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Infection and Immunity, September 2005, p. 6119-6126, Vol. 73, No. 9
0019-9567/05/$08.00+0 doi:10.1128/IAI.73.9.6119-6126.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Departments of Obstetrics & Gynecology,1 Pathology, University of Texas Medical Branch, 301 University Blvd., Galveston, Texas 77555-1062,2 Department of Microbiology, Technical University of Gdansk, ul. G. Narutowicza 11/12, 80-952 Gdansk, Poland,3 Department of Biochemistry, Oxford University, Oxford OX1 2QY, United Kingdom,4 Imperial College, London SW 2AZ, United Kingdom,5 Department of Clinical Microbiology, Medical School of Gdansk, Gdansk 80-952, Poland6
Received 21 June 2004/ Returned for modification 7 September 2004/ Accepted 5 April 2005
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The growing superfamily of Dr adhesins includes Dr hemagglutinin, Dr-II, Afa-I, -II, -III, and -IV, F1845, and several others of human and animal origin (20). Members of the Dr family recognize as their receptor the Dr(a) blood group antigen that was mapped to decay-accelerating factor (DAF) (19). DAF (CD55) is a complement-regulatory protein that protects tissues from autologous complement-mediated damage. Dr+ E. coli has been the first example of a pathogen recognizing CD55 (17, 19). Recent studies have shown that echoviruses and coxsackieviruses bind to CD55 (2, 27). Closely related to DAF, CD46 acts as a receptor for Neisseria gonorrhoeae, Neisseria meningitidis, Helicobacter pylori, and Streptococcus pyogenes (13).
The DAF SCR-3 loop, the region between amino acids S155 and S165, is a critical binding site for Dr fimbriae (10, 17, 18). The structural adhesin (e.g., DraE), which forms the fimbrial polymer, determines the receptor-binding specificity of Dr adhesins (17). The interaction of E. coli bearing Dr adhesin with DAF leads to bacterial internalization (8). Mutation of the Dr operon abolishes bacterial attachment or invasion in cell lines and chronic nephritis in mice (7, 8). The receptor-binding site of the DraE fimbrial subunit appears to be located in the amino-terminal half, and amino acids 63 to 81 appear to be involved in DAF recognition (3, 29, 30).
The dra operon also encodes the DraD protein (adjacent to DraE), which is postulated to be an invasin (6). Recent studies of AfaD, a homolog of DraD, suggest that ß1 integrin may be involved in AfaD internalization (23).
We investigated hydrophilic domain II of the Dr adhesin and show here that the binding and invasion phenotypes of Dr fimbriae may be separated.
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Plasmids.
Plasmid pCC90 contains the Dr operon with a deletion of regulatory genes upstream of draB (3) which results in a constant expression of Dr fimbriae. Plasmid pCC90-
Sac does not express Dr adhesin due to a 1.1-kb deletion that includes the 3' end of draD and the 5' end of draE. Plasmid pCC90-D54Stop does not express Dr adhesin due to a stop codon at amino acid 54 in draE.
Site-directed mutagenesis. Site-directed mutagenesis was performed using a QuikChange site-directed mutagenesis kit according to the manufacturer's instructions (Stratagene, La Jolla, Calif.). Synthetic oligonucleotides were purchased from MWG Biotech Inc. (Highpoint, NC). Plasmid pCC90 was used as the template to introduce mutations into draE. Mutations were confirmed by DNA sequencing at the Protein Chemistry Core Laboratory (University of Texas Medical Branch, Galveston, Tex.). Sequencing was performed with PE Biosystem 373XL automated DNA sequencers using a Big Dye Terminator cycle sequencing kit with AmpliTaq DNA polymerase (Applied Biosystems, Foster City, Calif.).
Binding of Dr+ E. coli to DAF+ Chinese hamster ovary cells. E. coli cells expressing wild-type or mutant Dr fimbriae were added to culture plates containing DAF+ Chinese hamster ovary (CHO) cells grown on coverslips. After incubation for 2 h at 37°C, the cells were washed twice with phosphate-buffered saline (PBS), fixed with 3% paraformaldehyde, and stained with Giemsa stain. The E. coli cells bound to DAF+ CHO cells were observed under a microscope. The number of bacteria bound to DAF+ CHO cells was determined by counting 30 CHO cells, and the result was expressed as the number of bacteria per DAF+ CHO cell. The experiments were performed in duplicate (26).
