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Infection and Immunity, November 2005, p. 7569-7577, Vol. 73, No. 11
0019-9567/05/$08.00+0 doi:10.1128/IAI.73.11.7569-7577.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Vaccine Research Section, National Institute on Deafness and Other Communication Disorders, Rockville, Maryland 20850,1 Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 306022
Received 2 August 2005/ Returned for modification 10 August 2005/ Accepted 16 August 2005
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Active immunization with a vaccine would be an efficient approach for the prevention of M. catarrhalis infections. At present, we have only limited knowledge about which antigens confer protective immunity against M. catarrhalis infections. Whole cells or components on the surface of the bacterium, such as outer membrane proteins (OMPs), should induce specific immunity (27). A major obstacle to the development of safe and effective vaccines derived from the cells or outer membrane is the presence of toxic lipooligosaccharide (LOS). LOS is a main outer membrane component of M. catarrhalis and a potential virulence factor in the pathogenesis of infections (9, 12). Unlike the lipopolysaccharide (LPS) of enteric bacteria, M. catarrhalis LOS consists only of an oligosaccharide core and lipid A (10). In contrast to most of the LOS or LPS molecules, the inner core oligosaccharide of M. catarrhalis LOS is attached to 3-deoxy-D-manno-octulosonic acid (Kdo) with a glucosyl residue instead of a heptosyl residue (19, 30). The lipid A portion of the LOS is similar to that of other bacteria (19, 26).
Recently, several genes associated with LOS biosynthesis of M. catarrhalis were reported. Zaleski et al. identified a galE gene encoding UDP-glucose-4-epimerase in M. catarrhalis and showed that the inactivation of the gene resulted in a truncated LOS structure lacking two terminal galactosyl residues (45). Luke et al. showed a kdsA gene encoding Kdo-8-phosphate synthase and found a kdsA-deficient mutant consisting only of lipid A on its LOS molecule (25). Edwards et al. revealed a cluster of three LOS glycosyltransferase genes (lgt) for the extension of oligosaccharide chains to the inner core (11). We also identified a kdtA gene encoding Kdo transferase during the LOS biosynthesis (29). However, information pertaining to the first step of the LOS biosynthesis on the lipid A moiety of the LOS in particular remains unknown.
Our knowledge of the enzymology and molecular genetics of the lipid A biosynthesis is based mainly on the studies of the LPS expressed by the enteric bacteria, especially Escherichia coli (30). In E. coli, the first reaction of lipid A biosynthesis isthe acylation of the sugar nucleotide UDP-N-acetylglucosamine (GlcNAc). The UDP-GlcNAc acyltransferase (lpxA) is selective for catalyzing the transfer of a ß-hydroxymyristoyl moiety from the R-3-hydroxymyristoyl acyl carrier protein to the 3 position of the glucosamine ring of UDP-GlcNAc (4). Inactivation of the lpxA gene may block the initial step of the lipid A biosynthesis pathway, resulting in a bacterium with an LOS-deficient structure. Previous attempts to construct lpxA knockout mutants in E. coli or other gram-negative bacteria failed because a minimal structure of Kdo2-lipid A was required for bacterial viability (15, 30, 31). Several years ago, an LOS-deficient mutant of Neisseria meningitidis was reported when its lpxA gene was inactivated (33). However, the immunogenicity of the cells or of outer membrane components from the mutant strain was reduced greatly (35). To date, no report has documented a comparable mutant from other bacterial species, despite an attempt with both H. influenzae and Neisseria gonorrhoeae (40).
In this work, we identified an lpxA homologue from M. catarrhalis and constructed an lpxA knockout mutant. The mutant was viable in spite of the complete loss of LOS. Further analysis of the physicochemical features and biological functions of the mutant was performed. We found that this mutant was attenuated but was as highly immunogenic as the parental strain.
