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Infection and Immunity, October 2007, p. 4804-4816, Vol. 75, No. 10
0019-9567/07/$08.00+0 doi:10.1128/IAI.01877-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Natalie M. Quanquin,1,
William H. Vecino,1,
Uma Devi Ranganathan,1
Lydia Tesfa,1
William Bourn,2
Keith M. Derbyshire,3,4
Norman L. Letvin,5
William R. Jacobs Jr.,1,6 and
Glenn J. Fennelly7,8*
Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York 10461,1 Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory, 7925, Cape Town, South Africa,2 Division of Infectious Disease, Wadsworth Center, New York State Department of Health,3 Department of Biomedical Sciences, University at Albany, Albany, New York 12201,4 Division of Viral Pathogenesis, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02115,5 Howard Hughes Medical Institute, Albert Einstein College of Medicine, Bronx, New York 10461,6 Department of Pediatrics, Albert Einstein College of Medicine, Bronx, New York 10461,7 The Lewis M. Fraad Department of Pediatrics, Jacobi Medical Center, Bronx, New York 104618
Received 28 November 2006/ Returned for modification 9 January 2007/ Accepted 15 July 2007
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In the present study we observed, for the first time, the eukaryotic expression of reporter genes within eukaryotic nuclei that had been delivered by BCG. This expression was detected following infection of eukaryotic cell cultures with BCG harboring a plasmid encoding enhanced green fluorescent protein (GFP) under the control of a eukaryotic promoter.
We tested several approaches to improve the ability of mycobacteria to transfer plasmids to mammalian cells, including the use of lysis-susceptible, hyperconjugating, and increased-plasmid-copy-number mutants. Although early lysis of mycobacteria had no effect on the efficiency of gene transfer to mammalian cells, we observed a statistically significant, albeit only moderate (1.7-fold), increase in the level of plasmid transfer to eukaryotic cells infected with hyperconjugating M. smegmatis mutants compared to the level of plasmid transfer to eukaryotic cells infected with wild-type M. smegmatis.
The pAL5000 copy number is limited by the availability of two plasmid-encoded proteins, RepA and RepB, that recognize the plasmid origin of replication (oriM). To overcome negative autoregulation of pAL5000, we overexpressed these proteins in trans from the chromosome in M. smegmatis. We observed that M. smegmatis strains that overexpressed Rep proteins (referred to as RepHigh M. smegmatis) increased the plasmid copy number up to 10-fold and transferred genes to HeLa or J774 cells upon infection up to 3.5-fold more frequently than a control M. smegmatis strain (RepWt M. smegmatis). Vaccination with RepHigh M. smegmatis strains harboring an oriM-based plasmid encoding HIV type 1 (HIV-1) gp120 under the control of a eukaryotic promoter generated gp120-specific CD8 T-cell responses among peripheral blood mononuclear cells (PBMCs) in mice at an up-to-threefold-higher frequency than vaccination with RepWt M. smegmatis harboring the same plasmid. These observations encourage the further development of mycobacteria as efficient DNA vaccine delivery vectors.
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TABLE 1. Plasmids and strainsa
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A CMV promoter from pcDNA3.1(–) (Invitrogen, Carlsbad, CA) was cloned into pYUB1058 to allow HIV-1 gp120 expression from a mycobacterial plasmid. PCMV was cloned on an NruI-SmaI fragment into pYUB1058 digested with PvuII and EcoRV to create pCMVoriM. The HIV-1 IIIB (HXBc2)-derived gp120 envelope gene, optimized for human codon usage, was subcloned from plasmid pVR1012x/s(VRC2000)-gp120 (generously provided by Gary Nabel, Vaccine Research Center, National Institute of Allergy and Infectious Diseases). gp120 was inserted downstream of PCMV in pCMVoriM cleaved with EcoRV and BamHI to generate pgp120hE. The gp120 coding sequence was confirmed by sequence analysis.
The recently characterized, increased-copy-number mycobacterial plasmid pHIGH100 (accession number EF21638) was derived from p16R1 (14) by mutation of oriM such that a higher level of replication in mycobacteria was achieved (3a). oriM from pHIGH100 was cut by SfoI and EcoRV and cloned into pYUB1143 and pYUB1146, which were linearized by MluI and filled in by the Klenow fragment, to generate pHIGFPhE and pHIgp120hE (which contain the PCMV::gpf and PCMV::gp120 expression cassettes, respectively).
Bacterial strains and culture conditions.