Invasion of DAF+ CHO cells by Dr+ E. coli. Recombinant CHO cells expressing DAF or HeLa cells were seeded in 24-well plates. E. coli cells expressing wild-type or mutant Dr fimbriae were added at a concentration of 5 x 107/ml and incubated for 3 h at 37°C with 5% CO2. The cells were washed and incubated with gentamicin (200 µg/ml) for 1 h. The monolayer of cells was washed twice with F12 medium and lysed in 100 µl of lysis buffer (10 mM Tris-HCl, 1 mM EDTA, 2% Triton X-100, pH 7.5) as described previously (8). The intracellular bacteria were released with the lysis buffer, and aliquots were cultured overnight at 37°C with 5% CO2. Invasion was expressed as the number of CFU per well. Each experiment was performed in triplicate.
Purification of Dr adhesin from E. coli. Dr adhesin was purified from E. coli by a heat shock procedure followed by 40% (wt/vol) ammonium sulfate precipitation. The suspension was centrifuged, and the pellet was resuspended in 40% (wt/vol) ammonium sulfate and incubated overnight at 4°C. Following dialysis against PBS, the collected fractions were passed through a Sepharose 4B column, from which Dr adhesin was eluted in the void volume. The protein concentrations in eluted samples were evaluated with a BCA protein assay (Pierce, Rockford, Illinois).
Hemagglutination of red blood cells.
Purified Dr fimbriae at a concentration of 1 µg/ml or Dr+ E. coli was mixed with an equal volume of a 3% (vol/vol) suspension of human erythrocytes in PBS with 2% methyl-
-D-mannoside. Twofold dilutions of E. coli or purified fimbriae were rotated for 5 min on ice, and the hemagglutination titer was recorded (16).
SDS-PAGE and Western blot analysis. Purified fimbrial proteins were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) followed by Western blot analysis. SDS-PAGE was performed by the Laemmli method using a 15% polyacrylamide gel (12). Proteins were visualized by silver and Coomassie blue staining. Polyclonal rabbit antibodies to Dr adhesin were used for Western blot analysis to detect DraE, as described in our prior studies (22).
Coating of polystyrene beads with purified Dr adhesin. Polystyrene (latex) beads (Polybead 2.5% solid polystyrene beads with a 1.072-µm diameter; Polyscience Inc., Warrington, Pa.) were diluted 1:10, washed three times with 0.1 M borate buffer (pH 8.5), and resuspended in the same buffer. Purified Dr fimbrial protein or a Dr mutant (75 µg/ml) was diluted 1:10 in the suspension of polystyrene beads and mixed overnight at room temperature. Control beads were coated with bovine serum albumin (BSA, fraction V; Sigma Chemical Co., St. Louis, Mo.). The suspensions were spun down, resuspended in 1 ml of bovine serum albumin (10 mg/ml) in borate buffer, and incubated for 30 min at room temperature; the beads were then recovered by centrifugation. The procedure was repeated twice before the beads were finally resuspended in storage buffer (PBS containing 10 mg/ml bovine serum albumin and 5% glycerol) and stored at 4°C.
The biological activity of the fimbrial proteins and coated beads was confirmed by a hemagglutination assay. Each sample showed a similar hemagglutination titer, indicating the presence of similar concentrations of functional adhesin or its mutants on coated beads.
Adherence of beads coated with wild-type and mutated Dr fimbriae to HeLa and DAF+ CHO cells. Latex beads coated with purified wild-type Dr fimbrial proteins at equivalent concentrations were used to assess the binding of the DAF receptor accumulated at the sites of adherence. Subconfluent HeLa or DAF+ CHO cell monolayers grown on glass coverslips were washed twice with PBS and subsequently incubated for 1 h with a bead suspension diluted 1:1,000 in appropriate culture medium supplemented with 10% fetal bovine serum. DAF CHO cells were used as a negative control. Cells were washed with PBS and fixed for 10 min with 4% formaldehyde. Coverslips were incubated for 45 min with 50 µl of rabbit anti-Dr polyclonal antibody diluted 1:100 in PBS, followed by two washings with PBS. Cells were then incubated with 50 µl of goat anti-rabbit antibody conjugated with Texas Red (Molecular Probes, Inc., Eugene, Oreg.) diluted 1:100 in PBS. Coverslips were mounted on microscopic slides with Cytoseal (Stephens Scientific, Riverdale, NJ) and examined under a Nikon Eclipse 600 fluorescence microscope (Nikon Inc., Melville, NY).
