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Infection and Immunity, August 2004, p. 4464-4470, Vol. 72, No. 8
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.8.4464-4470.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Lisa A. Ware,1 Arnoldo Barbosa,1 Sheetij Dutta,1 J. Kathleen Moch,2 J. David Haynes,1 Bader B. Fileta,3 Charles E. White,4 and David E. Lanar1*
Department of Immunology,1 Department of Biometrics,4 Walter Reed Army Institute of Research, and Naval Medical Research Center, Silver Spring, Maryland 20910-7500,2 Department of Clinical Investigations, Walter Reed Army Medical Center, Washington, DC 203073
Received 1 October 2003/ Returned for modification 29 November 2003/ Accepted 30 March 2004
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AMA-1 of P. falciparum is a highly conserved 83-kDa transmembrane protein containing cytoplasmic, transmembrane, and ectodomain regions (28). It is synthesized in merozoites, localized in the micronemes until merozoite release, and then rapidly translocated onto the merozoite surface (4, 25, 35). The amino acid sequence of the ectodomain contains 16 cysteine residues that are cross-linked by eight disulfide bonds. The disulfide bond structure suggests that the ectodomain is composed of three distinct subdomains, domain I, domain II, and domain III (D I, D II, and D III) (13). There is evidence that during translocation onto the merozoite surface, AMA-1 is proteolytically cleaved into smaller fragments (8, 16, 17, 25).
Studies of animal malarias have heightened interest in the development of AMA-1 as a vaccine for human malaria. Immunization with purified recombinant AMA-1 is protective against the simian malaria parasites P. knowlesi (6) and P. fragile (2) and the rodent malaria parasites P. chabaudi (1) and P. yoelii (26). However, the protection was parasite strain specific, suggesting that the protective immune responses were directed toward the polymorphic regions of AMA-1 (5). Protective antibody-mediated immune responses induced against AMA-1 have repeatedly been shown to be directed against conformational epitopes that are dependent on disulfide bond stabilized conformations (1, 2, 5-7, 14, 21, 26). While the amino acid divergence observed among different isolates of P. falciparum AMA-1 has been small (
5%), the changes are significant enough, in most cases, to dramatically affect the cross-strain recognition by heterologous protein-induced antibodies (19). The emergence of these differences, at least in D I, has recently been shown to be correlated with symptomatic malaria cases (3).
We recently completed the production and purification of an antimalaria vaccine based on the AMA-1 ectodomain from P. falciparum (3D7) (7). Immunization of rabbits with purified protein induced the production of antibodies that significantly (>80%) inhibited parasites in an in vitro growth and invasion assay (GIA). The same level of inhibition in the GIA was observed with whole antibodies and Fab fragments of the antibodies (8). In addition, monoclonal antibodies (MAb) have been produced against the ectodomain that significantly block invasion of red blood cells by merozoites in the GIA (20). To better understand how antibodies to each of the subdomains of the ectodomain of AMA-1 contribute to the growth-inhibitory effect seen in the GIA, we have expressed subdomain constructs, in single and doublet combinations, in Escherichia coli, purified each of the proteins, and raised rabbit antibodies against them. These antibodies allowed us to closely examine the effect of domain-specific antibodies on the overall inhibition of invasion measured in the GIA.
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FIG. 1. Schematic diagram of regions of P. falciparum 3D7 AMA-1 ectodomain expressed for use in this study. Numbers refer to the amino acid residue of the P. falciparum AMA-1 sequence (Gen Bank accession number U65407.1); downward tick marks represent the relative positions of conserved cysteine residues. For D I+III, the construct was a chimera that linked D I residue# 308 to D III residue# 419. Forward and reverse primers, respectively, used for PCR amplification for each of the constructs were as follows: D I, GGAACCGGCGCCGCAG and CTGCAGGTTTTTACGCGGGCACAC; D II, GCGTAAAAACCTGCAGAAC and CGGAAAGTTGTTTTCCACTTC; D III, CTGATTAACAACAGCAGCTAT and GCGGCCGCTTCATCTTTAGA, D I+II, GGAACCGGCGCCGCAG and CGGAAAGTTGTTTTCCACTTC; D II+III, GCGTAAAAACCTGCAGAAC and TGTGGCGGCCGCTTCATCTTTAGA, D I+III, GGAACCGGCGCCGCAG- (-CTGATTAACAACAGCAGCTAT) and CTGCAGGTTTTTACGCGGGCACAC- (-GCGGCCGCTTCATCTTTAGA), where the sequences in parentheses indicate the end of DI and the beginning of DIII, respectively.
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Purification of the subdomain fragments.
