Simon R. Clarke,1*
Richard F. Schuman,2,
James J. Mond,2 and
Simon J. Foster1
Department of Molecular Biology & Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom,1 Biosynexus Inc., 9119 Gaither Road, Gaithersburg, Maryland 208772
Received 30 March 2006/ Returned for modification 4 May 2006/ Accepted 9 May 2006
| ABSTRACT |
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| INTRODUCTION |
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Identification of suitable targets for opsonizing anti-S. epidermidis antibodies provides a potential alternative to antimicrobial chemotherapy. Different techniques have been used to identify candidate antigens in a range of pathogenic bacteria, including the closely related organism Staphylococcus aureus.
Bioinformatics have been used to identify putative surface and secreted proteins in Streptococcus pneumoniae and Neisseria meningitidis (37, 44). However, this method does not eliminate the need for expression and purification of suitable amounts of protein in a heterologous system. In a study of S. pneumoniae carriage using an experimental human colonization model McCool et al. identified a serum immunoglobulin G (IgG) and secretory IgA response to pneumococcal surface protein A as a result of colonization; individuals who did not become colonized after inoculation had preexisting antibodies to this protein (31).
Using randomly fragmented DNA of S. aureus in a bacterial expression library, which was subsequently screened with serum from infected patients, resulted in identification of a range of antigenic proteins. However, this required appropriate cloning of all expressed genes in frame with the fusion protein, and the target proteins had to be amenable to expression in Escherichia coli (11). More recently, antigenic components of S. epidermidis have been identified by Western blotting of cellular extracts with serum from experimentally infected rabbits (40).
In a recent study Clarke et al. (9) used a bacteriophage lambda expression library of S. aureus DNA, which did not require in-frame cloning into vector DNA, that was screened with convalescent patient serum to identify candidate antigens for prophylaxis. Recombinant polypeptides were then used to determine specific antibody titers in a large collection of human sera by an enzyme-linked immunosorbent assay (ELISA). Significantly higher titers of antibodies to several proteins were observed in individuals who were not nasal carriers of S. aureus at the time of serum collection than in individuals who were carriers. This led to the hypothesis that an increased antibody titer protected against nasal carriage, which was confirmed by protection studies performed with cotton rats.
In recent years, studies of surface proteins of S. aureus have led to development of several potentially efficacious immunological therapeutic and prophylactic strategies for control of this organism (15). A donor serum with a high anti-ClfA IgG titer has been shown to have the potential to reduce sepsis caused by S. aureus and mortality in infants with very low birth weights (6, 42). Currently, there is much research in which workers are trying to develop humanized anti-ClfA monoclonal antibodies for treatment of S. aureus infections (10, 21, 36), which could be used for passive immunotherapy. The collagen adhesin, Cna, has been proposed as a target for anti-adhesive antibody therapy (43) and as a vaccine component (33). It has also been suggested that FnBPA and FnBPB could be targets for passive immunotherapy (16, 38).
In this study we identified antigenic components of S. epidermidis using a bacteriophage lambda expression library screened with sera from patients with confirmed S. epidermidis and S. aureus infections. The relative titers of serum IgG reactive to the antigens were determined by ELISA. Polyclonal antibodies generated from these recombinant polypeptides were shown to be opsonic in vitro, demonstrating their potential therapeutic efficacy.
| MATERIALS AND METHODS |
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Human sera. Eighteen sera were used to screen the genomic expression library. Since one element of this study was to identify antibodies which cross-react with proteins from different species of staphylococci, a variety of sources of sera were used. Of the 18 samples used in the screening process, 4 were obtained from hospital workers, 4 were obtained from community volunteers, 4 were obtained from patients with S. epidermidis infections, and 6 were obtained from patients with S. aureus infections. All samples were collected at the Royal Hallamshire Hospital, Sheffield, United Kingdom; the individuals gave informed consent, and the study was approved by the local IRB (SSREEC/02/299). For ELISA experiments, serum samples from 15 individuals with confirmed S. epidermidis infections, collected at Aston University, Birmingham, United Kingdom, were used along with 10 samples from community volunteers collected at the Royal Hallamshire Hospital, Sheffield, United Kingdom.
