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Departments of Medicine,1 Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232,3 Veterans Affairs Tennessee Valley Healthcare System, Nashville, Tennessee,4 Department of Molecular Physiology and Biological Physics, University of Virginia Health Sciences Center, Charlottesville, Virginia 229082
Received 8 June 2006/ Returned for modification 12 July 2006/ Accepted 22 August 2006
| ABSTRACT |
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| INTRODUCTION |
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One of the most striking activities of VacA is its capacity to induce the formation of large cytoplasmic vacuoles in cultured cells (7, 27). VacA also produces an assortment of other effects, including depolarization of the cellular membrane potential, apoptosis, detachment of cells from the basement membrane, interference with the process of antigen presentation, and activation of mitogen-activated protein kinases (6, 32, 36). VacA interferes with the activation and proliferation of T cells (3, 19, 46), which might be a factor that enables H. pylori to resist clearance by host immune defenses.
VacA-induced cell vacuolation requires binding of VacA to the surface of cells, internalization of VacA into cells, and insertion of VacA into membranes to form anion-selective membrane channels (6, 18, 32). VacA channels are formed in the plasma membrane of cells and also may be present in the membranes of endocytic vesicles (47, 49). One model proposes that entry of Cl into vesicle compartments through the VacA channel is accompanied by increased pumping of protons by the vacuolar ATPase, influx of weak bases (such as ammonium ions), and accumulation of H2O, thereby driving endosome swelling (1, 37, 49). It has been suggested that VacA mimics the electrophysiological behavior of host chloride channels (11). Indeed, overexpression of the endogenous chloride channel ClC-3 results in cytoplasmic vacuolation that is remarkably similar to the vacuolation induced by the VacA toxin (28). Several other activities attributed to VacA also are associated with the capacity of the toxin to form anion-selective membrane channels (10, 23, 33, 46, 47, 57).
The VacA primary amino acid sequence is not closely related to that of any other known bacterial toxin, and the three-dimensional structure of VacA has not yet been determined. Partial proteolytic cleavage of the 88-kDa VacA protein with trypsin yields an amino-terminal p33 fragment (amino acids 1 to 312) and a carboxy-terminal p55 fragment (amino acids 313 to 821) (8, 17, 38, 48, 51). It has been suggested that these represent two domains of VacA. Both domains are required for toxin activity (50, 52, 61, 63).
In an effort to identify regions of VacA that are required for toxin activity, inactive mutant VacA proteins have been characterized (12, 30, 39, 55, 61-63). One approach for generating inactive VacA mutant proteins has involved introduction of mutations into the chromosomal vacA gene in H. pylori. Several mutant proteins generated by this approach contain large deletions that are expected to drastically alter VacA structure (55). Most of the other previously described inactive mutant VacA proteins contain mutations in a region near the amino terminus (amino acids 1 to 32) (12, 30, 55, 62, 63), which is predicted to be highly hydrophobic and which plays a role in the formation of anion-selective channels (30, 55). The goals of the present study were to screen a library of mutant VacA toxins expressed in Escherichia coli and identify mutant proteins that lack vacuolating activity.
| MATERIALS AND METHODS |
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Expression of VacA proteins in E. coli. Expression of rVacA and preparation of soluble protein extracts was performed with 96-well deep-well plates as described previously (31). ER2566 transformants were grown at 25°C overnight with shaking in Terrific broth (TB; per liter, 12 g tryptone, 24 g yeast extract, 4 ml glycerol, 2.31 g KH2PO4, 12.54 g K2HPO4) supplemented with 25 µg/ml kanamycin (TB + Kan). Overnight cultures were diluted 1:100 in fresh TB + Kan and grown at 25°C for 4 h (to an optical density at 600 nm of 0.2 to 0.4). IPTG then was added to a final concentration of 250 µM, and growth was continued for 20 h at 25°C. IPTG-induced cultures were pelleted, washed in 0.9% NaCl, and resuspended in a solution (25 µl/ml of starting culture) that contained 10 mM Tris (pH 7.5), 100 mM NaCl, 1 mM EDTA, protease inhibitors (Complete mini; Roche), and 20,000 U/ml ReadyLyse lysozyme (Epicenter). Bacteria were incubated at room temperature for 15 min with periodic mixing, after which a solution (75 µl/ml of starting culture) containing 50 mM Tris (pH 8.0), 2.67 mM MgCl2, and 67 U/ml Benzonase nuclease (Novagen) was added. Samples were mixed briefly and subjected to four successive rounds of freezing (in a dry-ice-methanol bath) and thawing at 37°C. The insoluble debris was pelleted, and the supernatants were then tested immediately in a cell culture assay.