The E. coli cell pastes were solubilized in a buffer containing 15 mM Na2HPO4, 5.1 mM KH2PO4, 450 mM NaCl, and 2.5% sodium N-lauroylsarcosine (Sarkosyl) (pH 7.4) at a concentration of 10 ml of buffer/g of cell paste. The cells were disrupted by a single pass through a high-pressure microfluidizer (model 1109; Microfluidic Corp., Newton, Mass.). Following clarification by centrifugation (12,000 x g, for 45 min at 4°C), supernatants containing the recombinant proteins were incubated by a batch method with nickel nitrilotriacetic acid (Ni-NTA)-agarose chelating resin (0.4 ml of resin/g of cell paste) (Qiagen Inc.) at room temperature (RT) (
22°C) for 1 h in the presence of 35 mM imidazole. The resin was then loaded into a fritted column, and the unbound proteins were allowed to flow through. The resin was washed with a minimum of 40 column volumes (cv) of 20 mM NaHPO4-450 mM NaCl-10 mM imidazole-0.125% Sarkosyl (pH 7.4) followed by 10 cv of 20 mM NaHPO4-15 mM imidazole (pH 8.0). Bound proteins were eluted with 500 mM imidazole in 20 mM phosphate buffer containing 0.125% Sarkosyl (pH 8.0). Proteins eluted from the Ni-NTA-agarose were rapidly diluted to 30 to 40 µg/ml in a redox-coupled GSH-GSSG solution and allowed to fold overnight as described previously (7). After the refolding period, the protein solution was pH adjusted (to 5.8 for D I and D II, 6.4 for D III, and 6.0 for all double domains) and passed through preequilibrated SP Sepharose (Amersham Pharmacia Biotech) (
0.3 ml of resin/g of cell paste). The resin-bound protein was washed with a minimum of 50 cv of 20 mM NaHPO4-1mM EDTA containing 100 mM NaCl (for double-domain constructs) or 250 mM NaCl (for single-domain constructs) at pH 6.0. The bound protein was eluted with 20 mM NaHPO4-1 mM EDTA (pH 7.4) plus 150 mM NaCl (pH 6.0) (for single-domain constructs) 300 mM NaCl (pH 6.0) (for D I+II), or 400 mM NaCl (pH 6.0) (for D I+III and D II+III).
Purity.
Purity was analyzed on precast 4 to 12% Bis-Tris gels (NuPage; Invitrogen, Carlsbad, Calif.) run as recommended by the manufacturer and stained with Coomassie blue. Additional analysis was carried out by reversed-phase high-performance liquid chromatography (HPLC) using a Waters-510 HPLC pump connected to a Waters-712 WISP auto sampler and controlled by Millennium (Release 3.2) chromatographic software. A Waters 2487 dual
absorbance detector was used to monitor the elution profile at 215 and 280 nm. Reversed-phase chromatographic analysis was done with a Symmetry 300 C4 column (pore size, 5 µm; 4.6 by 150 mm) (Waters Corp., Milford, Mass.) at a flow rate of 3 ml min1 and 10 µg of protein per load. Solvent A was 0.1% trifluroacetid acid in H2O; solvent B was 0.1% trifluoroacetic acid in acetonitrile. The solvent gradient consisted of 90% solvent A for 5 min, 90% to 10% solvent A over 30 min, 10 to 90% solvent A over 5 min, and reequilibration at 90% A for 10 min. Bovine serum albumin (BSA) and RNase A were used as standards for column resolution.
Molecular mass, reduction and alkylation, and free thiol analyses. Purified domain protein samples were analyzed for mass by matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) mass spectrometry (Voyager Biospectrometry PR System; Applied Biosystems) with a sinapinic acid matrix. Lysozyme and cytochrome c were used as mass standards. Protein reduction was achieved by incubation with a 100-fold molar excess of dithiothreitol over cysteines in the presence of 4 M urea, and alkylation was carried out with a 1,000-fold molar excess of iodoacetamide over cysteines for 1 h at room temperature in the dark. Free sulfhydryl groups were estimated in the presence and absence of 4 M guanidine-HCl by using Ellman's reagent (5,5'-dithio-bis-3-nitrobenzoic acid). L-Cystine was used to plot the standard curve.
SDS-PAGE and immunoblot analyses. Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) using precast 4 to 12% Bis-Tris gels and Western blotted as described previously (7), except that the blots were washed with phosphate-buffered saline plus 0.5% Tween 20 (PBST) and developed with BM Blue POD or nitroblue tetrazolium/5-bromo-4-chloro-3-indolylphosphate (NBT/BCIP; Roche, Indianapolis, Ind.) substrate as recommended by the manufacturer.