Screening of expression libraries with human sera. Bacteriophage were propagated, and plaque lifts were made on Immobilon-NC membranes (Millipore) and probed according to the manufacturer's instructions with human sera diluted 1:1,000 and then with alkaline phosphatase-conjugated anti-human IgG gamma chain-specific monoclonal antibodies (Sigma) diluted 1:50,000. Additional rounds of screening resulted in pure phages from which phagemids were excised (according to the manufacturer's instructions).
Phagemid DNA was purified using QIAprep spin miniprep columns, and DNA was sequenced using primers T3 and T7. BLAST-N searches using sequences from either end of the insert were carried out against the S. epidermidis ATCC 12228 genome (http://www.tigr.org).
E. coli XLOLR containing excised phagemids was grown overnight in the presence of 10 µM isopropyl-ß-D-thiogalactopyranoside (IPTG), cells were boiled in sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) buffer, and the proteins were separated by 12% (wt/vol) SDS-PAGE prior to Western blotting and probing with human serum, which were carried out by using standard laboratory methods, as described previously (8).
Cloning and overexpression of recombinant polypeptides. Oligonucleotides were used to PCR amplify antigen-encoding genes (Table 2). DNA fragments were cloned into pET24-d or pET21-a. Clones were verified by DNA sequencing. His6-tagged recombinant polypeptides were expressed, purified, and verified by N-terminal sequencing.
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To quantify specific antibodies to each antigen in serum samples, 100-µl portions (10 µg/ml in PBS) of recombinant protein were added to 96-well microtiter plates (4°C, overnight). The plates were washed and blocked as described above. One hundred microliters of a randomized 1:100 dilution serum sample (consistently within a linear range) was added to each well (1 h) at room temperature. The plates were developed as described above. The results were standardized for total IgG concentration in each serum sample.
Opsonization of S. epidermidis. Antibodies were raised by inoculating 8-week-old female BALB/c mice with appropriate recombinant antigens. The opsonophagocytic (bacterial killing) activities of specific antisera were determined with an assay by using S. epidermidis Hay in the presence of polymorphonuclear leukocytes (PMNs) and complement, as described previously (14). Briefly, PMNs were isolated from freshly obtained human blood using PMN separation medium (Robbins Scientific) according to manufacturer's instructions. Reference antibody was mixed with ca. 2 x 106 PMNs, human complement, and ca. 3 x 104 bacteria in a sterile 96-well plate in a final volume of 100 µl. Immediately after mixing a sample of bacteria was removed from each well and plated onto tryptic agar plates with 5% (vol/vol) sheep blood (T0 sample). The assay plate was incubated for 2 h at 37°C on an orbital shaker. A second sample was removed from each well and plated as described above (T2 sample). The plates were incubated at 37°C for 20 to 24 h, and the percentage of bacterial killing was calculated using the following formula: (T0 T2/T0) x 100.
Ligand binding assays. Ligand binding was assayed by Western blotting, using biotinylated human serum proteins as described previously (8). Human fibrinogen, human lactoferrin, and bovine submaxillary mucin were purchased from Sigma. Human fibronectin was obtained from ICN.