Cell culture methodology. Vacuolating activity in E. coli extracts was examined as described previously (31). Aliquots from each extract were added to the medium overlying HeLa cells. For these assays, HeLa cells were incubated in serum-free Eagle's medium supplemented with 10 mM ammonium chloride. Vacuolation of HeLa cells was assessed by microscopic inspection. Mutants that did not exhibit vacuolating activity based on microscopic observation were examined in more detail. All mutant proteins identified in the initial screen as lacking cytotoxic activity were immunoblotted with anti-VacA antiserum no. 958 (43) to assess levels of VacA expression and to assess the sizes of the mutant VacA proteins. Mutants expressing VacA proteins that were substantially degraded, truncated, insoluble, or expressed at markedly reduced levels relative to a wild-type control were not studied further. Mutants that expressed a form of VacA that appeared to be full length and present in a quantity similar to that of the wild-type control were retested. New cultures of these mutants were grown, toxin concentrations were normalized based on an antibody capture enzyme-linked immunosorbent assay (ELISA) (54), and equal amounts of wild-type or mutant rVacA proteins were added in triplicate to HeLa cell monolayers.
Introduction of vacA mutations into H. pylori and purification of VacA from H. pylori. Several mutations were introduced into the chromosomal vacA gene of H. pylori 60190, either with an upstream chloramphenicol resistance cassette as a selectable marker (for V21L and S25L) or by a sacB-based mutagenesis approach (4, 30, 33, 55). H. pylori strains were grown in sulfite-free brucella broth containing activated charcoal, and mutant forms of VacA were purified in an oligomeric form from H. pylori culture supernatants (8). In brief, broth culture supernatant proteins from each mutant H. pylori strain were concentrated by precipitation with a 50% saturated solution of ammonium sulfate, and the VacA proteins from each strain were isolated by fractionation with a Superose 16/50 gel filtration column. Purified VacA preparations were routinely acid activated before the addition of VacA to cell culture wells or planar lipid bilayer chambers as described previously (8, 13).
ELISA to quantify binding of VacA to cells. VacA proteins (2.5 µg/ml) purified from H. pylori were incubated with HeLa cell monolayers at 4°C for 1 h. Monolayers were then washed to remove unbound toxin and fixed in 50% acetone-50% methanol. Bound VacA was then detected by ELISA, with rabbit anti-VacA serum no. 958 and horseradish peroxidase-labeled anti-rabbit immunoglobulin G (43).
Confocal-microscopy methodology. Internalization of VacA mutant proteins into HeLa cells was analyzed by confocal microscopy with anti-VacA serum no. 958 as described previously (43, 50).
Analysis of protein dimerization with a TOXCAT model system. The TOXCAT system was developed by Russ and Engelman to study transmembrane helix-helix associations in a natural membrane environment (41). In this system, a putative transmembrane sequence (TM) is cloned between a sequence encoding the transcription activator domain of Vibrio cholerae ToxR and a sequence encoding the periplasmic domain of the Escherichia coli maltose binding protein (MBP). Dimerization of the fusion protein is determined based on expression of the cat gene, which is under the control of the dimerization-dependent transcription activator ToxR (13). E. coli strains expressing ToxR-TM-MBP fusion proteins that dimerize are resistant to chloramphenicol, whereas strains expressing fusion proteins that lack a dimerization sequence are sensitive to chloramphenicol. The chloramphenicol acetyltransferase (CAT) enzyme was measured by an antigen capture ELISA (Roche) according to the manufacturer's instructions. Plasmids pccVacA-wt and pccVacA-G14A have been described previously (29), and plasmids containing additional mutations in VacA were constructed by a similar approach.
Planar lipid bilayer methodology.