Preparation of rabbit sera. Groups of New Zealand White rabbits (n = 3) were immunized subcutaneously with 100 µg of each double-domain protein construct emulsified in Montanide ISA-720 (Seppic Inc., Paris, France) as described previously (7). Research was conducted in compliance with the Animal Welfare Act and other Federal statutes and regulations relating to animals and experiments involving animals. All procedures were reviewed and approved by the Walter Reed Army Institute of Research Institutional Animal Care and Use Committee and performed in a facility accredited by the Association for Assessment and Accreditation of Laboratory Animal Care, International.
ELISA. Antibody responses were evaluated by enzyme-linked immunosorbent assay (ELISA). Ninety-six-well microtiter plates (Dynax, Chantilly, Va.) were incubated overnight at 4°C with 50 µl of a 2-µg/ml solution of either AMA-1 ectodomain (7) or individual domain fragments. The plates were blocked at RT for 1 h with PBST containing 5% casein (Sigma, St. Louis, Mo.) and then washed with PBST. Consecutive two-fold dilutions of individual rabbit sera were incubated for 2 h at RT. The plates were washed and incubated with 1:5,000-diluted horseradish peroxidase/alkaline phosphatase-conjugated secondary antibody for 1 h. They were then washed and developed for 30 min with NBT-BCIP-peroxidase substrate (Kirkegaard & Perry Laboratories, Gaithersburg, Md.). The absorbance at 405 nm was recorded, and comparative ELISA titers were calculated using regression analysis on the titration curve. The ELISA was repeated three times for each individual serum sample, in triplicate wells; on separate days.
Competition ELISA. Competition ELISA was done using sera from rabbits immunized with AMA-1 ectodomain (7). This was diluted 1:32,000 and preincubated, with constant mixing, overnight at 4°C with 1 µM AMA-1 ectodomain, D I, D II, D III, D I+II, D II+III, DI+III or BSA. The tubes were centrifuged at 18,500 x g for 15 min, and the supernatants were analyzed by ELISA with AMA-1 ectodomain as the capture antigen.
Indirect IFA. Recognition of P. falciparum 3D7 schizonts by anti-AMA1 domain antibodies was analyzed by an indirect immunofluorescence assay (IFA) as described previously (7).
Parasite culture and GIA. P. falciparum (3D7) cultures and GIA were performed as described previously (7, 12). Briefly, cultures were grown in 48-well plates and kept in suspension culture by rotation on a platform or under static conditions. Control serum or immunoglobulin G (IgG) (dialyzed into RPMI-NaOH) was added to a final hematocrit of 4%. To assess the antigen specificity of the antibody-mediated inhibitions, antigens (D I, D II, D III, D I+II, D II+III, D I+III, AMA-1 ectodomain, or BSA) were added to the IgG preparations (0.5 mg/ml) before the GIA was performed. The final concentration of each test protein in the GIA was 0.5 µM. Merozoites were released after approximately 34 h, and developing ring stages were harvested 14 h postinvasion, stained with Hoechst dye 33342, and analyzed by flow cytometry. The fluorescence signal was determined for a minimum of 40,000 erythrocytes gated on forward scatter. The fluorescent signal of ring-infected erythrocytes was about 20 times that of uninfected erythrocytes, and the signal of schizont-infected erythrocytes, if present, was about another 20-fold above that. Almost all (>99%) of the parasites harvested from the assays were ring forms or early trophozoites stages, as confirmed by spot checks of Giemsa-stained thin smears. The percent inhibition was calculated from the mean parasitemia of triplicate test and control wells as 100% (test/control). Sera from rabbits immunized with the adjuvant and PBS were used as controls in the GIA. Prebleeds from individual rabbits were tested, and the results were used as controls in the GIA.
To assess the antigen specificity of the antibody-mediated inhibitions, proteins (D I, D II, D III, D I+II, D II+III, D I+III, AMA-1 ectodomain, or BSA) were added to the IgG preparations (0.5 mg/ml) before the GIA was performed. The final concentration of each test protein in the GIA was 0.5 µM.
Statistical analysis. Microsoft Excel was used to calculate the P values for the two-tailed t tests and the correlation coefficients (r2). For the data presented in Fig. 6 and 7, estimates of means, confidence intervals, and hypothesis tests were generated using bootstrap. Each of the available data sets was resampled (bootstrapped) 10,000 times. The observed bootstrap probability estimates reported here are consistent with estimates obtained by assuming that bootstrap means and variances are asymptotically normal. The S language for statistical programming (R v1.8.0) was used to develop the bootstrap estimates. Specific language elements used included the "boot" library and the "Marsaglia-Multicarry" random-number generator.
