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Infection and Immunity, October 2006, p. 5595-5601, Vol. 74, No. 10
0019-9567/06/$08.00+0 doi:10.1128/IAI.00135-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Divisions of Infectious Diseases,1 Gastroenterology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 212052
Received 26 January 2006/ Returned for modification 20 February 2006/ Accepted 26 June 2006
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Three highly related isotypes of BFT have been identified (termed BFT-1, BFT-2, and BFT-3) (4, 8, 12, 37). All BFTs appear to be structurally similar. BFT is synthesized as a 44-kDa precursor (397 amino acid residues) containing the following three consecutive peptide domains: (i) a presignal sequence (18 amino acid residues), (ii) a propeptide (193 amino acid residues), and (iii) a mature protein (186 amino acid residues) (8, 14). The 44-kDa precursor protein is processed to a 20-kDa mature BFT that is secreted into the culture supernatant.
Based on sequence analysis, BFT is predicted to be a member of the metzincin superfamily of zinc-dependent metalloprotease enzymes (19). Members of this superfamily contain an elongated zinc-binding metalloprotease motif (HEXXHXXGXXH) and present a perfectly superimposable methionine residue close to the zinc-binding motif. The 20-kDa mature BFT contains the zinc-binding metalloprotease motif (H348 to H358) and a methionine residue 7 amino acids C terminal to the zinc-binding metalloprotease motif, typical of the matrix metalloprotease (MMP) family (20). In recent studies, we have demonstrated that a series of single point mutations in the zinc-binding metalloprotease motif do not affect BFT processing but do reduce or eliminate BFT biologic activity in vitro (5). Recently, studies have also shown that the C-terminal regions of some bacterial MMPs are necessary for substrate binding, as shown by loss of activity after deletion of the C-terminal region (17, 18, 34). In this study, we evaluated the role of the C-terminal region in BFT activity, processing, and secretion.
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TABLE 1. Bacterial strains and plasmids used in this study
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Activity of BFT on HT29/C1 cells. BFT activity on HT29/C1 cells was determined at 3 and 24 h as described previously (21, 35). Cell-free culture supernatants and whole-cell lysate preparations were tested for toxin activity at dilutions ranging from 1/4 to 1/25,600. For some experiments, cell-free culture supernatants containing the BFT-C8, BFT-C9, BFT-C11, and BFT-C18 mutants were concentrated 10-fold using Ultrafree-MC filters (Millipore, Bedford, MA) prior to testing on HT29/C1 cells. The endpoint titer was defined as the inverse of the maximum dilution with ability to alter the morphology of HT29/C1 cells. Purified BFT from wild-type ETBF strain 86-5443-2-2 and/or cell-free culture supernatants of ETBF strain 86-5443-2-2 were used as positive controls. The negative controls included medium alone and crude supernatant filtrates of nontoxigenic B. fragilis (NTBF) strain NCTC 9343 containing plasmid pFD340.
E-cadherin cleavage. The effect of wild-type and mutant BFTs on E-cadherin was determined as described by Wu et al. (38). Briefly, HT29/C1 cells were treated with cell-free culture supernatants containing wild-type or mutant BFT. After 3 h, HT29/C1 cells were removed from plastic dishes by scraping them into phosphate-buffered saline with 2% sodium dodecyl sulfate and analyzed by Western blotting using antibodies against the extracellular domain of E-cadherin (Decma antibody; Sigma, St. Louis, MO). The positive control was HT29/C1 cells treated with 100 ng/ml of purified BFT from ETBF strain 86-5443-2-2, and the negative controls included HT29/C1 cells treated with cell-free culture supernatants of NCTC 9343 containing vector pFD340 and medium alone. Western blot analysis of the housekeeping protein actin was used to internally control variations in protein loading.
IL-8 secretion. Subconfluent HT29/C1 cells in eight-well slides were treated with cell-free culture supernatants of NCTC 9343 expressing wild-type or mutant BFT at a dilution of 1/4 (final volume, 400 µl) and tested for IL-8 secretion after 16 h of incubation. The positive and negative controls were the controls described for the E-cadherin analysis above. The levels of IL-8 in HT29/C1 cell culture supernatants were determined by an enzyme-linked immunosorbent assay (ELISA) (PharMingen, San Diego, CA) (39). The ELISA capture antibody (purified mouse anti-human IL-8 monoclonal antibody), the ELISA detection antibody (biotinylated mouse anti-human IL-8 monoclonal antibody), and standards (recombinant human IL-8) were purchased from BD PharMingen (San Diego, CA). Samples were analyzed with reference to a standard curve for IL-8 concentrations ranging from 31.25 to 2,000 pg/ml.