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TABLE 1. Summary of strains, plasmids, and primers
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Cloning of an lpxA homologue and construction of an lpxA knockout mutant. PCR primers for cloning of the lpxA homologue from strain O35E were designed on the basis of an assumptive M. catarrhalis lpxA sequence predicted by BLAST searches in sequence 37 of the M. catarrhalis genome (NCBI patent number WO0078968). A PCR product was amplified from chromosomal DNA of strain O35E using primers 41 and 42 (Table 1; Fig. 1), and cloned into pCR2.1 using a TOPO TA cloning kit (Invitrogen, Carlsbad, CA) to obtain pCRL (Table 1). The insertion was released by EcoRI-SalI digestion and then subcloned into an EcoRI-SalI site of pBluescript II SK(+) to form pSL. A kanamycin resistance cassette (1,282 bp) obtained from pUC4k after EcoRI digestion was subsequently cloned into the lpxA gene using a HindIII site to form pSLK (Fig. 1).
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FIG. 1. Genetic organization of M. catarrhalis LOS biosynthesis gene cluster containing lpxD, fabZ, and lpxA. Large arrows represent the direction of transcription, and the location of deletion replaced by the kanamycin resistance gene (Kanr gene) is between two HindIII cleavage sites. A gene downstream from lpxA is a putative sodium-dependent transporter (sdt). The sites of primers used are indicated with small arrows (Table 1).
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Southern blotting. The kanamycin resistance gene was amplified from pUC4K as a probe with primers 50 and 51 (Table 1) by using a PCR digoxigenin (DIG) probe synthesis kit (Roche, Indianapolis, IN). Southern blot analysis of the chromosomal DNA from both O35E and O35ElpxA was performed using a DIG DNA labeling and detection kit (Roche) according to the instruction manual. The hybridization temperature of the Southern blot was 42°C, and the washings were done under a high-stringency condition (65°C in 0.5 x SSC [1 x SSC is 0.15 M NaCl plus 0.015 M sodium citrate] with 0.1% SDS).
RT-PCR. Total RNA was isolated from log-phase bacteria of strains O35E and O35ElpxA by using an RNeasy Mini kit and treated with an on-column RNase-free DNase set (QIAGEN). The first-strand synthesis of cDNA was primed with random primers using a high-capacity cDNA archive kit (Applied Biosystems). Primer sets for PCR amplification of target genes fabZ, lpxA, and sdt in cDNA samples are listed in Table 1 and depicted in Fig. 1. In parallel, PCRs were performed with chromosomal DNA samples as positive controls and with cDNA samples without activation of the reverse transcription (RT) as negative controls. The PCR products were resolved on 0.8% agarose gels and visualized by ethidium bromide staining.
Restoration of native LOS in lpxA mutant through reversion to wild type. Primers 48 and 49 (Table 1) were used to amplify native lpxA from chromosomal DNA of the wild-type strain, O35E. The resulting PCR product was purified and used to transform O35ElpxA-competent cells by electroporation as described above. Potential revertant colonies were identified as having lost kanamycin resistance through replicate plating on BHI agar plates with or without kanamycin. One colony that lost kanamycin resistance was chosen as a revertant strain for further analyses. Chromosomal DNA was isolated from the revertant strain and subjected to PCR and sequence analysis to confirm that the wild-type lpxA gene had properly integrated into the genome of the O35ElpxA mutant.
LOS detection. The purification of LOS was performed with wild-type strain O35E, the mutant O35ElpxA, and the revertant strain by use of a proteinase K-treated whole-cell lysate method (38). The resulting extracts from each bacterial suspension (1.9 µg of protein content) were resolved by SDS-PAGE with 15% separating gels and visualized by silver staining for carbohydrates (37). Western blotting was performed using an anti-LOS monoclonal antibody (MAb), 8E7, to detect the LOS (21).
Composition analysis. Thirty to 35 grams (wet weight) of cells from O35E or from O35ElpxA was used for LOS purification by phenol-water extraction (16). Due to the lack of LOS in extracts from O35ElpxA, the O35ElpxA cells were further extracted with phenol-chloroform-petroleum ether (13). Composition analysis of the above extracts was performed by a gas chromatography-mass spectrometry (GC-MS) analysis of trimethylsilyl methylglycosides and of fatty acid methyl esters (44) on an HP-5890 GC interfaced to a mass selective detector, 5970 MSD, using a Supelco DB1 fused silica capillary column (30-mm length by 0.25-mm internal diameter; J &W Scientific, Folsom, CA).
LAL assay. A chromogenic Limulus amebocyte lysate (LAL) assay for endotoxin activity was performed using a QCL-1000 kit (Bio-Whittaker Inc., Walkersville, MD). Overnight cultures from chocolate agars were suspended in BHI broth to OD620s of 0.1, and serial dilutions of these stocks were used as samples.