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FIG. 6. GIA of purified IgG from rabbit sera immunized with each of the multidomain constructs. Solid bars, IgG at 0.5 mg/ml; open bars, IgG at 1.0 mg/ml. Error bars represent the upper and lower confidence intervals of the bootstrap analysis.
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FIG. 7. Reversal of the AMA-1 antibody growth inhibition activity by protein domains. AMA-1 domains were added to cultures of P. falciparum 3D7 grown in the presence of 0.5 mg of anti-D I+II+III rabbit IgG per ml. Reversal of inhibition by a specific domain was calculated as the difference of inhibition percentages between cultures containing anti-D I+II+III antibodies and cultures containing antibodies plus 0.5 µmol of that domain per liter. Assays were performed in triplicate, and data in the figure represent bootstrap estimates for 95% confidence intervals on mean reversal, assuming normal distribution. Error bars represent the upper and lower confidence intervals of the bootstrap analysis.
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FIG. 2. Coomassie blue-stained SDS-PAGE gel of purified protein from each domain construct, as listed above each panel. The proteins in each panel are (left to right) refolded, reduced, reduced and alkylated. MW, molecular weight.
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Recognition by antibodies. We used several different experimental conditions to determine the extent of recognition of the domains by antisera made against the entire ectodomain (D I+II+III). All six recombinant constructs were recognized on Western blots at the appropriate molecular masses by antibodies in a polyclonal rabbit serum raised against D I+II+III (reference 7 and data not shown) and by a pool of P. falciparum-infected sera collected from western Kenya (Fig. 3). Constructs D I and D I+III were less reactive than the other domains. There was no recognition of these domains in analyses with normal human or rabbit sera at the same concentration (data not shown). MAb 4G2dcl, known to bind to a conformation-dependent epitope within the region encompassing D I+II (16), recognized recombinant D I+II, as shown by Western blotting and ELISA run under nonreduced conditions (data not shown). None of the other constructs were recognized by MAb 4G2dc1 either by ELISA or by Western blotting.
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FIG. 3. Western blot of each purified construct. A 100-ng amount of each purified nonreduced protein was subjected to SDS-PAGE, electrophoretically transferred to nitrocellulose membranes, and reacted with a pool of sera (diluted 1:1,000) from people who lived in a malaria-endemic area of Western Kenya. MW, molecular weight.
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FIG. 4. Percentage of antibodies (y axis) made against the P. falciparum 3D7 AMA-1 ectodomain (D I+II+III) that bind to individual domain constructs. Most of the antibodies generated by D I+II+III were directed to epitopes present in the D I+II region (P < 0.00008). The 100% point is equivalent to the ELISA value of anti-D I+II+III antibody that bound to D I+II+III protein. Error bars represent the variation observed in triplicate wells in two experiments.
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35%), while D II and D III depleted 28 and 26%, respectively. Recombinant subdomains induce high-titer antibody responses in rabbits. Immunization of rabbits (n = 3) with each of the three double-subdomain fragments induced high-titer antibodies (Table 1). On indirect IFA, all of these antibodies reacted with schizont forms from P. falciparum 3D7 at a dilution of 1:5,000. The reactivity of rabbit anti-double-domain antibodies with P. falciparum AMA-1 was confirmed by immunoblot analyses. Rabbit antibodies obtained by immunization with all three double-domain constructs (D I+II, D II+III, and D I+III) predominantly recognized two bands (Fig. 5) corresponding to the previously identified 83- and 66-kDa full-length and processed forms of AMA1 in P. falciparum (4, 8, 16, 25).
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TABLE 1. Summary of ELISA and IFA results for rabbits immunized with AMA-1 double domains
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FIG. 5. Western blot of total parasite extract probed with rabbit antisera made against domain constructs D I+II, D II+III or D I+III. P. falciparum 3D7 schizonts were extracted with 10% SDS, subjected to SDS-PAGE under nonreducing conditions, and transferred to a nitrocellulose membrane. The blot was treated with postimmune rabbit serum against each of the three double domains, as indicated. Prebleed serum from each rabbit was negative (data not shown).