E. coli DH5
was used for routine manipulations of plasmid DNA, which was purified using QIAGEN midiprep columns (QIAGEN, Inc., Valencia, CA). E. coli transformants were grown at 37°C in LB media supplemented with kanamycin (40 µg/ml) and/or hygromycin (150 µg/ml) as appropriate to select for plasmid transformants. Plasmid pgp120hE DNA for intramuscular injection was produced in E. coli and purified with a QIAGEN Maxiprep kit by following the manufacturer's instructions. Table 1 lists the mycobacterial strains used in this work. Mycobacteria were grown in Middlebrook 7H9 broth (Becton Dickinson, Franklin Lakes, NJ) with 0.05% Tween 80 at 37°C. Cultures of auxotrophic mycobacteria were supplemented with 40 µg/ml of lysine, 0.1 µg/ml of diaminopimelic acid, or 48 µg/ml of pantothenate (Sigma Chemical Co., St. Louis, MO). Plasmids were electroporated into competent mycobacterial cells as previously described (35, 44). Cultures were inoculated from individual colonies grown on Middlebrook 7H10 medium plates or subcultured from frozen stocks of previously screened clones, with appropriate antibiotic selection (20 µg/ml of kanamycin, 50 µg/ml of hygromycin, and/or 20 µg/ml of apramycin) and supplements. Samples were grown to late-log phase (optical density at 600 nm, 1) and diluted in phosphate-buffered saline (PBS)-Tween for administration to eukaryotic cell cultures. Cell counts were verified by plating serial dilutions of the inocula.
Measurement of plasmid copy number. The relative plasmid copy numbers of RepHigh, pHIGH100, and RepWt derivatives were determined by comparing the amounts of plasmid DNA extracted from the derivatives. The results were corroborated by analyzing the distribution and intensity of GFP expression in populations of various Rep derivatives of M. smegmatis expressing GFP. M. smegmatis was grown in 6 ml of Middlebrook 7H9 medium to log phase (optical density at 600 nm, 0.8 ± 0.02) before plasmid extraction using a modified Qiaprep kit (QIAGEN) protocol. Briefly, pelleted M. smegmatis was resuspended with 250 µl of P1 buffer containing 10 mg/ml lysozyme and incubated at 37°C for 4 h in the presence of RNase for 10 min, and then it was lysed at room temperature for 5 min with 300 µl of P2 lysis buffer, which was then neutralized with 350 µl of prechilled N3 buffer. Aliquots of serial twofold dilutions of extracted plasmid DNA were run on a 0.8% agarose gel and stained with ethidium bromide. Plasmid quantities were estimated using ImageJ software, version 1.34n (Wayne Rasband; http://rsb.info.nih.gov/ij/) after calibration with the DNA High Mass Ladder (Invitrogen). For estimation by fluorescence-activated cell sorting (FACS) analysis, a 500-µl suspension of each clone was washed twice with an equal volume of PBS and then resuspended in 1 to 2 ml PBS. The distribution and intensity of GFP expression among 50,000 bacilli were determined by FACS analysis using a BD Biosciences FACScan flow cytometer and were analyzed by using CellQuest software (Becton Dickinson, Mountain View, CA).
Infection of mammalian cell cultures with mycobacteria. RAW 264.7 murine macrophage and HeLa (human cervical adenocarcinoma) cell lines were grown in Dulbecco's modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 2% HEPES buffer, and 5% NCTC-109 medium (Gibco). J774 murine macrophage cells were grown in DMEM supplemented with 10% FBS. Cells were transferred at a concentration of 1 x 105 to 2 x 105 cells/well into a 48-well plate and incubated at 37°C in the presence of 10% CO2 for 2 to 24 h before infection to generate semiconfluent lawns of cells. To determine the optimal inoculum for each cell line, freshly grown mycobacteria were added to the cells at a multiplicity of infection (MOI) of 1, 3, 10, 50, or 100 to obtain a total volume of no more than 350 µl/well in a 48-well plate. To determine whether viable bacteria are required for gene transfer to mammalian cells, mycobacteria were killed by heating them to 80°C for 5 min prior to infection of RAW 264.7 cells. After certain infections, isoniazid (25 µg/ml) was added immediately to induce premature lysis. Extracellular bacteria were killed by addition of 50 µg/ml of gentamicin (Gibco). To compare the efficiency of lipid-mediated DNA plasmid transfection to the efficiency of bactofection, lipofectamine (Invitrogen) was diluted 1:50 in Opti-Mem medium (Gibco) and then incubated at room temperature for 5 min, added to 10 µg of DNA in an equal volume of medium, and incubated for 20 min at room temperature before it was added to RAW 264.7 or HeLa cells. After incubation for 3 to 5 h, cells were washed three times with DMEM and resuspended in 0.5 to 2 ml of medium. Cells were examined by fluorescence microscopy and FACS analysis (after trypsinization and resuspension in 4% FBS-PBS) at various intervals for up to 5 days after infection.