Susceptibility. The sensitivities of strains to a panel of hydrophobic agents or hydrophilic glycopeptide were assayed using standard disk diffusion assays (43). Bacteria were cultured in BHI broth to OD600s of 0.2, and 100-µl portions of the bacteria were spread onto chocolate agar plates. Antibiotic disks or sterile blank paper disks (6 mm; Becton Dickinson, Cockeysville, MD) saturated with the various agents were plated on the lawn in triplicate, and the plates were incubated at 37°C for 18 h. Sensitivities were assessed by measuring the diameters of the zones of growth inhibition on two axes, and the mean values were calculated.
Bactericidal assay with normal human serum. A complement-sufficient normal human serum pool from eight healthy adult donors was prepared. A 200-µl-scale bactericidal assay was performed in a 96-well plate (25). The normal human serum pool was diluted to 0.5, 2.5, 5.0, 12.5, and 25% in pH 7.4 Dulbecco's phosphate-buffered saline (PBS) buffer (containing magnesium and calcium with 0.05% gelatin). Bacteria (10 µl containing 106 CFU) were inoculated into 190-µl reaction wells containing the diluted normal human serum, 25% of heat-inactivated normal human serum, or the PBS buffer alone. After 30 min of incubation at 37°C, samples were diluted serially (1:10) and plated onto chocolate agar plates. The resulting colonies were counted after 24 h of the incubation.
Adherence assay. Chang (conjunctival; CCL20.2), HeLa (cervix; CCL-2), and A549 (lung; CCL-185) human epithelial lines were cultured in Eagle's minimal essential medium (ATCC, Manassas, VA) supplemented with 10% heat-inactivated fetal bovine serum at 37°C in 5% CO2. A quantitative adherence assay was performed (1). Briefly, a 1-ml portion with 2 x 105 cells was seeded into each well of 24-well tissue culture plates and incubated for 24 h. Bacteria in the logarithmic phase of growth were suspended in PBS buffer at concentrations of 108 CFU/ml. Aliquots (100 µl) of the suspension were inoculated in duplicate into the wells of the 24-well plate containing a monolayer of each cell line. This plate was centrifuged for 5 min at 165 x g and then incubated at 37°C for 1 h. Nonadherent bacteria were removed by rinsing the wells five times with the PBS buffer, and the epithelia were released from the plate by adding 0.05% trypsin-EDTA. This cell suspension was serially diluted in the PBS buffer and spread onto BHI plates to determine the number of viable bacteria. Adherence was expressed as the percentage of bacteria attached to the human cells relative to the original number of bacteria added to the well. The data represented averages of three independent assays.
Pulmonary and nasopharyngeal clearance. Female BALB/c mice (6 to 8 weeks of age), from Taconic Farms Inc. (Germantown, NY), were housed in an animal facility in accordance with National Institutes of Health guidelines under Animal Study Protocol 1158-04. A bacterial aerosol challenge was carried out in mice using 10-ml portions of 1.65 x 109- and 1.80 x 109-CFU/ml suspensions of wild-type strain O35E and mutant strain O35ElpxA, respectively (20). The numbers of bacteria present in the lungs and nasal washes were measured at various time points postchallenge. The minimum numbers for the detection of viable bacteria were 100 CFU per lung (10 ml) and 4 CFU per nasal washing (0.4 ml). Clearance of M. catarrhalis was expressed as the percentage of bacterial CFU detectable at each time point compared with the number deposited at time zero.
Antibody response and challenge study. Eight mice in each group received three subcutaneous injections of 0.2-ml doses containing 1 x 108 CFU of heat-killed whole cells of wild-type or mutant strains or PBS with or without Ribi-700 adjuvant (Corixa Corporation, Hamilton, MT) at 10-day intervals. Blood samples were collected at 2 weeks after the last injection. Serum antibodies were assayed by whole-cell enzyme-linked immunosorbent assay (ELISA), for which ELISA plates were coated with 50 µl of O35E or O35ElpxA (4 x 107 CFU/ml) and dried at 50°C overnight. Other steps were performed as described previously (21). For bactericidal activity against wild-type strain O35E, pooled mouse sera from each group were used after inactivation at 56°C for 30 min. A bactericidal assay was performed (16), and titers were expressed as the last dilution of the sera causing at least 50% killing compared with that caused by a control.