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Using two chromatographic columns, procedures were developed that yielded recombinant proteins of >85% purity. The final yield of recombinant protein per gram of bacterial biomass was two- to threefold higher for D I+II than for D I+II+III (7), most probably a reflection of the simpler disulfide bond formations in the smaller construct. It has been show that the disulfide bond-restrained conformation is critical for AMA-1 to induce growth-inhibitory antibodies after vaccination of rabbits (7). MAb 4G2dc1 has been used as a marker to identify a disulfide bond-dependent conformational epitope in AMA-1 (D I+II+III). This MAb bound to D I+II but not to the other single or double domains, indicating that the critical conformational epitope was maintained within D I+II. Our laboratory has produced seven MAbs against D I+II+III, all of which were directed against epitopes that required D II. Similar to 4G2dc1, these antibodies were epitope reduction sensitive (A. Barbosa, unpublished data). Although we do not have data about conformation specific MAbs that recognize D I, D III, or D I+III, recognition of these proteins by immune sera, mobility shifts on SDS-PAGE after reductive alkylation, sharp-and symmetric peaks on RP HPLC analysis, and the absence of free cysteine content in these preparations indicated that they were homogeneous and correctly folded.
Our data indicate that, using our adjuvant with the proteins in rabbit immunizations, D I+II is the most immunogenic region within the P. falciparum 3D7 AMA-1 D I+II+III, while D II is the most immunogenic domain among the three single domains. It is evident from direct and competition ELISA that single domains on their own are less immunogenic than the whole ectodomain. This was further confirmed by the reversal of growth inhibition in the GIA. The addition of the D I+II protein to purified IgG made against the entire ectodomain of AMA-1 resulted in significant reversal of the growth-inhibitory capacity of that IgG preparation. The effect was negligible when D I, D II, D III, D II+III, or D I+III was added. The results suggested that single domains, on their own, do not induce significant inhibitory antibodies and that the combination of D I+II plays large role in the total inhibitory activity of anti-D I+II+III antibodies.
To test the potential of domain-specific antibodies to inhibit invasion in the GIA, we immunized rabbits with the purified double-domain proteins D I+II, D II+III, and D I+III. A positive indirect IFA result with late-stage schizonts of P. falciparum 3D7 parasites and Western blot recognition of the native AMA-1 from parasite lysate with these antibodies suggested a close similarity of these recombinant preparations to the native parasite antigens and the recombinant vaccine construct containing D I+II+III (7). The ELISA titers were equally high for all three double domains; however, only antibodies from rabbits immunized with the D I+II construct could significantly inhibit parasite growth in the GIA. A low level of inhibition was measured with antiserum to D II+III, and, although D I+III induced high-titer antibodies (titer, 106), these antibodies were unable to inhibit parasite growth in vitro. These data demonstrated that a portion of the region defined within the recombinant D I+II induced a majority of the antibodies that are active in the GIA. Hodder et al. (14) suggested that most inhibitory antibodies were directed against D I because that region contained a majority of the amino acid differences seen among three P. falciparum strains (3D7, D10, and HB3) that were inhibited to different degrees in a GIA. Recent studies of D I, the most variable region in AMA-1 (9, 22, 29), suggested that naturally acquired protective immunity targets domain I (3). D I, in the context of D I+III, did not induce any inhibitory antibody, did not significantly inhibit anti-D I+II+III antisera in the competition ELISA, and did not reverse the growth-inhibitory qualities of anti-D I+II+III. While the D I amino acid sequence in the D I+III construct is 11 amino acid residues shorter then the D I domain alone (due to construction restraints encountered during PCR linking of the gene segments), the data still suggest that only in combination with the D II protein does D I express the structured epitopes that potentially can be blocked by antibody to prevent parasite invasion.
Polyclonal antibodies and MAbs against AMA-1 block the invasion of erythrocytes by merozoites. A majority of the epitopes that induce these inhibitory antibodies are conformational and are destroyed on reduction of the disulfide bonds. Due to the problems of disulfide bond formation with proteins expressed in bacteria, the yield of correctly folded full-length ectodomain in this system is low. This study was initiated, in part, to examine the possibility of using smaller AMA-1 constructs, which may be expressed at high levels in bacteria yet still function as effective malaria vaccines. To that end, this study has demonstrated that subdomains of AMA-1 can be expressed at high levels in E. coli. In addition, we showed that a polypeptide encompassing a region defined by D I+II can bind most of the antibodies induced on immunization with D I+II+II and that this construct induced potent growth-inhibitory antibodies. However, the overall GIA activity was lower than that observed with antibodies to the D I+II+III construct. Thus, D III may also contain important protective epitopes. Indeed, recently a virosomal formulation containing a synthetic peptide corresponding to D III of AMA-1 has shown growth-inhibitory activity against parasites (24).
This work was performed while P.V.L. and S.D. held National Research Council Research Associate awards at WRAIR and was supported in part by a grant from USAID.
The views expressed here are those of the authors and should not be construed to represent those of the U.S. Department of the Army or the U.S. Department of Defense.
Present address: School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India. ![]()
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