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Infection and Immunity, August 2004, p. 4895-4899, Vol. 72, No. 8
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.8.4895-4899.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Inactivation of the ciaH Gene in Streptococcus mutans Diminishes Mutacin Production and Competence Development, Alters Sucrose-Dependent Biofilm Formation, and Reduces Stress Tolerance
Fengxia Qi,* Justin Merritt, Renate Lux, and Wenyuan Shi
Department of Oral Biology and Molecular Biology Institute, UCLA School of Dentistry, Los Angeles, California 90095
Received 23 December 2003/
Returned for modification 1 March 2004/
Accepted 26 April 2004

ABSTRACT
Many clinical isolates of
Streptococcus mutans produce peptide
antibiotics called mutacins. Mutacin production may play an
important role in the ecology of
S. mutans in dental plaque.
In this study, inactivation of a histidine kinase gene,
ciaH,
abolished mutacin production. Surprisingly, the same mutation
also diminished competence development, stress tolerance, and
sucrose-dependent biofilm formation.

TEXT
Streptococcus mutans is considered the major etiologic agent
in causing human dental caries (
21,
22). In addition to the
known virulence properties, such as biofilm formation and acid
production and tolerance, most clinical isolates of
S. mutans elaborate antimicrobial peptides called mutacins (
5,
12). Mutacins
exhibit antimicrobial activity against closely related streptococcal
species and other gram-positive bacteria. The ability to produce
mutacin may play an important role in the sustained existence
of
S. mutans in dental plaque (
11,
14). So far, two types of
mutacins have been characterized at the molecular level: the
lantibiotics, represented by mutacins I, II, and III (
25,
28,
29), mutacin JH1140 (
15), and mutacin B-Ny266 (
24); and the
nonlantibiotic bacteriocins, represented by mutacin IV (
27)
and mutacin N (
1). The lantibiotics are small peptides that
are ribosomally synthesized and posttranslationally modified
(
31) and, in general, have a wider spectrum of activity than
the nonlantibiotic bacteriocins.
The regulation of lantibiotic production has been shown to be mediated by a two-component signal transduction system (TCSTS) for nisin, subtilin, and related lantibiotics (9, 18). A TCSTS comprises two proteins, a histidine kinase sensor and its cognate response regulator (33). The histidine kinase sensor binds to a specific signal molecule, which triggers autophosphorylation. Signal transduction from the phosphorylated kinase sensor to the response regulator enables it to activate or repress transcription of its target genes. In previous studies with the lantibiotic mutacin II, Qi et al. demonstrated that a specific transcription activator, MutR, is required for transcription activation of the mutacin operon, and no other regulators appeared to be required (26). In contrast, regulation of mutacin I production appeared to be more complicated. In addition to a requirement for MutR, mutacin I production was also dependent on culture conditions that produced large bacterial aggregates (27; C. Bordador and F. Qi, unpublished data). In our efforts to find additional regulators for mutacin I production, we found a gene, ciaH, whose inactivation abolished mutacin I production. Surprisingly, the same mutation also affected other cellular functions.
Inactivation of ciaH abolished mutacin I production.
S. mutans strain UA140 was a clinical isolate from a severe caries lesion. Our investigators demonstrated earlier that UA140 produces two mutacins, the lantibiotic mutacin I and the nonlantibiotic mutacin IV (27). Previous studies have shown that production of mutacin I appears to be regulated by cell density, suggesting that signal transduction systems may be involved (27, 29). In order to find potential regulators, a BLAST search of the S. mutans UA159 genome sequence database was performed using known TCSTS sequences as queries. This search revealed 13 pairs of TCSTS sequences; 5 of these were chosen for further characterization based on their homology to other TCSTS sequences known to be involved in various stress responses. As an initial screen, only the histidine kinase gene from each pair was inactivated. Because these genes were the last gene of their respective operons, they could be disrupted by a single crossover integration without complications of polar effects. Typically, a