A challenge study was performed with the mice immunized with whole cells of the wild type or of the mutant with Ribi adjuvant. The mice were aerosol challenged with 10 ml of wild-type strain O35E (4 x 109 CFU/ml). The number of CFU present in the lungs was measured at 6 h postchallenge (20).
Statistical analysis. The numbers of viable bacteria were expressed as the geometric mean CFU of six independent observations each ± standard deviations (SD). The antibody titers were expressed as geometric mean ELISA units of eight independent observations ± SD. The significance was analyzed using a two-tailed independent Student's t test. The bacterial clearance rate was analyzed by a chi-square test.
Nucleotide sequence accession number. The nucleotide sequence of the lpxA gene in M. catarrhalis strain O35E was deposited at GenBank under accession number AY648946.
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Construction and characterization of an lpxA knockout mutant. An lpxA mutant was constructed by allelic exchange with a substitution of a kanamycin resistance cassette and a 241-bp deletion within the lpxA coding region, where the lpxA gene was disrupted (Fig. 1). The disrupted lpxA gene was amplified from kanamycin-resistant colonies using primers 42 and 43. Nucleotide sequence analysis of PCR products confirmed that the kanamycin resistance cassette had been inserted into the lpxA gene of the O35E chromosomal DNA at the predicted position. Thus, a mutant strain, O35ElpxA, was generated.
To test whether a single copy of the kanamycin resistance gene was inserted into the genome of wild-type strain O35E, chromosomal DNA of the parental O35E or the mutant O35ElpxA was digested with EcoRV (Fig. 2A) and probed with a DIG-labeled kanamycin resistance gene. Only one band was detected in the chromosomal DNA of the mutant O35ElpxA (Fig. 2B, lane 2), but no band was detected in that of the parental O35E (Fig. 2B, lane 1), showing that there was a single insertion in the genome of the lpxA mutant.
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FIG. 2. Detection of kanamycin resistance gene inserted into O35ElpxA chromosomal DNA by Southern blotting. Lanes 1, 5 µg of chromosomal DNA from O35E plus EcoRV; lanes 2, 5 µg of chromosomal DNA from O35ElpxA plus EcoRV; and lanes 3, 0.2 µg of pUC4K (a plasmid with a kanamycin resistance cassette as positive control) plus EcoRI. Each digested sample was resolved on a 0.7% agarose gel and visualized by ethidium bromide staining (A). Southern blotting was performed using DIG-labeled kanamycin resistance gene probe (B). Lambda DNA/EcoRI-plus-HindIII molecular size standards (Fermentas) are shown in base pairs on the left (lane M).
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FIG. 3. Detection of lpxA gene expression by RT-PCR. The RT-PCRs were performed using the following nucleic acid templates: total RNA from O35E (lanes 1 and 3) and O35ElpxA (lanes 4 and 6), and chromosomal DNA from O35E (lanes 2) and O35ElpxA (lanes 5). Reaction sets contained the following primers: for lanes labeled "a," 44 and 45; for lanes labeled "b," 41 and 42; and for lanes labeled "c," 46 and 47. The controls (lanes 3 and 6) used total RNA as the nucleic acid template without activation of the RT. GeneRuler DNA ladder mix (Fermentas) was used for the molecular size standards in base pairs (lane M).
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FIG. 4. LOS patterns from SDS-PAGE followed by silver staining (A) or Western blotting (B) of M. catarrhalis wild-type strain O35E (lanes 1), mutant O35ElpxA (lanes 2), and the O35ElpxA revertant (lanes 3). Panel A represents extracts from proteinase K-treated whole-cell lysates from each bacterial suspension (1.9 µg of protein content). Anti-LOS MAb 8E7 was used at a 1:100 dilution for panel B. Molecular mass markers (Mark12; Invitrogen) are indicated on the left.