Recruitment of DAF (CD55) molecules to HeLa cells at sites of adherence of latex beads coated with purified Dr fimbrial proteins. The recruitment assay was designed to assess the DAF density at the sites of adherent beads coated with wild-type and mutated Dr proteins. Subconfluent HeLa cell monolayers were incubated with beads and processed for staining as in the binding assay. Coverslips were incubated for 45 min with 50 µl of an anti-CD55 monoclonal antibody (CALTAG Laboratories, Burlingame, Calif.) diluted 1:50 in PBS, followed by two washings with PBS. Cells were then incubated with 50 µl of goat anti-mouse antibody conjugated with Cy3 (Jackson Immunoresearch Laboratories, Inc., West Grove, Pa.) diluted 1:100 in PBS. Coverslips were examined with a fluorescence microscope. Images were acquired with a charge-coupled device camera (CoolSnapcf; Roper Scientific, Inc., Trenton, NJ). The DAF staining associated with different types of beads was evaluated with Metamorph software, version 5.0r7 (Universal Imaging Corporation, Downingtown, Pa.). The images of 15 randomly selected beads from each slide were framed into identical regions of 30 by 30 pixels, which entirely comprised a bead with a surrounding area. This approach allowed us to measure the intensity of DAF staining and to characterize the average intensity of staining associated with beads coated with wild-type and mutated Dr fimbrial proteins.
Electron microscopy. For transmission electron microscopy, cells were fixed with Ito's fixative and embedded in Poly/Bed 812 resin (Polysciences, Inc., Warrington, Pa.). Ultrathin sections were cut on a Sorvall MT-6000 ultramicrotome (RMC, Tucson, Ariz.), stained with aqueous uranyl acetate and lead citrate, and examined in a Philips 201 transmission electron microscope (Philips Electron Optics, Eindhoven, The Netherlands) at 60 kV.
Modeling of DraE hydrophilic domain II. For the preparation of figures showing DraE, we used previously identified coordinates and X-ray crystallographic data for the DraE structure which are available in the Protein Data Bank (23a). Figures were prepared using the programs AESOP, PyMol, and TOPDRAW.
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FIG. 1. Sequence of amino acids (V28 to P40) in DraE domain II (in bold) targeted for alanine scanning mutagenesis. Amino acids replaced with alanine are pointed out with asterisks.
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To further study the binding of E. coli expressing mutant Dr adhesins to DAF, we performed a cell binding assay using recombinant CHO cells expressing human DAF. The results showed that mutants V28A, T31A, G33A, Q34A, T36A, and P40A bind DAF comparably to wild-type Dr adhesin but that mutant L35A does not (Fig. 2). Control Dr+ E. coli did not bind to DAF CHO cells, and Dr E. coli did not bind to DAF+ CHO cells. These results indicate that alanine substitutions for amino acids in hydrophilic domain II did not affect the binding of the Dr adhesin to DAF.
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FIG. 2. Binding of E. coli Dr mutants to DAF. White bars, DAF+ CHO cells; black bars, DAF CHO cells. Note that all mutants, with one exception, bound to DAF+ but not to DAF CHO cells. The binding of all mutants to SCR-1 and SCR-4 deletion mutants was similar to that observed for the intact DAF, and conversely, the lack of binding to SCR-2 and SCR-3 mutants was identical to that in DAF-negative CHO cells (identical binding was not depicted for clarity).
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FIG. 3. Visualization of Dr adhesins expressed by recombinant Escherichia coli/pCC90 and its mutants by Coomassie blue staining (A) and Western blotting with rabbit anti-Dr serum (B). All preparations were isolated from the same amount of bacteria (optical density at 600 nm, 0.6). Note that Dr and Dr mutant proteins migrate with the 14.3-kDa marker. Lanes: M, molecular weight markers; 1, E. coli/pCC90; 2, V28A; 3, T31A; 4, G33A; 5, Q34A; 6, L35A; 7, T36A; 8, P40A; 9, D54Stop; 10, SacI.
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Alanine scanning mutagenesis of amino acids in the domain from V28 to P40 impedes cell invasion by Dr+ E. coli. The E. coli mutants were tested on two types of cells, namely, recombinant DAF+ CHO and HeLa cells, which express abundant DAF. The data show that mutation of the targeted amino acids in Dr adhesin hinders the invasion of recombinant DAF+ CHO cells by Dr+ E. coli (Fig. 4). E. coli expressing wild-type Dr adhesin invaded cells at rates of 2,500 to 4,000 CFU/well; with the V28A, G33A, and Q34A mutants, however, invasion was reduced 25- to 40-fold. Invasion was totally abolished in the T31A, T36A, and P40A mutants. The background level of invasion of T31, T36, and P40 mutants was similar to that observed with fimbria-negative control Dr E. coli.