300-bp internal fragment close to the 5' end of the gene was amplified by PCR using an upstream forward primer with an EcoRI site incorporated at its 5' end and a downstream reverse primer with a BamHI site incorporated at its 5' end. The fragment was digested with EcoRI and BamHI and cloned into the suicide vector pJY4164 digested with the same enzymes. The plasmid was transformed into UA140 using standard transformation procedures (32). Ten erythromycin-resistant transformants were randomly selected and tested for mutacin production on trypticase soy broth plus yeast extract (1%) plates by the deferred antagonism assay (5) using OMZ176 and NY101 as indicator strains. OMZ176 is a Streptococcus sobrinus strain which is sensitive only to the lantibiotic mutacins, and NY101 is a Streptococcus sanguis strain which is sensitive to both the lantibiotic mutacin I and the nonlantibiotic mutacin IV (F. Qi et al., unpublished data). Of the five histidine kinase genes (ciaH [SMu1031], spaK [Smu0602], phoR [Smu0946] (6), scnK [SMu1652] (17), and hk11 [SMu1407]) (3), only ciaH inactivation resulted in a total loss of mutacin I production (Fig. 1A). Since the same mutation did not affect mutacin IV production (Fig. 1B), this result suggested that ciaH may have specifically affected lantibiotic mutacin production. To test this, the same mutation was introduced into T8, a lantibiotic mutacin II-producing strain (25), to yield T8ciaH. As shown in Fig. 1, the ciaH mutation did not have a significant effect on mutacin II production. Taken together, these results suggest that the production of mutacin I and mutacin II is probably controlled by different regulatory mechanisms and that ciaH is required specifically for the production of mutacin I.
Inactivation of ciaR did not exert a significant effect on mutacin I production.
Given the fact that most (if not all) of the TCSTS were arranged
as two-gene operons with the histidine kinase and the response
regulator occurring as cognate pairs, we were interested in
determining the function of
ciaR, the putative response regulator
of
ciaH in the
ciaRH operon. The
ciaR gene was inactivated by
using a terminatorless kanamycin resistance gene cassette insertion
to prevent a polar effect on the downstream
ciaH gene. A 1.38-kb
DNA fragment encompassing regions upstream of
ciaR and part
of
ciaH was generated by PCR and cloned into a TA cloning vector,
pCRII (Invitrogen Co., San Diego, Calif.). The terminatorless
kanamycin resistance gene cassette (
aph III) (
35) was inserted
into the
ciaR gene at a unique HincII site in the middle of
the gene in the same orientation. The plasmid was linearized
and transformed into UA140. Upon integration into the chromosome
through homologous recombination at the
ciaR locus, the recombinants
were selected on Todd-Hewitt (TH) plates with 800 µg of
kanamycin/ml and the insertion was confirmed by PCR. Reverse
transcription-PCR was also performed to verify that the insertion
had no polar effect on transcription of the downstream
ciaH gene (data not shown). Ten isolates were then tested for mutacin
production; one of them is shown in Fig.
2. It is apparent that
the
ciaR mutation did not exert much effect on production of
any of the mutacins tested, although a slight increase in inhibition
zone was observed for mutacin I (Fig.
2A). This result indicates
that the
ciaR gene is not required for mutacin biosynthesis.
ciaH gene inactivation diminished competence development.
One of the major effects of
ciaRH mutations in
Streptococcus pneumoniae occurs with competence development (
8,
10,
23). Insertional
inactivation of
ciaR and
ciaH results in derepression of competence
both in aerobic and microaerobic cultures (
7). Since the CiaR
and CiaH proteins in
S. mutans share a high degree of similarity
with the CiaR and CiaH proteins, respectively, in
S. pneumoniae (89% identity and 93% similarity for CiaR; 55% identity and
72% similarity for CiaH), it was logical to test if the
S. mutans ciaR and
ciaH genes were also involved in competence development.
We performed transformation assays using chromosomal DNA isolated
from a UA140 derivative strain carrying a tetracycline resistance
marker. Transformation assays were performed following standard
procedures (
26,
32) in competence development medium (TH broth
[THB; 0.9% beef heart digest, 1.1% pancreatic digest of casein,
0.3% soybean peptone, 0.2% glucose, 0.25% sodium carbonate,
0.2% sodium chloride, and 0.05% monosodium phosphate] plus 0.2%
bovine serum albumin). The experiments were repeated three times,
and each time the transformation efficiency of the wild-type
(wt) strain was arbitrarily assigned as 100%. The transformation
efficiency of the mutants was calculated as the ratio of the
number of transformants per milliliter of competent cells of
the mutant versus that of the wt, times 100. The results showed
a dramatic reduction in transformation efficiency for the
ciaH mutant strain (