| RESULTS AND DISCUSSION |
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scaA and scaB are members of a multigene family. Screening of the library with human sera resulted in identification of two proteins, SE0433 (locus 6) and SE2319 (locus 7), which are closely related to each other. Sequence analysis using CLUSTALW (http://npsa-pbil.ibcp.fr) revealed 45% identity for the entire length of both proteins and more than 60% identity in the 110-amino-acid C-terminal domains. Both proteins have apparent signal peptides, which result in mature proteins whose molecular masses are 25 kDa (SE0433) and 32 kDa (SE2319). Interestingly, these two proteins are both members of a 10-protein family in S. epidermidis, based on homology of the ca. 110-amino-acid C-terminal domain. We designated these proteins staphylococcal conserved antigen A (ScaA), ScaB, ScaC, ScaD, ScaE, ScaF, ScaG, ScaH, ScaI, and ScaJ (Fig. 5). SE2319 and SE0433 are ScaA and ScaB, respectively. ScaA, ScaB, and ScaE all contain one or more LysM domains, which were originally identified in enzymes that degrade bacterial peptidoglycan but are also found in many other bacterial proteins that are associated with cell walls (5). The LysM domain has a peptidoglycan-binding fold (27), and although a potential binding site in a shallow groove on the surface of the protein has been identified, the precise component to which it binds remains unknown (4).
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During this study it was shown that SE2319 (ScaA) is a novel autolysin, which has been designated Aae (23), and its paralogue in S. aureus has also been identified (24) and has been shown to be a virulence factor (28). While it is not essential that vaccine or antibody targets have such characteristics, these are attractive attributes as it is important that antigens are expressed on the bacterial cell surface during the infectious process so that the immune system of the host can mount a response. S. aureus possesses a 10-member Sca protein family with homology in the C-terminal domain. Open reading frames encoding homologous C-terminal domains are also to be found in the genomes of S. pneumoniae, Streptococcus pyogenes, Streptococcus agalactiae, Streptococcus mutans, Enterococcus faecalis, Lactococcus lactis, and Bifidobacterium longum (results not shown). Vaccination against, or therapeutic antibodies reactive to, such proteins may provide targets for use against a broad spectrum of gram-positive bacteria.
Human antibody response to S. epidermidis antigens. An antibody response to a given antigen is indicative of its expression in vivo and of its potential for use in a subunit vaccine or as a target in passive immunotherapy or prophylaxis. The immune response against the selected antigens was quantified by ELISA using four recombinant proteins and 30 serum samples, including 20 samples of disease-associated sera (15 S. epidermidis infections and 5 S. aureus infections) and 10 serum samples from healthy blood donors (5 non-S. aureus nasal carriers and 5 S. aureus nasal carriers). Two of the original six polypeptides (Fig. 4) were dropped from the study; AtlE propeptide was not included as it did not react with serum in the Western blotting stage, and ScaA was not included because of its homology to ScaB.
The statistical significance of differences in serum antibody levels between the diseased and healthy patient groups was tested using the Kruskall-Wallis test. A comparison of the results for diseased and healthy individuals revealed that all four recombinant antigens had significantly higher (P
0.05) reactive IgG titers in serum samples obtained from diseased individuals than in serum samples obtained from healthy individuals (Table 4). This indicates that all four proteins are produced in vivo and are thus immunological markers of infection that have potential diagnostic utility.
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In this study we identified many antigenic S. epidermidis proteins. Some of these proteins are potential targets for immunotherapy, which provides a novel strategy for control of S. epidermidis infection, and could potentially reduce the toll of infection and have a significant impact on human health. Interestingly, a subset of S. epidermidis proteins are also conserved in S. aureus (9) and in other genera. These antigens may have important functions in disease.
| ACKNOWLEDGMENTS |
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Oligonucleotide synthesis and N-terminal sequencing were carried out by Arthur Moir, University of Sheffield, Sheffield, United Kingdom. Human serum samples were kindly provided by Robert Read, Royal Hallamshire Hospital, Sheffield, United Kingdom, and Peter Lambert, Aston University, Birmingham, United Kingdom. S. epiderimidis 138 was kindly supplied by Paul Williams, University of Nottingham, United Kingdom.
| FOOTNOTES |
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Present address: Department of Pathobiology, School of Public Health, Tehran University of Medical Sciences, P.O. Box 14155-6446, Tehran, Iran. ![]()
Present address: Capital Genomix Inc., 9290 Gaither Road, Gaithersburg, MD 20877. ![]()
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