Planar lipid bilayers composed of egg phosphatidylcholine-dioleoylphosphatidylserine-cholesterol (55:15:30 mol%) dissolved in n-decane, were prepared as described previously (10, 30, 33, 55). Purified, acid-activated VacA proteins (30 nM,
2.7 µg/ml) were added to the lipid bilayers in buffers as described in Table 1. The time required to produce a current of 100 pA at 50 mV was then determined. Membrane currents were measured as described previously (10, 30, 33, 55). The potential is indicated relative to the cis side, defined as the chamber to which the protein was added. Permeability ratios were determined from the Goldman-Hodgkin-Katz equation, after the membrane voltage for zero current (reversal potential) in asymmetric salt concentrations was measured.
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Analysis of membrane potential of AZ-521 cells. Experiments to analyze the membrane potential of AZ-521 cells were performed as described previously, with minor modifications (43, 47). Briefly, cells were detached with Accutase (Innovative Cell Technologies), washed, and then incubated with bis-(3-propyl-5-oxoisoxazol-4-yl)pentamethine oxonol (oxonol VI; Molecular Probes) at a final concentration of 2.5 µM for 30 min at 37°C. A cell suspension (2 ml) was placed in a stirred quartz cuvette at 37°C in a Perkin-Elmer Life Sciences LS50B fluorimeter. After stabilization of the fluorescence signal (excitation, 585 nm; emission, 645 nm), acid-activated VacA toxins (final concentration, 10 µg/ml) were added to the cells and changes in fluorescence were monitored. Depolarization causes a potential-dependent change in the cytoplasmic-transmembrane distribution of the fluorophore, which is accompanied by a change in fluorescence (2).
| RESULTS |
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To examine the vacuolating activity of the mutant VacA proteins, an aliquot from the total cell lysate of each of the 4,249 samples was added to the medium overlying HeLa cells. Vacuolation of HeLa cells was assessed by microscopic inspection. Mutants that did not exhibit vacuolating activity based on microscopic observation were examined in more detail. All mutant proteins identified in the initial screen as lacking cytotoxic activity were immunoblotted with an anti-VacA antiserum to assess levels of VacA expression and the sizes of the mutant VacA proteins (31, 43). Mutants expressing VacA proteins that were substantially degraded, truncated, insoluble, or expressed at markedly reduced levels relative to a wild-type control were not studied further. Mutants that expressed VacA proteins that appeared to be full length and present in a quantity similar to that of the wild-type control were retested. New cultures of these mutants were grown, toxin concentrations were normalized based on an antibody capture ELISA, and equal amounts of wild-type or mutant rVacA proteins were added in triplicate to HeLa cell monolayers. Based on this analysis, 10 mutants were identified that failed to induce vacuolation (Fig. 1).
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Membrane depolarization. VacA is known to form anion-selective channels in the plasma membrane of cells, and the formation of these channels results in partial depolarization of the resting membrane potential (33, 43, 47). To determine whether the VacA-V21L, -S25L, -G121R, and -S246L mutant proteins were defective in the ability to cause membrane depolarization, we used bis-(3-propyl-5-oxoisoxazol-4-yl)pentamethine oxonol as a probe to monitor the membrane potential of AZ521 cells. Consistent with previously published results (33, 43, 47), we found that the addition of acid-activated wild-type VacA rapidly altered the resting membrane potential of AZ521 cells, whereas the resting membrane potential was not altered by acid-activated VacA-G18A (Fig. 7) (33). Similarly, the resting membrane potential of AZ521 cells was not altered by either VacA-V21L or VacA-S25L. Addition of VacA-G121R or VacA-S246L to cells resulted in depolarization of the resting membrane potential, consistent with the bilayer assays demonstrating the channel-forming capacity of these mutants. Similar results were obtained with HeLa cells (data not shown). These are the first examples of mutant VacA proteins that retain the capacity to cause membrane depolarization yet fail to cause cell vacuolation.
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| DISCUSSION |
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Two of the 10 mutations identified in the present study (T152A and T210A) resulted in loss of vacuolating activity when the mutant proteins were expressed in E. coli but did not disrupt VacA activity when these mutant proteins were expressed in H. pylori. It is possible that factors present in H. pylori but absent from E. coli promote the proper folding of these mutant VacA proteins. For example, proper VacA folding may be promoted by H. pylori chaperone proteins or by the carboxy-terminal autotransporter domain of VacA that is present in H. pylori but absent from the rVacA proteins expressed in this study (16). Alternatively, it is possible that these two mutant proteins, when expressed in E. coli, underwent degradation to yield dominant-negative mutant forms of VacA, whereas such degradation did not occur when the proteins were expressed in H. pylori (55).