0.1% ± 0.01% of the wt level). Surprisingly,
the transformation efficiency for the
mutR mutant strain did
not show a significant reduction (73% ± 32% of the wt
level).
ciaH gene inactivation altered sucrose-dependent biofilm formation.
In the oral cavity, S. mutans mostly exists in biofilms known as dental plaque. Biofilm formation by S. mutans involves two processes: sucrose-independent initial attachment mediated by surface binding proteins, and sucrose-dependent biofilm formation mediated by glucans synthesized by the glucosyltransferases (Gtfs) from sucrose (36, 37). In vitro, especially on glass surfaces, the latter process appears to play a more important role; without sucrose, the biofilm remains weakly associated with the surface and is very sensitive to shear force. Since biofilm formation was found to be regulated by the competence genes comCDE (20), we performed assays to test if the ciaH gene also was involved in biofilm formation due to its role in competence. UA140 and the mutant derivatives were grown overnight in THB (Difco Laboratories, Detroit, Mich.) at 37°C anaerobically. The culture was diluted 1:20 into fresh THB and further incubated until the culture reached an optical density at 600 nm of 0.5. The culture was then diluted 1:1,000 into THB containing 1% sucrose, and 0.4 ml of this cell suspension was added to each well of an eight-well Lab-Tek II chamber slide system (Nalge Nunc International, Naperville, Ill.). The chamber was incubated at 37°C for 20 h as a static culture to allow for biofilm formation. The supernatant was removed, and a labeling solution containing TH plus 0.2 mM CellTracker Orange (Molecular Probes) was added to the biofilm. The labeling proceeded for 2 h to allow live cells to metabolize the dye and develop fluorescence.
Biofilms were analyzed by confocal laser scanning microscopy. In our initial studies, we noticed that without disturbance the biofilm formed by 140ciaH appeared thicker than the one observed for the wt. However, this mutant biofilm did not attach tightly to the surface and was easily disrupted when rinsed. To get a clear picture of the apparent sensitivity of this particular biofilm to shear forces, we imaged the biofilm in two steps. First, biofilms were rinsed by gently adding and then removing 0.5 ml of phosphate-buffered saline, using a pipettor. After the image was taken (Fig. 3A to C), the biofilm was rinsed again with a squirt bottle to wash off loosely attached cells and a second image was taken (Fig. 3D to F). To minimize possible inconsistencies resulting from washing, biofilms were also washed with running water at a constant flow rate, and similar results were obtained (data not shown). As shown in Fig. 3, both the wt and the mutant strains formed similar dome-like microcolonies. However, despite a similar microcolony architecture, the gently rinsed biofilm of 140ciaH was much thicker than that of the wt (Fig. 3A to C). A closer inspection of the cross-sections of 140ciaH revealed that the majority of the dome-like microcolonies were not attached to the glass surface (Fig. 3B, side panels). Instead, they attached to each other to form a multilayered sheet that was loosely attached to the surface. In contrast, the biofilms of the wt and the ciaR mutant consisted of a single layer of microcolonies that were all attached to the surface (Fig. 3A and C). When the wash was applied more forcefully by using a squirt bottle or running water, the biofilm formed by 140ciaH came off with only a few microcolonies remaining attached (Fig. 3E). In contrast, the biofilm formed by the wt and the ciaR mutant remained intact even after such a vigorous wash (Fig. 3D and F). To see if this phenotype was caused by the artificial growth medium, we tested biofilm formation in sterile saliva supplemented with 20% THB and 1% sucrose. As shown in Fig. 3G to I, the same results were obtained. More interestingly, on the saliva-coated surface, clear marks were shown on the slide surface of the 140ciaH biofilm (Fig. 3H). These marks were probably left by detached microcolonies taking with them saliva deposits on the glass surface. Taken together, these results indicate that the ciaH mutation diminishes sucrose-dependent surface attachment for biofilm formation.
Sucrose-dependent biofilm formation plays a pivotal role in
the cariogenicity of
S. mutans (
36). In addition to the
gtf genes that are required for glucan synthesis and biofilm formation
(
4,
16,
36), a number of other genes have been reported recently
which affect sucrose-dependent biofilm formation (
13,
30,
34).
Some of these genes encode proteins associated with the cell
wall (WapA) (
30), and others may be involved in cell membrane
synthesis or cell surface structures (
13,
34). While these genes
can be called terminal or effector genes, no regulatory gene
has been reported to be involved in regulation of this importance
function. Of the three TCSTS that have been reported to be involved
in biofilm formation, all were studied in the absence of sucrose
(
2,
19,
20,
37). To our knowledge,
ciaH is the first regulatory
gene reported to affect sucrose-dependent biofilm formation.
The ciaH gene is involved in acid tolerance.
The results presented above suggest that the ciaH gene may act as a global regulator controlling multiple cellular functions. Previous studies have shown that some of the genes regulating competence development or biofilm formation in S. mutans were also involved in regulating acid tolerance (19). Therefore, we were interested in determining if the ciaH gene was also involved in acid tolerance. To measure the acid sensitivity of the ciaH mutant, we grew UA140, 140ciaH, and 140ciaR in THB overnight. The cultures were then diluted 1:40 into THB and THB pH 6.4 and incubated at 37°C as static cultures. Samples were taken at designated time points, and the cell density was measured as the optical density at 600 nm. As shown in Table 1, the ciaH mutant exhibited a 60% reduction in growth rate when grown at pH 6.4; in comparison, the wt and the ciaR mutant showed only 20% reduction in growth rate under the same conditions. This difference in growth rate under acidic conditions between the wt and the ciaH mutant was statistically significant (P = 0.0006). These results suggest that the ciaH mutation greatly reduced acid tolerance in strain UA140.
In summary, we characterized a putative histidine kinase gene,
ciaH, in
S. mutans. Inactivation of
ciaH abolished mutacin production,
diminished competence development, altered sucrose-dependent
biofilm formation, and significantly reduced acid tolerance.
Although
ciaH and
ciaR are in the same genomic organization
as the
ciaRH operon in
S. pneumoniae, unlike the
ciaRH system
in
S. pneumoniae, inactivation of the putative cognate regulator
ciaR did not reveal any conspicuous phenotype. A possible explanation
is that CiaH may have a second cognate regulator located at
a different location which is responsible for regulation of
the above cellular functions. Assays for protein-protein interactions,
such as the yeast two-hybrid system or in vitro biochemical
analysis with purified proteins, will be required to resolve
this question.

