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Infection and Immunity, May 2006, p. 3071-3076, Vol. 74, No. 5
0019-9567/06/$08.00+0 doi:10.1128/IAI.74.5.3071-3076.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Microbiology, University of Illinois, Urbana, Illinois 61801Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001
Received 19 November 2005/ Returned for modification 24 December 2005/ Accepted 24 February 2006
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Heat-labile components from both H. pylori culture filtrates and HeLa extracts are required to promote the incorporation of 32P radiolabel from [32P-adenylate]NAD into trichloracetic acid (TCA)-precipitated material. To explore the possibility that H. pylori may produce an ADP-ribosyltransferase that is capable of modifying a eukaryotic target, we fractionated liquid cultures of H. pylori 26695 (ATCC no. 700392) and monolayers of human cervical cancer epithelial-like cells (HeLa cells; ATCC no. CCL-2). Bacterial culture filtrates were prepared by centrifugation (10,000 x g for 20 min at 4°C) of stationary-phase H. pylori liquid cultures that had been cultivated at 37°C for 72 h in bisulfite-/sulfite-free Brucella broth (10 g tryptone/liter, 10 g peptamine/liter, 5 g NaCl/liter, 1 g dextrose/liter, 2 g ß-cyclodextrin/liter) containing 5 µg vancomycin/ml under 10% CO2, 10% O2 and shaking at 200 rpm. The supernatants were concentrated by ammonium sulfate (90%) precipitation, and the ammonium sulfate pellets were resuspended and dialyzed into 50 mM Tris (pH 7.6) and 10 mM NaCl, followed by filter sterilization. HeLa cell extracts were prepared by incubating semiconfluent monolayers of cells with mammalian cell lysis buffer (MPER; Pierce, Rockford, IL), 50 mM Tris (pH 7.6), 10 mM NaCl, and a 1:100 dilution of protease inhibitor cocktail set III (AEBSF [4-{2-aminoethyl} benzenesulphonyl fluoride] [1 mM], aprotinin [0.8 µM], bestatin [50 µM], E-64 [15 µM], leupeptin [20 µM], pepstatin A [10 µM]; Calbiochem, San Diego, CA) at 25°C. After 5 min, the lysed cells were centrifuged at 20,000 x g at room temperature for 1 min, and the soluble extract was further clarified by filter sterilization.
H. pylori culture filtrates (1 mg protein/ml) and HeLa cell soluble extracts (1 mg protein/ml) were incubated together or separately at 25°C in the presence of either [32P-adenylate]NAD or [3H-nicotinamide]NAD (50 µM) in 50 mM Tris (pH 7.6), 10 mM NaCl. After 15 min, each reaction was terminated by spotting 20 µl of the mixture onto TCA (20%)-soaked, 1- by 1-in. Whatman no. 1 filter pads, followed by washing three times with ice-cold TCA (5%) and two times with ice-cold methanol to remove all soluble material, including soluble [32P-adenylate]NAD or [3H-nicotinamide]NAD. The dried pads were transferred to scintillation vials containing Scintiverse BD cocktail (Fisher, Hanover Park, IL), and the extent of NAD-derived radiolabel recovered with the TCA-precipitated material was scored by scintillation counting in either the 32P or the 3H channel using a Beckman LS 6500 scintillation counter. Because NAD is soluble, the recovery of radiolabel within the TCA-precipitated material indicates the association of some or all of the NAD molecule with macromolecules that are insoluble at an acidic pH.
These experiments revealed that reaction mixtures containing both the HeLa and H. pylori fractions yielded significant increases in 32P radiolabel associated with the TCA-precipitated material relative to reaction mixtures containing either fraction alone (Fig. 1A). Moreover, reactions with both the H. pylori and the HeLa fractions yielded significantly higher levels of 32P radiolabel relative to reaction mixtures in which either the H. pylori or the HeLa fraction had been pretreated at 90°C for 30 min (Fig. 1A). In preliminary studies, we found that, when incubated with H. pylori culture filtrate, only the soluble fraction from HeLa extracts (and not the insoluble membrane fractions) yielded a significant increase in 32P radiolabel associated with the TCA-precipitated material (data not shown). Finally, for reaction mixtures in which bisulfite-/sulfite-free Brucella growth medium was substituted for H. pylori culture filtrate, we did not detect significant differences (P = 0.4) in 32P radiolabel associated with the TCA-precipitated material relative to reactions containing HeLa extract alone (data not shown); these results rule out the possibility that a heat-labile contaminant from the H. pylori growth medium is alone responsible for promoting the incorporation of the NAD-derived 32P radiolabel into the TCA-precipitated material in the presence of HeLa extracts. Collectively, these results indicate that heat-labile, soluble components originating from both H. pylori and HeLa cells are required to promote the incorporation of NAD-derived 32P radiolabel into TCA-precipitated material.