Mutation of the C-terminal region. C-terminal 2, 4, 7, 8, 9, 11, and 18 truncation mutants and a mutant with a point mutation in the fourth amino acid of the BFT C terminus (BFT-A394E) were created by site-directed mutagenesis according to the instructions of the manufacturer (Quikchange site-directed mutagenesis kit; Stratagene Inc., La Jolla, CA). To create the mutations, pFD340::P-bft was amplified by PCR using complementary primers described in Table 2. Mutated pFD340::P-bft was mobilized into NTBF strain NCTC 9343 using the helper plasmid pRK231 as described previously (6). The point mutations were confirmed by DNA sequence analysis.
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TABLE 2. Primers used in this study
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PCR conditions. PCRs using primers PbftF and P4 and primers 16S1 and 16S2 were performed with Taq polymerase (1.5 U) in 50-µl mixtures containing plasmid DNA as the template (5 to 10 ng), primers (25 pmol), deoxynucleoside triphosphates (200 µM), and MgCl2 (1.5 mM). For amplification we used a hot start (94°C for 1 min), followed by denaturation at 94°C for 1 min, annealing at 66°C for 2 min, and extension at 72°C for 1 min. The amplification cycle was repeated 29 times. The amplification was followed by a final extension at 72°C for 5 min. The PCRs used to create the truncation mutants or to substitute amino acid residues in the C-terminal region were performed using Pfu Turbo DNA polymerase (2.5 U) in 50-µl mixtures according to the instructions of the manufacturer (Quikchange site-directed mutagenesis kit; Stratagene Inc., La Jolla, CA).
BFT secondary structure analysis. The secondary structure of wild-type and mutant BFTs was determined by using the DNAMAN version 5.2.9 sequence analysis software (Lynnon BioSoft, Quebec, Canada).
Statistical analysis. Data were analyzed by the Student t test (paired); a P value of <0.05 was considered statistically significant.
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700-bp upstream promoter region in NTBF strain NCTC 9343 using pFD340 resulted in secretion of quantities of active BFT that exceeded the quantities secreted by the highly toxigenic wild-type ETBF strain 86-5443-2-2 (7). Western blot analysis of cell-free culture supernatants of strain NCTC 9343 expressing mutants BFT-C2, BFT-C4, BFT-A394E, and BFT-C7 revealed the presence of amounts of the 20-kDa mature BFT similar to the amounts of wild-type P-BFT, indicating that the mutations did not affect BFT processing or secretion (Fig. 1A and B); however, the amounts of the 20-kDa mature BFT protein in cell-free culture supernatants of strain NCTC 9343 expressing mutants BFT-C8, BFT-C9, and BFT-C18 were significantly lower than the amounts of wild-type P-BFT (Fig. 1A and B), and BFT-C11 was not detected (Fig. 1A). Western blot analysis of whole-cell lysate preparations revealed the presence of the 44-kDa unprocessed and 20-kDa mature BFT in preparations of strain NCTC 9343 expressing wild-type P-BFT, as well as mutants BFT-C2, BFT-C4, BFT-A394-E, BFT-C7, and BFT-C8 (Fig. 1C). However, similar to the cell-free culture supernatants, the 44-kDa unprocessed and 20-kDa mature BFT were not identified in preparations of NCTC 9343 expressing BFT-C11, and smaller amounts were detected in preparations of NCTC 9343 expressing mutants BFT-C9 and BFT-C18, indicating that the smaller amounts of processed BFT identified in the cell-free culture supernatants containing these mutants were not due to a processing defect or accumulation of the toxin inside the cell (secretion defect). RT-PCR analysis showed that all C-terminal bft mutants were expressed similar to wild-type bft (Fig. 2), suggesting that the absence of BFT-C11 and the smaller amounts of BFT-C8, BFT-C9, and BFT-C18 in the cell-free culture supernatants were not due to a transcription defect. |
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TABLE 3. Predicted secondary structures of wild-type BFT (P-BFT) and BFTs with mutations in the C-terminal regiona
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FIG. 1. (A) Immunoblot analysis of cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFTs. (B) Concentrations of secreted BFTs in cell-free culture supernatants determined by quantitative Western blotting as described in Materials and Methods. The BFT concentrations (ng/ml of cell-free culture supernatant) shown are the means ± standard deviations of four Western blot assays. The P value was <0.05 for comparisons of the P-BFT concentration and the BFT-C8, BFT-C9, BFT-C11, and BFT-C18 concentrations. Purified BFT (25 ng) was included in each Western blot assay. (C) Immunoblot analysis of 10-fold-concentrated whole-cell lysate preparations of NCTC 9343 expressing wild-type P-BFT and mutant BFTs. Similar amounts (50 µg) of whole-cell lysate preparations were analyzed. The results are the results of a single experiment that was representative of four experiments.