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FIG. 5. Total ion current (TIC) spectrum from GC-MS analysis of 100 µg of phenol-chloroform-petroleum ether extract material from M. catarrhalis mutant O35ElpxA (A) or phenol-water extract material from wild-type strain O35E (B). The components of O35ElpxA were identified as indicated and show the fatty acids C16:0, C18:1, and C18:0, which are constituents of phospholipids (A). The components of O35E showed the sugar constituents Kdo, Gal, Glc, and GlcNAc and specific lipid A fatty acids (3-OHC12:0) (B). Inositol was added as an internal standard.
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Morphology, growth rate, and OMP profile of the lpxA mutant.
O35ElpxA was found to form large, thin, flat, and transparent colonies on the chocolate agar plates compared with the wild-type strain. When the mutant grew in BHI broth, its growth rate was slightly lower than that of the wild-type strain in logarithmic phase (Fig. 6A). However, the wet weight of mutant cells was greater than that of cells of the wild-type strain at stationary phase (overnight growth) by 30 to 50%. Comparative analysis of OMPs by SDS-PAGE indicated that the major OMP profiles of the wild-type and mutant strains were similar, while an approximately 55-kDa protein was dramatically up-regulated and a
16-kDa protein was absent in the mutant strain (Fig. 6B).
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FIG. 6. (A) Growth curves of M. catarrhalis wild-type strain O35E ( ) and mutant O35ElpxA ( ) in BHI broth at 37°C. (B) The corresponding OMP profiles of M. catarrhalis wild-type O35E (left lane) and mutant O35ElpxA (right lane) were visualized by Coomassie brilliant blue staining after SDS-PAGE. Molecular mass marker values are in kilodaltons.
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In a susceptibility test with a broad range of hydrophobic agents and a hydrophilic glycopeptide, the mutant O35ElpxA was more susceptible to most hydrophobic antibiotics and reagents and also to a hydrophilic glycopeptide, vancomycin, than the parental strain was (Table 2).
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TABLE 2. Susceptibilities of M. catarrhalis wild-type strain O35E and mutant O35ElpxA to a panel of hydrophobic agents or hydrophilic glycopeptide
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FIG. 7. Bactericidal activity of normal human serum against M. catarrhalis wild-type strain O35E (black bars) and mutant O35ElpxA (gray bars). "-" stands for 25% of heat-inactivated normal human serum. The data represent the averages of three independent assays.
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In a murine respiratory clearance model after an aerosol challenge, the number of O35ElpxA cells present in lungs was approximately 20-fold lower than that of parental O35E cells right after the challenge (Fig. 8A). Both mutant and wild-type strains had similar clearance rates at 3 h (76.0% and 79.8%) and at 6 h (95.3% and 90.6%). In contrast, the number of the O35ElpxA cells present in nasopharynx was reduced by only twofold right after the challenge (Fig. 8B) compared to the wild-type strain (P < 0.05). However, the mutant showed accelerated clearance rates relative to the wild type at 3 h (90.6% versus 73.5%; P < 0.01) and 6 h (99.7% versus 91.5%; P < 0.05).
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FIG. 8. Time courses of bacterial recovery in mouse lungs (A) and nasal washes (B) after an aerosol challenge with M. catarrhalis wild-type strain O35E ( ) and mutant O35ElpxA ( ). Each time point represents a geometric mean for six mice.
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TABLE 3. Comparison of murine antibody responses and levels of protection provided by immunization with M. catarrhalis strain O35E and mutant O35ElpxA
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Although the M. catarrhalis bacterium did not require LOS for viability, the LOS deficiency resulted in alterations in colony morphology, permeability of the outer membrane, and serum resistance. The O35ElpxA colonies were large, flat, and transparent, and the altered opacity of the lpxA mutant was consistent with results for H. influenzae (42) and N. meningitidis (3), in which changes in LOS structure caused differences in colony opacities. The mutant O35ElpxA was very susceptible to most hydrophobic reagents. This may be caused by the lack of a continuous LOS layer in the outer membrane leaflet and the resultant compensatory presence of glycerophospholipid in this leaflet. This creates glycerophospholipid bilayers or patches in the outer membrane that allow the diffusion of hydrophobic solutes. The mutant was also susceptible to a hydrophilic glycopeptide that was normally excluded by the intact enterobacterial outer membrane, indicating that the outer membrane of the lpxA mutant was probably fragile and transiently ruptured due to lack of the LOS molecule (39). In addition, the lpxA mutant was highly sensitive to the bactericidal activity of a normal human serum pool compared to the parental strain and more sensitive to the normal human serum than a kdtA-deficient mutant with a truncated LOS molecule with a lipid A structure alone was (29). These results suggest that the permeability change on the outer membrane barrier of the lpxA mutant may increase its sensitivity to the complement killing of the serum.