Microscopic imaging and FACS analysis. Live RAW 264.7 and HeLa cell samples were examined after infection using an Olympus IX 81 microscope (Melville, NY) equipped with a Cooke Sensicam QE air-cooled charge-coupled device camera and a mercury lamp for fluorescence illumination. Images were collected using IPLab Spectrum software (Scanlytics, Rockville, MD) at a magnification of x10 or x40. Adobe Photoshop (Adobe Systems, San Diego, CA) was used to restore color and merge images captured using different fluorescence filters or normal light (phase-contrast) illumination. The fluorescence in a minimum of 105 cells per sample was measured by FACS using a FACScan or FACSCalibur cytometer and CellQuest software (Becton Dickinson). Data were further analyzed with the FloJo software (Tree Star, Inc., Ashland, OR).
Animals and immunization. Six-to-eight-week-old female BALB/c mice (Charles River Laboratories) were inoculated with 108 CFU of RepHigh M. smegmatis strains (which overexpress Rep proteins and elevate the plasmid copy number) harboring pgp120hE or of BCG or M. smegmatis strains harboring pHIgp120E via the intraperitoneal route (Table 1). The relative plasmid copy number per bacterium of pHIgp120E or RepHigh and RepWt strains was confirmed prior to and after immunization using the agarose gel density method. To compare the immunogenicity of M. smegmatis having the wild-type plasmid copy number, groups of control mice were inoculated with the corresponding RepWt M. smegmatis strain. To compare the effects of the usual route of DNA vaccination on tetrameric responses, intramuscular purified pgp120hE was administered at a dose of 50 µg per mouse (25 µg/gastrocnemius muscle) via intramuscular injection. To control for the nonspecific effects of mycobacteria or DNA vaccination on tetrameric responses, groups of mice were inoculated with 108 CFU of 155N(pCMVoriM) or BCG(pHI) or with purifed pCMVoriM DNA by the same method.
Tetramer staining and flow cytometric analysis. To determine the frequency of gp120-specific tetrameric responses in peripheral blood mononuclear cells (PBMCs) and splenocytes, blood was obtained from the retroorbital plexus and spleens were harvested 7 days after inoculation. H-2Dd tetrameric complexes folded with the P18 peptide (RGPGRAFVTI) (5), a sequence found in the V3 loop of HIV-1 HXBc2 envelope protein, were prepared as described previously (5). Fresh blood samples (200 µl from each mouse) or splenocyte suspensions (recovered after passage through a 70-µm nylon cell strainer) were diluted in 3 ml RPMI medium with 40 U/ml heparin and layered over Ficoll-Hypaque (lympholyte-M) before centrifugation at 400 x g for 20 min at 20°C. The lymphocyte layer was carefully transferred to a fresh tube, diluted with 10 ml of PBS, and then pelleted and washed in 1 ml PBS with 2% FCS before resuspension in 100 µl (final volume) of the solution. The cells were stained with P18-tetramer-phycoerythrin, vortexed briefly, and incubated at 20°C for 20 min, and this was followed by staining with APC-CD8 for 20 min at 20°C. To control for nonspecific fluorescence, samples were incubated with no monoclonal antibody, with only APC-CD8, and with only phycoerythrin-CD4. The cells were washed with 5 ml PBS at room temperature, resuspended in 2% formaldehyde in PBS, vortexed, and analyzed with a FACSCalibur cytometer. A minimum of 104 cells were analyzed for each sample.
Statistical analysis. Statistical tests were performed using the Student t test or one-way analysis of variance with Dunnett's posttest by Prism 4.01 for Windows (GraphPad Software, Inc., San Diego, CA). P values of <0.05 were considered significant.
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FIG. 1. M. smegmatis expresses GFP from a mycobacterial promoter but not from a eukaryotic promoter. Plasmids that replicate in mycobacteria encoding GFP under the control of a eukaryotic immediate-early CMV promoter/enhancer (A) or the mycobacterial hsp60 promoter (B) were constructed. Abbreviations: oriE, origin of replication in E. coli; oriM, origin of replication in mycobacteria; Kanr, kanamycin resistance gene; Hygr, hygromycin resistance gene; EGFP, enhanced GFP; SV40 poly A, simian virus 40 late polyadenylation signal. M. smegmatis strains transformed with pGFPhE [strain 155(pGFPhE)] or pGFPkP [strain 155(pGFPkP)] were cultured and analyzed by flow cytometry for GFP expression (C and D). FSC, forward scatter.