ACKNOWLEDGMENTS
We thank J. Yother for providing the plasmid pJY4164 and F.
Gu for assistance in statistical analysis. We greatly appreciate
the public release of the
S. mutans sequence data from the
Streptococcal mutans Genome Sequencing Project funded by a U.S. Public Health
Service, National Institutes of Health (NIH) grant from the
Dental Institute and B. A. Roe, R. Y. Tian, H. G. Jia, Y. D.
Qian, S. P. Lin, S. Li, S. Kenton, H. Lai, J. D. White, R. E.
McLaughlin, M. McShan, D. Ajdic, and J. Ferretti from the University
of Oklahoma.
This work was supported in part by NIH grant R01 DE 014757 to F. Qi, NIH MPTG Training Grant T32-AI07323 to J. Merritt, and a BioStar/C3 Scientific Corporation grant and a Washington Dental Service Grant to W. Shi.

FOOTNOTES
* Corresponding author. Mailing address: Department of Oral Biology and Medicine, UCLA School of Dentistry, P.O. Box 951668, Los Angeles, CA 90095-1668. Phone: (310) 267-2767. Fax: (310) 794-7109. E-mail:
fqi{at}dentnet.dent.ucla.edu.

Editor: V. J. DiRita

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Infection and Immunity, August 2004, p. 4895-4899, Vol. 72, No. 8
0019-9567/04/$08.00+0 DOI: 10.1128/IAI.72.8.4895-4899.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
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