The fact that 6 of 10 mutations identified in the screen of mutant rVacA proteins map within the amino-terminal hydrophobic region (Fig. 2) underscores the importance of this region in VacA activity and indicates that the activity of this region can be readily ablated following mutation of individual amino acid residues (33, 62). As shown in this study, the V21L and S25L VacA mutant proteins exhibit characteristics similar to those of previously characterized P9A, G14A, and G18A mutant proteins (33, 62). These similarities include defects in the ability to induce cytoplasmic vacuolation, defects in the ability to induce depolarization of the plasma membrane, and defects in the ability to form anion-conductive channels in lipid bilayers. It has been hypothesized that the amino-terminal hydrophobic region of VacA directly inserts into membranes to form the VacA channel (24, 33). A theoretical structural model of the amino-terminal end of VacA proposes that this region consists of a hexameric helical bundle (24). In this model, amino acids such as G14 and G18 (which are critical for toxin activity and for the ability of this region of VacA to dimerize in the TOXCAT model of transmembrane protein interaction) (29, 33, 40) are positioned at the interface between adjacent helices. Conversely, this model proposes that amino acids such as P9, V21, and S25 (which are not required for protein dimerization in the TOXCAT model) are not positioned at the interface between adjacent helices.
The G121R and S246L mutations identified in this study represent the first single amino acid substitutions that reduce vacuolating cytotoxic activity and that map outside the amino-terminal hydrophobic region. In an effort to determine why these two mutant toxins were inactive, we analyzed five properties that are thought to be required for vacuolating toxin activity. The G121R and S246L mutant toxins were secreted by H. pylori and assembled into water-soluble oligomeric structures similar in size to those formed by wild-type VacA. The VacA-G121R and VacA-S246L mutant toxins bound to cells, were internalized by cells, and caused depolarization of intact cells. Both mutant proteins formed channels in planar lipid bilayers that exhibited an anion selectivity similar to that of channels formed by wild-type VacA. Thus, these two mutant toxins were not defective in any of the activities currently known to be required for vacuolating toxin activity. The retention of these functional properties suggests that these mutant toxins were not misfolded. Retention of membrane channel-forming activity by VacA-G121R and -S246L distinguishes these mutant proteins from those with mutations that map within the amino-terminal hydrophobic region. The defective vacuolating activity of VacA-G121R and -S246L mutant proteins, despite retention of membrane channel-forming activity, supports our conclusion from a previous study that channel formation is necessary but not sufficient for vacuolation (30).
Although the VacA-G121R and -S246L proteins formed channels at a rate similar to that of wild-type VacA at a negative membrane potential, these mutant proteins formed channels at a slightly faster rate than wild-type VacA at a positive membrane potential (Table 1). The plasma membrane of a cell typically has a transmembrane potential of approximately 70 mV (negative inside) as a consequence of K+, Na+, and Cl concentration gradients that are maintained by active transport processes (22). Based on this positive-outside membrane potential and assuming that VacA has a similar affinity for cells and lipid bilayers, it might be expected that VacA-G121R and -S246L mutant proteins would induce a more rapid depolarization of cells than wild-type VacA, yet this was not observed. It should be noted that the conditions for the planar lipid bilayer assays and the cell depolarization assays were not identical. Specifically, the bilayer studies were performed at a lower pH than the VacA channel likely experiences when it causes depolarization of cells. Moreover, the kinetics of cell depolarization were quite different from the rise in current observed in the bilayer assay, which suggests that there are substantial differences in the VacA-mediated events that are measured in the two assays.
The exact functional role of VacA residues G121 and S246 in vacuolating toxin activity remains unclear. It is possible that the relatively subtle differences in the channel activities of wild-type VacA compared to the VacA-G121R and -S246L mutant proteins might account for the failure of these mutant toxins to cause cell vacuolation. Alternatively, we speculate that the VacA-G121R and -S246L mutant toxins might be defective in the ability to interact with specific cellular target molecules or might be defective in one or more uncharacterized intracellular events required for cell vacuolation.
| ACKNOWLEDGMENTS |
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We thank Valerie Busler and Beverly Hosse for technical assistance.
| FOOTNOTES |
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Published ahead of print on 5 September 2006. ![]()
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