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FIG. 2. Eukaryotic GFP expression is observed in RAW 264.7 and HeLa cells infected with 155(pGFPhE). RAW 264.7 cells were infected with 155(pGFPkP) (A) or 155(pGFPhE) (B) at an MOI of 10. HeLa cells were infected with 155(pGFPkP) (D) or 155(pGFPhE) (E) at an MOI of 100. Both groups were observed by fluorescence microscopy 24 h postinfection, and the original images were taken at a magnification of x40. Cells infected with 155(pMV261h), 155(pGFPkP), or 155(pGFPhE) at an MOI of 10 (RAW 264.7 cells) (C) or 50 (HeLa cells) (F) were also collected 5 days postinfection for flow cytometric analysis. Data representative of a minimum of three experiments are shown, and the quadrant axes are aligned to reduce the background in high-percentage (axis 1) and low-percentage (axis 2) GFP-expressing samples. FSC, forward scatter.
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To more precisely identify cells with internalized bacteria that expressed the GFP transgene, RAW 264.7 and HeLa cells were infected with M. smegmatis harboring plasmid pGFPhE/RFP (which contains the PCMV::egfp and Pmsp12::dsRed2 expression cassettes). By using microscopy, it was observed that a single internalized red mycobacterium was sufficient to permit GFP expression by RAW 264.7 or HeLa cells (Fig. 3).
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FIG. 3. Eukaryotic GFP expression in RAW 264.7 and HeLa cells requires the presence of intracellular M. smegmatis 155(pGFPhE/RFP). RAW 264.7 cells were infected with M. smegmatis 155(pGFPhE/RFP) at an MOI of 10 (A), and HeLa cells were infected at an MOI of 100 (B). Fluorescing mycobacteria (red) in RAW 264.7 cells expressing GFP (green) were observed 24 h after infection. Red and green images were combined, and enhanced emission was recorded using phase-contrast and red and green filter fluorescence microscopy. The original images were taken at a magnification of x40.
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FIG. 4. M. bovis BCG mediates plasmid transfer to infected HeLa (A) and J774 (B) cells. (A) HeLa cells were infected with BCG(pGFPhE) (BCG Pasteur harboring pGFPhE that contains the eukaryotic PCMV::egfp expression cassette) at an MOI of 50 and analyzed by flow cytometry 24 h after infection. The mean (and standard error of the mean) proportion of HeLa cells expressing GFP is shown based on the results of three experiments. The proportion of HeLa cells expressing GFP by 24 h after infection with BCG(pGFPhE) was significantly higher than the background frequencies after infection with control strain BCG(pGFPhE) (one asterisk, P < 0.05). (B) J774 cells were infected with BCG harboring plasmid pHI [BCG(pHI)], pGFPhE [BCG(pGFPhE)], or pHIGFPhE [BCG(pHIGFPhE)] at an MOI of 50 and analyzed by flow cytometry 24 h after infection. The mean (and standard error of the mean) proportion of J774 cells expressing GFP is shown based on the results of three experiments. The proportion of J774 cells expressing GFP by 24 h after infection with BCG(pHIGFPhE) was significantly higher than the proportion after infection with control strain BCG(pGFPhE) (two asterisks, P < 0.01).
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Hyperconjugation mutants of M. smegmatis transfer DNA plasmids to mammalian cells more efficiently than the wild type. We predicted that an M. smegmatis conjugation system that mediates DNA transfer to other mycobacteria (26) may contribute to plasmid transfer to mammalian cells. It was recently discovered that transposon insertion mutations within and near the Esx-1 locus of the M. smegmatis chromosome lead to a hyperconjugation phenotype (11). The Esx-1 locus is thought to encode a specialized secretory apparatus responsible for secreting at least two proteins (EsxA and EsxB), which are encoded within the Esx locus (4, 7). The insertions are predicted to disrupt Esx-1 functions that normally suppress conjugation, perhaps by interfering with EsxA and EsxB secretion. Complementation of the mutants with the wild-type Esx-1 region of M. tuberculosis reduces or eliminates the hyperconjugative phenotype (11).
HeLa cells were infected with a hyperconjugating M. smegmatis mutant (MKD211) harboring pGFPhE. We observed a significantly higher frequency of GFP expression in HeLa cells after infection with MKD211 than after infection with the wild-type parent strain (P = 0.04) (Fig. 5). Complementation of the mutation with the M. tuberculosis Esx-1 locus suppressed the increased transfer of pGFPhE to infected cells relative to the mutant and wild-type strains (Fig. 5). In addition, an M. smegmatis mutant with disruption of the lpqM gene that conjugates 1,000-fold less than the wild type was still able to mediate bactofection, albeit inefficiently (data not shown).