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FIG. 1. Transfer of 32P radiolabel from [32P-adenylate]NAD to TCA-precipitated material is dependent on both H. pylori culture filtrate and HeLa cell extract. Combinations of fractions prepared from H. pylori 26695 and monolayers of HeLa cells were incubated in the presence of [32P-adenylate]NAD (50 µM; Amersham Pharmacia, Piscataway, NJ) and 50 mM Tris (pH 7.6), 10 mM NaCl at 25°C. After 15 min, 32P radiolabel transfer was scored by scintillation counting of 32P-radiolabeled, TCA-precipitated material. (A) The reaction mixtures consisted of H. pylori culture filtrates (1 mg protein/ml final in reaction), which was preincubated for 30 min at either 0°C or 90°C and followed by a 10-min incubation on ice, and the soluble fraction of HeLa cell lysates (1 mg protein/ml final in reaction), which was preincubated for 30 min at either 0°C or 90°C, followed by a 10-min incubation on ice, either alone or in combination. , absence of indicated substance; +, presence of indicated substance. (B) The reaction mixtures consisted of the soluble fraction of HeLa cell lysates (1 mg protein/ml final in reaction) with either of the H. pylori culture filtrates (1 mg protein/ml final in reaction), H. pylori bacterial lysates (1 mg protein/ml), or reaction buffer (50 mM Tris [pH 7.6], 10 mM NaCl). Each reaction was performed in triplicate, with the experiment performed at least three separate times. Error bars indicate standard deviations, and the P values were calculated from the Student t test relative to the reaction mixture containing both H. pylori culture filtrates and the soluble fraction of HeLa cell lysates. A P value of <0.05 was considered significant.
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Notably, in experiments where [3H-nicotinamide]NAD was substituted for [32P-adenylate]NAD, we were unable to detect a significant increase in 3H radiolabel associated with the TCA-precipitated material relative to controls lacking either H. pylori culture filtrate or HeLa extract (data not shown). Taken with the results described above, these data suggest that components within H. pylori culture filtrates and HeLa extracts together promote transfer of a phosphate-containing moiety from NAD to a protein acceptor with the concurrent release of nicotinamide; these observations are consistent with the idea of ADP ribosylation occurring within our reaction mixtures.
NAD-derived 32P radiolabel associated with TCA-precipitated material as a function of H. pylori and HeLa fractions. Although our results indicate that H. pylori culture filtrate and the soluble fraction from HeLa cell extract are both important for generating the TCA-precipitated, 32P-radiolabeled material, they did not reveal the source of the activity responsible for transfer of the 32P radiolabel, nor did they reveal the source of the acceptor for the 32P radiolabel. To further evaluate the potential sources of transfer activity and the 32P radiolabel acceptor, we evaluated the dependence of 32P radiolabel incorporation as a function of H. pylori and HeLa cell fractions. H. pylori culture filtrate was incubated with HeLa extract in the presence of 50 µM [32P-adenylate]NAD at 25°C. The extent of 32P radiolabel transfer after 15 min was scored by scintillation counting of the TCA-precipitated material within the reaction mixture. For these experiments, the concentration of either the H. pylori or the HeLa fraction varied, while the concentration of the other fraction was held constant. These experiments revealed that under reaction conditions not limiting for NAD, the amount of 32P radiolabel incorporated into TCA-precipitated material increased in direct proportion to the concentration of HeLa extract (Fig. 2A). In contrast, when H. pylori culture filtrate varied, the amount of 32P radiolabel increased initially but reached a maximum at concentrations greater than 1 mg protein/ml (Fig. 2B). These data indicate that under our reaction conditions, components within HeLa extract, but not H. pylori culture filtrate, are limiting for 32P radiolabel incorporation and are consistent with the interpretation that an H. pylori component catalyzes the transfer of 32P radiolabel from NAD to an acceptor within HeLa cell extracts.