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FIG. 4. Mutation of target amino acids of domain II hinders invasion. (A) Invasion of DAF+ CHO cells (white bars) and DAF CHO cells (black bars). (B) Invasion of HeLa cells.
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With HeLa cells (Fig. 4B), invasion was reduced 14-fold for the V28A, G33A, Q34A, and P40A mutants and was totally abolished for the T31A and T36A mutants. Thus, the cell invasion patterns were generally similar for CHO and HeLa cell types. In the control experiments, there was no invasion of DAF CHO cells, and Dr E. coli did not invade DAF+ CHO cells or HeLa cells. The results indicate that amino acids V28, T31, G33, Q34, T36, and P40 play a role in cell invasion.
The contribution of each amino acid to the process of cell entry was further evaluated by electron microscopy. Dr+ E. coli strains with T31A, G33A (Fig. 5B and C), and P40A mutations bound to the surfaces of DAF+ CHO cells in large numbers, but there was no evidence of cell invasion. Conversely, mutant V28A showed bacteria that appeared to be in the early stages of invaginating the cell membrane. Mutant Q34A was internalized in a loose vacuole containing more than one bacterium, with the morphological feature of phagolysosomal fusion (Fig. 5D). A similar pattern of internalization was found for mutant T36A. A vacuole containing E. coli/pCC90 with wild-type Dr fimbriae did not show morphological features of fusion with a lysosomal compartment (Fig. 5A).
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FIG. 5. Electron micrographs of cell invasion by E. coli expressing wild-type and mutant Dr adhesins. Panel A shows E. coli/pCC90 internalized in a tight vacuole (arrows). Panels B and C show E. coli mutants T31A and G33A (arrows) binding to but failing to invade DAF+ CHO cells. Panel D shows multiple bacteria of the mutant Q34A (arrows) internalized in a loose vacuole with the morphological features of phagolysosomal fusion (arrowheads). Panel E shows that E. coli/pCC90 does not bind or invade DAF CHO cells.
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Dr adhesin-coated beads were tested for the ability to invade DAF+ CHO cells. Beads coated with Dr adhesin and bound to DAF+ CHO cells were engulfed with the involvement of cellular microvilli and internalized into characteristic tight vacuoles with no phagolysosomal fusion (Fig. 6A to C). Both the number of DAF+ CHO cells with internalized beads and the number of beads inside each cell were reduced when the amino acids in domain II were mutated. For example, beads coated with proteins with Q34A (Fig. 6D) and T36A mutations poorly invaded the cells, and those that were internalized were confined to the vacuoles with features of lysosomal fusion. Latex beads coated with an equivalent concentration of BSA did not bind DAF+ CHO cells (Fig. 6E).
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FIG. 6. Electron micrographs showing invasion of DAF+ CHO cells by beads coated with wild-type and mutant Dr adhesins. Panels A, B, and C show binding, engulfment, and internalization, respectively, of latex beads (arrows) coated with wild-type adhesin. Inside the cell, the beads are in a tight vacuole with no features of fusion with a lysosome. Panel D shows beads coated with the mutant Dr adhesin Q34A (arrows) inside vacuoles containing vesicular material (arrowheads). This might suggest fusion with the phagolysosomal compartment. Panel E shows that latex beads coated with BSA did not bind DAF+ CHO. Note that this control experiment indicated the specificity of the binding assay.
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FIG. 7. Immunofluorescence staining of DAF on HeLa cells incubated with latex beads coated with purified Dr fimbrial protein and a mutated protein with a T31A substitution. (A) Intense fluorescence around beads coated with wild-type Dr protein (arrows) is interpreted as an increased accumulation of DAF molecules. (B) In contrast, mutant T31A displays low DAF accumulation manifested as weak fluorescence (arrows).
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FIG. 8. Densities of DAF staining at sites of adherence of latex beads coated with DraE or mutated DraE proteins. Asterisks indicate statistically significant differences (P < 0.05).
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FIG. 9. Atomic structure of DraE depicting hydrophilic domain II and mutations affecting invasion. Panel A is a ribbon representation of DraE, with "domain II" colored in orange. The position of chloramphenicol binding is shown in blue. Strands B, D, E, and G are labeled. Panel B is an additional view of DraE. The individual mutants affecting adhesin binding are shown as orange spheres (centered on the alpha carbon of the residue in question). Panel C is a topology diagram of the DraE subunits in polymeric form. In the top subunit, domain II is shown in orange and superimposed with chloramphenicol (blue). Panels A and B were rendered using PyMOL, and panel C was created using the program TOPDRAW.