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FIG. 5. Hyperconjugative M. smegmatis strain 211(pGFPhE) mediates transfer of pGFPhE to HeLa cells more efficiently than wild-type M. smegmatis. HeLa cells were infected with 211(pGFPhE), 155(pGFPhE) (wild-type M. smegmatis harboring pGFPhE), or 211Esx1(pGFPaE) [211(pGFPhE) complemented with the Esx-1 region of M. tuberculosis] at an MOI of 100 and collected 4 to 5 days postinfection for flow cytometric analysis. The P value for a comparison of the percentage of HeLa cells expressing GFP after infection with 155(pGFPhE) and the percentage of HeLa cells expressing GFP after infection with 211(pGFPhE) was <0.05 (indicated by an asterisk). The data are representative of a minimum of three experiments. The mean (and standard error of the mean) peak intensity of GFP expression is shown for each strain.
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Overexpression of Rep proteins increases the copy number of oriM-based plasmids in M. smegmatis and enhances the gene transfer frequency to mammalian cells. A potential limitation of the use of mycobacteria as vectors for DNA vaccines is that mycobacterial plasmids exist at a low copy number, restricting the amount of transferable plasmid. pAL5000, the best-characterized mycobacterial plasmid, is present at a level of only five copies per bacterium (40). pAL5000 encodes two proteins, RepA and RepB, which are thought to form an essential replication initiation complex that recognizes and initiates replication from the origin of replication, oriM (2, 3, 37). A negative regulatory circuit appears to control mRNA synthesis of RepA and RepB (38) and thus reduce their expression, which directly impacts the initiation of replication and copy number.
We investigated whether overexpression of Rep proteins resulted in increased replication of pAL5000. Three M. smegmatis RepHigh strain derivatives were constructed expressing either RepA, RepB, or RepAB from the chromosome (designated 155A,155B, and 155AB). pGFPhP was introduced into each strain, and the relative quantities of pGFPhP extracted from the strains were compared (Fig. 6). In each strain, elevated expression of Rep proteins resulted in increased yields of plasmid DNA that were up to 10-fold greater than the wild-type yields (Fig. 6A and 6B).
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FIG. 6. Measurement of relative copy number of plasmid pGFPhP per bacterium in various recombinant RepHigh and RepWt M. smegmatis strains. Following extraction of pGFPhP from 108 CFU of each strain, DNA was eluted with 40 µl of distilled H2O, and aliquots of each sample were loaded on a 0.7% agarose gel. (A) Agarose gel comparing relative amounts of pGFP isolated from each strain. The sample volumes loaded are indicated above the lanes. The RepWt strain 155N contains pMV361 without the repAB gene insert. (B) Estimates of the amount of plasmid DNA recovered from 108 CFU of each strain based upon quantification of the intensity of plasmid bands on the agarose gel by the software ImageJ, version 1.34n. Two asterisks indicate that the P value is <0.01 for comparisons of RepHigh strains 155AB(pGFPhP), 155A(pGFPhP), and 155B(pGFPhP) with strain 155N(pGFPhP). The mean (and standard error of the mean) amounts of plasmid DNA shown are based on the results of three experiments. (C) Representative flow cytometry analysis of various RepHigh M. smegmatis strains harboring pGFPhP (which contains the Phsp60::egfp cassette) indicated by different colors. A population consisting of 50,000 bacteria of each strain was sorted by flow cytometry. Strain mc2155 without a plasmid (indicated by purple shading) served as a negative control. (D) Peak intensity of GFP expression. The peak intensity of GFP expression by populations of each strain was measured by FACS. The mean (and standard error of the mean) peak intensities of GFP expression shown are based on the results of three experiments. The P values for comparisons of the peak GFP intensities with that of RepWt strain 155N(pGFPhP) were <0.01 for RepHigh strains 155AB(pGFPhP) and 155A(pGFPhP) (two asterisks) and <0.05 for 155B(pGFPhP) (one asterisk).
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The ability of RepHigh strains to transfer pGFPhE into HeLa or J774 cells was examined. The frequency of transfer of pGFPhE into HeLa cell nuclei infected with a RepAHigh strain was up to 3.5-fold higher by day 3 postinfection and up to 3-fold higher by 12 h postinfection in J774 cells than the frequency of transfer with the controls (Fig. 7). These results suggest that an increased plasmid copy number in M. smegmatis correlates with enhanced plasmid transfer to mammalian cells.