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FIG. 2. The extent of 32P radiolabel from 32P-adenylate transferred to TCA-precipitated material as a function of both H. pylori culture filtrate and the soluble fraction of HeLa cell lysate. H. pylori culture filtrates and the soluble fraction of HeLa cell lysates were incubated at 25°C in the presence of [32P-adenylate]NAD (50 µM). After 15 min, 32P radiolabel transfer was scored by scintillation counting of 32P-radiolabeled TCA-precipitated material. (A) The soluble fraction of H. pylori culture filtrate was held constant (1 mg protein/ml), while the concentration of the soluble fraction of HeLa cell lysate was variable (0.0 to 1.0 mg protein/ml). (B) The soluble fraction of HeLa cell lysate was held constant (1 mg protein/ml), while the concentration of the H. pylori culture filtrate was variable (0.0 to 2.0 mg protein/ml). Each reaction was performed in triplicate, with the experiment performed at least three separate times.
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H. pylori-dependent transfer of 32P radiolabel to a specific protein within the soluble fraction of mammalian cell extracts. To evaluate the specificity of H. pylori-mediated transfer of the 32P radiolabel from NAD, H. pylori culture filtrate (1 mg protein/ml) was incubated for 15 min with HeLa extract (1 mg protein/ml) in the presence of either [32P-adenylate]-radiolabeled or nonradiolabeled NAD (50 µM) at 25°C. For reactions initially including nonradiolabeled NAD, [32P-adenylate]NAD was added after 15 min to a final concentration of 50 µM. For reactions initially including [32P-adenylate]NAD, nonradiolabeled NAD was added after 15 min to a final concentration of 50 µM. The final specific activity of [32P-adenylate]NAD was identical for both reaction conditions. The extent of 32P radiolabel transfer after 30 min was scored by scintillation counting of the TCA-precipitated material within the reaction mixture. These experiments revealed that the amount of 32P radiolabel transferred into TCA-precipitated material was significantly less (P = 0.015) in reactions incubated initially with nonradiolabeled NAD versus those incubated initially with radiolabeled DNA (Fig. 3A). Our results are consistent with the idea that the 32P-acceptor in HeLa cell lysates is limiting and suggest that the transfer of 32P radiolabel may be to a specific eukaryotic acceptor.
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FIG. 3. Characterization of the 32P radiolabel acceptor from HeLa cell extracts. The soluble fraction of HeLa cell lysates (1 mg protein/ml) was incubated with H. pylori culture filtrates at 25°C. (A) Reactions were conducted in the presence (x) of 50 µM of either [32P-adenylate]NAD or nonradiolabeled NAD. After 15 min, [32P-adenylate]NAD was added to reactions that were initiated with nonradiolabeled NAD, while nonradiolabeled NAD was added to reactions that were initiated with [32P-adenylate]NAD for a final concentration in each case of 50 µM NAD. The extent of 32P radiolabel transfer after 30 min was scored by scintillation counting of the TCA-precipitated material within the reaction mixture. Each reaction was performed in triplicate, with the experiment performed at least three separate times. Error bars indicate standard deviations, and the P values were calculated from the Student t test relative to the reaction mixture containing both H. pylori culture filtrates and the soluble fraction of HeLa cell lysates. A P value of <0.05 was considered significant. (B) Reactions were conducted for 15 min in the presence of 50 µM of [32P-adenylate]NAD. After 15 min, the samples were fractionated by SDS-PAGE (12%), the gel was dried, and the results were evaluated after phosphorimaging the dried gel.
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, small GTP-binding proteins (Ras and Rho), and actin monomers, all of which have predicted molecular masses of less than 131 kDa. Notably, the transfer of 32P radiolabel to a high-molecular-mass species is not idiosyncratic to culture filtrates prepared from H. pylori 26695. Culture filtrates prepared from two commonly used strains, J99 (ATCC no. 700824) and 60190 (ATCC no. 49503), also stimulated the 32P radiolabel transfer into TCA-precipitated material (data not shown), indicating that the activity is not specific to strain 26695. Moreover, substitution for the HeLa extracts with the soluble fraction of extracts prepared from Chinese hamster ovary cells (CHO-K1 cells; ATCC no. CCL-61), African green monkey kidney cells (Vero cells; ATCC no. CCL-81), or human gastric adenocarcinoma cells (AGS cells; ATCC no. CRL-1739) all yielded a radiolabeled high-molecular-mass species similar to that found with HeLa cells, but only in the presence of H. pylori culture filtrates (data not shown), indicating that the acceptor is not idiosyncratic to HeLa cells.