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FIG. 2. RT-PCR analysis of bft mRNA synthesis in NCTC 9343 expressing wild-type P-BFT and mutant BFTs. pFD340 is the vector control. Synthesis of 16S rRNA was used as an internal control. The results are the results of a single experiment that was representative of four experiments.
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TABLE 4. Biologic activity on HT29/C1 cells of B. fragilis strain NCTC 9343 expressing wild-type and mutant BFTs
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Because BFT treatment of HT29/C1 cells stimulates cleavage of E-cadherin, we next determined whether mutation of the C terminus affects cleavage of E-cadherin. Consistent with the HT29/C1 cell biologic activity (Table 4), intact 120-kDa E-cadherin was detected in HT29/C1 cells treated with cell-free culture supernatants of NCTC 9343 expressing BFT-C7 and 10-fold-concentrated cell-free culture supernatants containing BFT-C8, BFT-C9, BFT-C11, and BFT-C18, and nearly complete cleavage of E-cadherin was observed in cells treated with cell-free culture supernatants containing wild-type P-BFT and cell-free culture supernatants of NCTC 9343 expressing mutant BFT-A394E (Fig. 3A). In contrast, E-cadherin cleavage was induced by mutants BFT-C2 and BFT-C4 (Fig. 3B), but the cleavage less than that observed with wild-type P-BFT, consistent with the reduced HT29/C1 biologic activity of the culture supernatants containing these mutants (Table 4 and Fig. 3).
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FIG. 3. (A and B) Cleavage of E-cadherin in HT29/C1 cells after 3 h of treatment with cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFTs. Untreated HT29/C1 cells were included as a negative control. Similar amounts of HT29/C1 cell lysate preparations (10 µg) were analyzed by Western blotting using antibodies against E-cadherin (Decma antibody; Sigma) as described in Materials and Methods. The housekeeping protein actin revealed approximately equal amounts of protein in all lanes. The results are the results of a single experiment that was representative of four experiments.
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FIG. 4. IL-8 secretion by HT29/C1 cells stimulated with supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFTs. HT29/C1 cells were stimulated for 16 h. The results shown are the means ± standard errors of four experiments. The P value is 0.03 for a comparison of cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFT-C2; the P value is 0.06 for a comparison of cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFT-C4; the P value is 0.3 for a comparison of cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutant BFT-A394E; and the P value is <0.05 for comparisons of cell-free culture supernatants of NCTC 9343 expressing wild-type P-BFT and mutants BFT-C7, BFT-C8, BFT-C9, BFT-C11, and BFT-C18 or NCTC 9343 containing pFD340.
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Interestingly, the results show that deletion of two C-terminal amino acid residues is sufficient to reduce the activity of BFT on HT29/C1 cells and that deletion of eight amino acid residues eliminates all BFT biologic activity on HT29/C1 cells. Western blot data showed that C-terminal truncated (
8 amino acids) and punctate mutants were processed to a mature 20-kDa molecule, indicating that the loss of biologic activity of these BFT mutants is not due to a defect in BFT processing (Fig. 1B). Previously, we demonstrated that mutations of the zinc-binding metalloprotease motif that reduce or eliminate BFT activity do not affect BFT processing (5), suggesting that processing of the protein toxin does not require an active BFT catalytic domain. Thus, processing of BFT is hypothesized to occur via other intracellular B. fragilis proteases and not by an autoproteolysis mechanism. Smaller amounts of the 44-kDa unprocessed and/or 20-kDa mature BFT were detected by Western blotting in mutants BFT-C8, BFT-C9, BFT-C11, and BFT-C18 compared to wild-type BFT (Fig. 1A and B). Given that expression of all mutant proteins is similar to expression of the recombinant wild-type BFT (P-BFT) (Fig. 2), deletion of eight or more amino acid residues of the BFT C-terminal region may alter the BFT structure, affecting the solubility and stability of this protein. Alternatively, the mutations may affect posttranscriptional events of the protein.