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FIG. 7. RepHigh M. smegmatis strains mediate bactofection in HeLa (A) or J774 (B) cells more effectively than RepWt M. smegmatis. HeLa cells (A) or J774 cells (B) were infected with RepHigh M. smegmatis strain 155AB(pGFPhE), 155A(pGFPhE), or 155B(pGFPhE) or with RepWt strain 155N(pGFPhE). The proportion of HeLa cells expressing GFP was measured at different time points by FACS after infection. The mean (and standard error of the mean) proportions of HeLa or J774 cells expressing GFP shown are based on the results of three experiments. The proportion of HeLa cells expressing GFP by 72 h after infection with RepHigh strains 155AB(pGFPhE), 155A(pGFPhE), and 155B(pGFPhE) was significantly higher than the proportion after infection with RepWt strain 155N(pGFPhE) (two asterisks, P < 0.01); the proportion of J774 cells expressing GFP by 12 h after infection with RepHigh strain 155AB(pGFPhE) was significantly higher than the proportion after infection with RepWt strain 155N(pGFPhE) (two asterisks, P < 0.01).
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Immunization with recombinant M. smegmatis strains harboring an HIV gp120 eukaryotic expression plasmid generates gp120-specific CD8 T cells in mice. Several candidate immunogens, including recombinant live attenuated viruses (23) and bacteria (22), are being studied for the generation of T-cell responses against HIV. To determine the effect of a higher plasmid copy number on the frequency of gp120-specific T-cell responses, we compared the frequencies of gp120-specific tetrameric responses after immunization with recombinant M. smegmatis and BCG strains harboring pHIgp120hE. The frequency of P18 tetramer staining among CD8+ T cells from mice immunized with strain 155AB(pgp120hE) was approximately twofold higher (P < 0.05) for splenocytes and threefold higher (P < 0.001) for PBMCs (0.12% ± 0.065%) than the frequency in mice immunized with RepWt strain 155N(pgp120hE) (Fig. 8). The magnitude of the P18 tetrameric responses among PBMCs after 155AB(pgp120hE) immunization was approximately one-half (48.2%) the magnitude detected after intramuscular pgp120hE immunization (Fig. 8). Agarose gel analysis of plasmids recovered from M. smegmatis prior to inoculation confirmed that strain 155AB(pgp120hE) had a fivefold-higher copy number of pgp120hE per bacterium on average than strain 155N(pgp120hE) (data not shown). Surprisingly, no gp120-specific responses above the background level were detected among splenocytes 1 week after immunization with BCG(pHIgp120hE) in control BCG-immunized mice (data not shown). Also, the frequency of tetrameric responses among splenocytes 1 week after immunization were 2.19-fold higher after intraperitoneal inoculation of RepWt strain 155N(pgp120hE) than after inoculation of 155(pHIgp120hE) (data not shown).
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FIG. 8. RepHigh M. smegmatis strain 155AB(pgp120hE) elicits a higher frequency than RepWt M. smegmatis strain 155N(pgp120hE): tetramer staining and flow cytometric analysis of PBMCs (A) and splenocytes (B) after immunization of BALB/c mice with purified pgp120hE, RepHigh, or RepWt strains harboring pgp120hE. PBMCs or splenocytes were recovered from groups of three to five mice 7 days after immunization with 108 bacilli. The gated population represented both CD8 and P18 tetramer-staining-positive T cells. The mean (and standard error of the mean) percent gp120 P18 tetramer-positive CD8 T cells among PBMCs or splenocytes is shown for each group of mice. After subtraction of background responses in control mice immunized with 155N(pCMVoriM) or 155N(pCMVoriM) (not shown), the frequencies of CD8 and P18 tetramer staining responses were significantly higher after RepHigh strain immunization than after RepWt strain immunization (for PBMCs, P < 0.01 [two asterisks]; for splenocytes, P < 0.05 [one asterisk]). The frequencies of HIV-1 P18-specific CD8+ T-cell responses among PBMCs were significantly higher after intramuscular pgp120hE immunization than after strain 155AB(pgp120hE) immunization (one asterisk, P < 0.05).
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Macrophages are the natural target and host for mycobacteria in vivo. Despite the high rate of infection (>95%) of RAW 264.7 murine macrophage cells by recombinant M. smegmatis observed in the present study, only a very low proportion (0.036% ± 0.1%) of the infected cells expressed GFP. Nevertheless, the efficiency of mycobacterial bactofection in RAW 264.7 cells was comparable to that observed after lipofectamine transfection (0.0385% ± 0.01%). A higher proportion of HeLa cells than of RAW 264.7 cells infected with M. smegmatis expressed GFP, despite a much lower frequency of bacterial uptake in HeLa cells than in RAW 264.7 cells. Although the overall efficiency of mycobacterial pGFPhE bactofection per cell was fivefold lower than the efficiency of lipofectamine transfection, we estimated that the efficiency of the former was 100,000-fold higher per microgram of plasmid DNA. Notably, microscopic analysis of RAW 264.7 and HeLa cells infected with M. smegmatis harboring the dual-color fluorescence plasmid pGFPhE/RFP revealed that infection with a single mycobacterium was sufficient for GFP transgene expression in the mammalian cells.