Evidence that H. pylori-dependent transfer of 32P radiolabel in the presence of NAD is ADP ribosylation. To more directly test for the existence of an ADP-ribosyltransferase within H. pylori culture filtrates, we used an approach that discriminates the active site of ADP-ribosyltransferases with exquisite specificity. In the absence of an ADP-ribose acceptor, UV radiation stimulates photo-cross-linking between the nicotinamide ring of NAD and a single glutamic acid residue that is universally conserved within the active site of ADP-ribosyltransferases (1, 25). The extent of the photo-cross-linking reaction can be monitored by scoring for the covalent transfer of radiolabeled nicotinamide from NAD to TCA-precipitable material (e.g., the ADP-ribosyltransferase) while concurrently scoring for the loss of ADP ribosylation activity due to modification of the active site. This probe has been used to map the conserved active-site glutamic acid residue in diphtheria toxin (8, 9), Pseudomonas aeruginosa exotoxin A (16), and pertussis toxin (2).
H. pylori culture filtrate (4 mg protein/ml) was incubated at 0°C in 20 mM Tris (pH 7.6), 10 mM NaCl with either [3H-nicotinamide]NAD or [32P-adenylate]NAD (50 µM) in the absence or presence of UV radiation (positioned 5 cm under a germicidal 254-nm UV light source [30W Philips]). The extent of radiolabel transferred at predetermined time points was scored by scintillation counting of the TCA-precipitated material within the reaction mixture. These experiments revealed that the amount of 3H radiolabel transferred to TCA-precipitated material increased with time and was significantly higher in the presence of UV radiation (Fig. 4A). In contrast, the amount of 32P radiolabel detected within the TCA-precipitated fraction did not increase over time in either the presence or the absence of UV radiation. Data from these experiments indicate that UV radiation stimulates the transfer of nicotinamide to a component within H. pylori culture filtrate. In order to visualize the radiolabeled H. pylori factor, these experiments were repeated except for substituting [14C-nicotinamide]NAD for [3H-nicotinamide]NAD. At the completion of each reaction, the sample was fractionated by SDS-PAGE, and the gels were visualized by phosphorimaging. Despite extensive exposure times, a distinct radiolabeled band could not be readily visualized within the gels (data not shown), which suggests that the amount of 14C-nicotinamide-labeled H. pylori factor within our culture filtrate preparations was below the detection threshold.
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FIG. 4. The H. pylori factor mediating ADP ribosylation of the HeLa target protein is susceptible to UV photolabeling with NAD. H. pylori 26695 culture filtrate (4 mg protein/ml) was incubated at 0°C with either [3H-nicotinamide]NAD (A and B) or [32P-adenylate]NAD (panel A only) (50 µM [A] or 200 µM [B]) in the presence or absence of UV radiation (as generated by a germicidal 254-nm UV light source [30W Philips]). (A) The extent of radiolabel transferred at predetermined time points was scored by scintillation counting of the TCA-precipitated material within the reaction mixture. The data are displayed as the amount of NAD incorporated as a function of time when incubated with either [3H-nicotinamide]NAD or [32P-adenylate]NAD in the presence or absence of UV radiation. (B) At predetermined times, aliquots were withdrawn and incubated an additional 15 min with HeLa cell lysates (1 mg protein/ml) in the presence of [32P-adenylate]NAD (50 µM), 20 mM Tris (pH 7.6), 10 mM NaCl at 25°C. The extent of 32P radiolabel transferred at predetermined time points was scored by scintillation counting of the TCA-precipitated 32P radiolabel within the reaction mixture. The data are presented as the activity relative to aliquots withdrawn from a control incubated at 0°C in the absence of NAD and UV radiation. Each reaction was performed in triplicate, with each experiment performed at least three separate times. Error bars indicate standard deviations.
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Conclusions. Collectively, our data support the presence of an ADP-ribosyltransferase activity within the culture filtrates of several strains of H. pylori that selectively modifies a soluble target protein found within several mammalian cell lines from different origins (e.g., human, nonhuman primate, or nonprimate). Based on these results, we are currently working to further characterize this activity, identify the H. pylori-derived factor that is responsible for the putative ADP ribosylation activity, and identify the mammalian ADP-ribose acceptor. Interestingly, PSI BLAST analysis of the H. pylori genome versus all known bacterial ADP-ribosyltransferases did not reveal an obvious candidate ADP-ribosyltransferase based on homology to conserved active site features (13). The strong association of bacterial-derived ADP-ribosyltransferase activity with a number of important bacterial toxins as well as a number of effectors secreted by pathogenic bacteria into mammalian cells (1) suggests the intriguing possibility that H. pylori might also generate a factor that contributes to pathogenesis of the bacterium by modifying a host target protein through ADP ribosylation.
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