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The exact mechanism(s) of invasiveness of E. coli bearing Dr and Afa adhesins is not yet understood. There are at least two working hypotheses addressing these issues. The original hypothesis proposed by Le Bouguenec et al. is that AfaE, a product of the gene afaE, is an adhesin and that AfaD is an invasin (11). The extended hypothesis, proposed by our group, is that DraE/AfaE possess properties of both adhesins and invasins. To test our hypothesis that DraE has invasive properties, we tested whether mutants in the hydrophilic domain II might adversely affect fimbria-receptor interactions and thus interfere with internalization. Our data are consistent with this hypothesis.
A recent collaboration between four groups led by S. Lea, S. Matthews, C. Le Bouguenec, and our group resulted in the solution of the crystal structure of DraE/AfaE (1). We have used the molecular model of DraE to localize hydrophilic domain II. Computer modeling showed that mutations affecting invasion were localized to the lower end of DraE loop B, which is 10 Å apart from the central region of DraE involved in DAF binding. The preliminary finding proposed in the collaborative work was that the DraE/AfaE fimbrial (filamentous) fiber may carry a tip protein, DraD (1). A structure analysis of the invasive epitope of DraE, however, does not appear to suggest that DraD interacts with DraE at this location. Therefore, we further lean towards our hypothesis that DraE is both an adhesin and an invasin. However, the questions of how DraE may interact with DraD and to what extent DraE may cooperate with DraD for invasion remain to be addressed.
The second part of the study was more subjective and involved the interpretation of electron microscopy and semiquantitative clustering data. Electron microscopy examination of the mutants revealed that they may fall into three distinct groups that presumably participate in the early, mid, and late events of invasion. Dr+ E. coli strains with the mutations T31A, G33A, and P40A were bound to the host cell surface in large numbers but showed no evidence of cell invasion, suggesting that T31, G33, and P40 may be involved in the early events of invasion. On the other hand, mutant V28A showed bacteria that were in the early stages of engulfment by cellular microvilli but were unable to enter the cell. One can speculate that V28 might be required for the completion of cell invasion/formation of a vacuole or just to enhance the invasion rather than facilitate it. Mutants Q34A and T36A demonstrated decreased invasion rates. An alternative explanation could be that these mutants had decreased intracellular survival. The second explanation was supported by the fact that the internalized mutants were found in vacuoles containing more than one bacterium and having morphological features of phagolysosomal fusion. Similar fusion was observed with latex beads coated with purified fimbrial protein mutants, suggesting the role of domain II in the invasion and/or survival process. Our previous work has shown that a DAF construct with a CD46 anchor replaces GPI anchor-directed bacteria in loose vacuoles, followed by lysosomal fusion (26). Mutations of amino acids in domain II of the fimbriae induced comparable changes.
An immunofluorescence study showed that mutation in domain II resulted in less accumulation of DAF molecules at the sites of adherence of beads coated with mutated proteins than that with the wild-type control. Although ligand-specific receptor clustering is known to trigger signaling cascades, it is unclear whether DAF clustering is required to initiate the entry of Dr+ E. coli into epithelial cells. Therefore, we are particularly careful about proposing a unified mechanism of entry mediated by Dr fimbriae. The invasion assay is based on counting intracellular bacteria remaining after gentamicin treatment; therefore, invasion at 3 h represents both the invasion process and intracellular killing. Further studies are necessary to precisely dissect these issues and compare them to the related processes observed with other bacterial species.
Certain microorganisms such as Mycobacterium spp. are able to avoid intracellular killing. This phenomenon is attributed to the failure of mycobacterial phagosomes to undergo fusion with lysosomes (33). It is also generally believed that microorganisms targeting the components of lipid rafts (such as GPI-anchored proteins) as their cellular receptors avoid fusion with a lysosomal compartment (24). Type 1 fimbriated E. coli strains that recognize GPI-anchored CD48 can avoid lysosomal fusion, but the type 1 fimbrial and CD48 receptor epitopes involved are not known (28). Overall, our data show that both hydrophilic domain II of Dr adhesin (this study) and the type of DAF receptor anchorage (28) are essential for the entry of E. coli and bacteria into the endocytic pathway, which appears to be morphologically different from the destructive phagolysosomal fusion pathway.
The model described here may be relevant to other members of the Dr superfamily and could also serve as a model for multiple bacteria, viruses, and parasites exploiting DAF and related tissue receptors. Further studies on the molecular mechanisms of internalization and direction of pathogens to a phagolysosomal environment may contribute to novel therapeutic strategies aimed at modulating the fate of intracellular microorganisms.
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