Limitations to the use of mycobacteria as vectors for DNA plasmid transfer include their exclusive residence in the vacuole of infected antigen-presenting cells, which restricts their ability to release plasmids directly to the host cell cytoplasm, and the low copy number of mycobacterial plasmids (about five copies per cell). To overcome these restrictions, we determined whether M. smegmatis with an enhanced-conjugation or premature-lysis phenotype or M. smegmatis or BCG with an increased-plasmid-replication phenotype would facilitate DNA plasmid transfer to the mammalian cell nucleus.
We did not observe an increase in the frequency of plasmid transfer in HeLa cells infected with mycobacterial auxotrophs that lysed prematurely compared to the cells infected with wild-type strains. This is in contrast to observations of other workers, who found that auxotrophic mutants of Shigella that lyse prematurely are highly effective vectors for plasmid gene transfer to mammalian cells (33). Unlike Shigella and Listeria, wild-type M. smegmatis and BCG do not escape the endosome. This suggests that DNA release, mediated by premature lysis, is not a limiting factor in gene transfer to mammalian cell nuclei. This observation, combined with the effect of copy number and the inhibitory influence of Esx-1, also indicates that the mechanism of bactofection by M. smegmatis is fundamentally different than the mechanisms studied previously.
Consistent with our prediction that hyperconjugation in mycobacteria would correlate with an enhanced ability to transfer genes to mammalian cells, a significantly (albeit only 1.7-fold) higher frequency of GFP expression was observed in HeLa cells infected with a hyperconjugating mutant of M. smegmatis (11) than in cells infected with the wild-type parent. This effect was suppressed by genetic complementation of the mutant strain with the Esx-1 region from M. tuberculosis, suggesting that, similar to conjugation between mycobacteria, the Esx-1 apparatus secretes proteins that inhibit gene transfer to mammalian cells. We currently have no definitive explanation for why the presence of the M. tuberculosis Esx-1 apparatus would suppress bactofection to almost background levels. One possibility is that the M. tuberculosis locus encodes proteins not present in M. smegmatis which have a greater inhibitory effect on bactofection.
To distinguish between EsxA and EsxB inhibition and other effects of Esx-1 on bactofection, the two genes encoding EsxA and EsxB were deleted; wild-type levels of bactofection were observed (Fig. 5). This suggests that another protein(s) secreted by M. smegmatis Esx-1 normally suppresses bactofection or that the apparatus itself interferes with plasmid transfer. Disruption of the entire locus would prevent either structural interference or secretion of other proteins and thus allow elevated levels of bactofection. An M. smegmatis strain that contains a mutation that reduces its conjugation efficiency 1,000-fold was still able to transfect cells (although at reduced levels), suggesting that the conjugation system supports—but is not necessary for—the release of DNA into the host cell by mycobacteria.
The plasmid-encoded RepA and RepB proteins were overexpressed from the hsp60 promoter to increase the pAL5000 copy number. Attempts by other workers to overexpress the pAL5000 Rep proteins in trans from a second episomal plasmid (39) in M. smegmatis resulted in a less-than-twofold increase in pAL5000 copy number. By contrast, we observed that overexpression of copies of repA and repB in trans from the chromosome consistently resulted in a 5- to 10-fold increase in the copy number of pAL5000-based plasmids in M. smegmatis. In addition, the episomal plasmid was maintained stably in both the exponential and stationary phases of bacterial growth (data not shown). The most likely explanation for the difference in these and previous results is the location of the repAB genes supplied in trans. In the RepHigh strains 155AB, 155A, and 155B, integration of the repAB genes into the chromosome ensured their constitutive and stable expression. By contrast, introducing a second plasmid also encoding RepAB may result in plasmid incompatibility, a lower copy number of both plasmid types, and inevitable plasmid loss.
