may translocate to lipid raft fractions from nonlipid raft fractions.
Several bacterial pore-forming toxins have been reported to utilize lipid rafts to intoxicate cells. Aerolysin and Clostridium septicum alpha-toxin bind to glycosylphosphatidylinositol-anchored proteins in lipid rafts (1, 11), and C. perfringens epsilon-toxin and perfringolysin bind to cholesterol in lipid rafts (20, 34). It has been proposed that lipid rafts serve as concentrating platforms to promote pore formation by toxins that form oligomers. Our findings indicate that the internalization of iota-toxin is mediated through lipid rafts (cholesterol-rich microdomains) at the plasma membrane, suggesting that the lipid rafts contain all of the necessary components for the mediation of toxin endocytosis. The findings that Ib is concentrated in lipid rafts, where it forms oligomers, and that it induces endocytosis have provided useful information on the cytotoxicity induced by bacterial toxins.
We thank C. Matsubara, T. Kojima, M. Nakanishi, A. Tanabe, and M. Harui for their competent technical assistance.
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