Our results showing either similar levels of reduced biologic HT29/C1 activity or no biologic activity in cell-free culture supernatants and whole-cell lysate preparations of B. fragilis expressing mutant BFTs (Table 4) indicate that mutation of the C terminus does not affect BFT secretion. Secondary structural analysis of wild-type and mutant BFTs predicted that the deletion or punctate mutations of the BFT C terminus evaluated result in modest structural changes in the C-terminal region of BFT (Table 3) but do not affect the structure of the catalytic zinc-binding motif (data not shown). Analysis of the three-dimensional structures of representative members of the MMP family showed, despite low sequence similarity, comparable overall topologies, suggesting that the conserved structures are important for protein activity (9). In addition to a consensus
-helix located in the first half of the elongated zinc-binding metalloprotease motif (termed the active-site helix) and an invariant methionine-containing Met turn beneath the catalytic site, MMPs contain a C-terminal helix in the lower subdomain (9). Secondary structural analysis of BFT predicts the presence of a C-terminal helix domain (Table 3); however, even though C-terminal deletion of 2 or 4 amino acids is not predicted to affect the structure of this helix domain, supernatants containing such mutants exhibited significantly reduced biologic activity on HT29/C1 cells. Similarly, the reduced biologic activity observed with BFT-C2 or BFT-C4 cannot be ascribed to induction of a distal C-terminal coil (amino acids 391 to 393 [Table 3]) motif in BFT as BFT-A394E exhibited full HT29/C1 biologic activity despite a predicted elongated coil motif in the C terminus (Table 3). This suggests that the reduced biologic activity of the C-terminal mutants is attributable to the truncation of the amino acids rather than to changes in the BFT secondary structure. Additional studies to define BFT structure are necessary to precisely identify how the terminal 4 amino acids contribute to BFT biologic activity.
Mammalian MMPs are larger than bacterial MMPs and contain various arrangements of substrate-binding domains, including fibronectin-like and hemopexin domains, in their C-terminal regions (26). Recently, studies have shown that, similar to the C terminus of mammalian MMPs, the C-terminal regions of some bacterial MMPs contain a collagen-binding domain, as shown by loss of collagenase activity after deletion of the C-terminal region (17, 18, 34). However, the substrate-binding domains of bacterial MMPs are much smaller than the substrate-binding domains of mammalian MMPs. It has been demonstrated that
33 amino acids of the Vibrio mimicus metalloprotease C-terminal domain or
100 amino acids of the Clostridium histolyticum metalloprotease C-terminal domain are necessary for substrate binding, compared to
200 amino acid residues for the hemopexin-like domain in mammalian MMPs (17, 36). Thus, we hypothesize that the C-terminal amino acid residues are responsible for binding to the BFT substrate. Although BFT stimulates E-cadherin cleavage on intact epithelial cells, in vitro cleavage of isolated E-cadherin does not occur (38). Furthermore, our data suggest that the metalloprotease activity of BFT is required for its initial interaction with a specific epithelial cell receptor that is not E-cadherin and remains to be identified (S. Wu and C. L. Sears, submitted for publication). Additional work is required to characterize the initial protein-protein interaction of BFT with intestinal epithelial cells so that the role of the C-terminal region in BFT substrate binding can be tested.
Together, the results presented here and our prior work (5) suggest that even modest changes in the amino acid structure of BFT result in substantial or complete loss of biologic activity. Consistent with these data, a 10-amino-acid N-terminal deletion mutant (BFT-
M241-V251) that we constructed was also biologically inactive on HT29/C1 cells despite a secondary structural analysis showing only scattered point changes in the BFT conformation (Franco and Sears, unpublished data). Studies to define the three-dimensional structure of BFT and its initial cellular interaction are required to definitively understand the structure-function properties of BFT.
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