pAL5000 encodes a negative regulatory circuit, which appears to control mRNA synthesis of RepA and RepB (38) from the native promoter. One explanation for our inability to recover BCG clones, which overexpress the Rep proteins from the constitutive Hsp60 promoter, is that these proteins are toxic or interfere with replication of slowly growing mycobacteria, such as BCG. Indeed, we consistently observed that RepHigh M. smegmatis strains exhibited a significantly lower in vitro growth rate than the RepWt strain (data not shown), suggesting that even in rapid growers RepAB overexpression exacts a toll on mycobacterial growth. We were surprised at the lack of an immune response induced by BCG(pHIgp120E). This may have been due to the relative inefficiency with which BCG induces apoptosis in infected phagyocytic cells compared to M. smegmatis. Of note, we observed that a markedly higher proportion of THP1 cell lines infected with M. smegmatis than of cells infected with BCG undergo apoptosis as detected by terminal deoxynucleotidyltransferase-mediated dUTP-biotin nick end labeling staining after 72 h (36.7 and 4.6%, respectively) (data not show). After M. smegmatis induces apoptosis in infected phagocytic cells in vivo, vesicles carrying plasmid DNA may be taken up by bystander antigen-presenting cells. The basis for the inferior immunogenicity of M. smegmatis harboring pHIgp120hE compared to that of M. smegmatis RepWt strain 155N(pgp120hE) is not known. One possibility is that the episomal plasmids are maintained more stably in the former strain in vivo, resulting in a lower efficiency of plasmid transfer to macrophages; unlike pMV261, p16R1 and its derivative pHIGH100 has the full-length rap (14). This may lead to increased stability of the plasmid in mycobacteria.
No naturally occurring mycobacterial plasmid has been observed to be maintained at a level of more than five copies per bacterium on average. To our knowledge, this work demonstrates, for the first time, that plasmid replication to obtain
30 copies per bacterium can be achieved in mycobacteria by overexpression of copies of repA and repB in trans from the chromosome. Furthermore, the higher copy number is stably maintained in vitro and is associated with enhanced eukaryotic gene transfer into mammalian cells both in vitro and in vivo. The use of RepHigh strains should reduce, by up to 10-fold, the amount of M. smegmatis cells required for plasmid extraction compared to the amount of wild-type cells. This expands the utility of M. smegmatis as a surrogate system for the manipulation and study of genes from M. tuberculosis and other slowly growing mycobacteria. The effect of Rep overexpression in M. smegmatis hyperconjugation mutants or M. smegmatis strains that harbor pHIGH100 on plasmid copy number and transfection efficiency will be studied in future experiments; we anticipate that it should increase the efficiency of gene transfer further. Also, the effects of immunization with mutant strains of BCG or attenuated M. tuberculosis strains that induce apoptosis in phagocytes will be studied.
M. smegmatis and M. bovis BCG have the advantage of being strong adjuvants compared to other attenuated bacterial vectors. Moreover, BCG, which is given to more than 85% of infants worldwide (1), is well tolerated and can be taken orally, making it an attractive vector for recombinant and/or DNA vaccines against other pathogens in neonates. In this context, it is noteworthy that BCG is one of the few vaccines used in humans that elicit strong Th1-type responses against heterologous and homologous antigens in infants (25). It has been demonstrated previously that M. smegmatis harboring plasmids encoding HIV gp120, expressed from a mycobacterial alpha-antigen promoter, generated T-cell responses in mice (5, 47) and primed for protein boosts of anti-Env neutralizing antibodies (47). This encourages the view that recombinant M. smegmatis should be further developed as a vaccine vector against HIV. The frequencies of gp120-specific CD8+ T-cell responses observed after immunization with strain 155AB(pgp120hE) were significantly lower than those observed after intramuscular immunization with pgp120hE; however, the former method may generate more durable memory T cells, as has been observed after immunization with recombinant M. smegmatis expressing a recombinant antigen compared to intramuscular DNA vaccination (20). In future studies we will study the effects of dual priming with recombinant mycobacteria that express antigens as well as harbor a transgene that encodes a eukaryotic gp120 expression cassette.
We have identified bacterial genetic components that affect either conjugation or plasmid copy number and that enhance mycobacterial bactofection in vivo. In the future we will focus on a genetic approach to isolate mutants that increase the efficiency of mycobacterial bactofection and provide insight into the mechanism of gene transfer. Mycobacterial bactofection is a promising vaccination method with the potential for having a great impact on controlling infections that affect young infants and for which no vaccines exist (e.g., breast milk HIV transmission and respiratory syncytial virus) or for which existing vaccines are limited (e.g., live-attenuated measles vaccine, due to interference by passive maternal antibody).
This work was supported by National Institutes of Health grants PO1 AI052816, U54 AI057158, R01 AI042308, and R21 EB004165 and by the Center for AIDS Research at the Albert Einstein College of Medicine (grant NIH AI-51519).
Published ahead of print on 30 July 2007. ![]()
Y.M. and N.M.Q. contributed equally to this work. ![]()
Present address: PeerView Institute for Medical Education, 315 Bleecker Street, Suite 182, New York, NY 10014. ![]()
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