Since M. catarrhalis is a respiratory tract mucosal pathogen, it is possible to evaluate its virulence by observing its interaction with host epithelial cells in vitro and in an aerosol challenge mouse model. The attachment of microbes to host epithelial cells represents the first step in the pathogenesis of microbial infections, with the target specificity being defined by precise adhesin-receptor interactions (36). In our study, the attachment to human epithelia by the lpxA mutant showed nearly a 10-fold reduction in Chang (conjunctival) or HeLa (cervix) cells but nearly a 3-fold reduction in A549 (lung) cells. These data imply that the mutant had reduced adherence to different types of epithelial cells with various affinities. In the mouse challenge model, the lpxA mutant showed reduced rates of attachment to mouse respiratory tracts, especially in the lungs (a 20-fold reduction) immediately after a bacterial challenge. Following the challenge, however, the mutant was rapidly cleared from the nasopharynx but presented a clearance rate in the lungs similar to that of the parental strain. It is not clear whether these changes in the mutant are caused by a direct loss of the LOS moiety on the outer membrane that might result in a deficiency in its interaction with the host cells and/or an increase in its sensitivity to murine complement-mediated killing or by an indirect effect on surface display or expression of the membrane molecules, such as adhesin molecules. Nevertheless, the involvement of the LOS in the ability of M. catarrhalis to attach to the human epithelial cell lines and to survive in vivo in the mouse clearance model raises the possibility that the LOS might be essential for the virulence of the organism in the pathogenesis of M. catarrhalis infections.
Since the LOS-deficient mutant, O35ElpxA, showed attenuated endotoxic reactivity in a LAL assay and reduced virulence features, as suggested by reduced resistance to normal human serum, reduced adherence to human epithelia, and increased clearance in a mouse challenge model, it might be used as a vaccine candidate for further investigation. Recent studies involving vaccine antigens have shown that multiple bacterial components, such as OMPs, outer membrane vesicles, or whole cells, might be preferred, given the ability of the bacteria to vary surface components in response to immunologic pressures (23, 27). The presence of LOS or the difficulty in removing LOS is one major obstacle in developing those vaccine candidates. Construction of a mutant without LOS may help to overcome this problem. However, the immunogenicity of whole cells or of outer membrane components of the meningococcal LOS-deficient mutant was greatly reduced (35). In contrast, the M. catarrhalis lpxA mutant elicited levels of antibodies with bactericidal activity similar to those of its parental strain. It has been reported that bacterial LPS can function as an adjuvant and enhance the immune response to a particular antigen (22). It is unclear whether there may exist an adjuvant component other than LOS in the cell walls of M. catarrhalis that can functionally replace the LOS deficiency or whether other surface components, such as OMPs, present on the LOS-null mutant simply may be as immunogenic as the wild-type strain. In addition, when the Ribi adjuvant was used, the antibody levels elicited by the mutant O35ElpxA and strain O35E were further enhanced by five- to sevenfold. Importantly, the bactericidal titer and the level of protection against the parental O35E provided by immunization with the mutant O35ElpxA were comparable to those of the parental O35E. These results indicated that the mutant bacterium without LOS might be used as a potential vaccine against M. catarrhalis. Future studies are planned and necessary to further access the immunological properties and heterologous protection of the mutant strain and its OMPs or outer membrane vesicles.
In summary, an lpxA knockout mutant is generated in M. catarrhalis strain O35E. The M. catarrhalis LOS is not essential for bacterial survival, though it may be critical in the bacterial virulence. A completely LOS-deficient M. catarrhalis strain is attenuated and highly immunogenic.
This research was supported by the Intramural Research Program of the NIH, NIDCD. The structural analysis was supported by a grant from the Department of Energy (DE-FG09-93ER20097) to the Complex Carbohydrate Research Center.
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1-4Galß1-4Glc) epitope of Moraxella catarrhalis is a factor in resistance to bactericidal activity mediated by normal human serum. Infect. Immun. 68:5261-5268.
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