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Infection and Immunity, March 2007, p. 1237-1244, Vol. 75, No. 3
0019-9567/07/$08.00+0 doi:10.1128/IAI.01416-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Leibniz Institute for Natural Product Research and Infection Biology (HKI) and Friedrich-Schiller University Jena, Beutenbergstr. 11a, 07745 Jena, Germany,1 Aspergillus Unit, Institut Pasteur, 25 Rue du Dr. Roux, 75724 Paris, France,2 Histopathology Unit, Institut Pasteur, 25 Rue du Dr. Roux, 75724 Paris, France3
Received 3 September 2006/ Returned for modification 10 October 2006/ Accepted 10 December 2006
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Investigations of glyoxylate cycle mutants of human-pathogenic microorganisms, i.e., both the bacterium Mycobacterium tuberculosis and the yeast Candida albicans, which carried a defect in the isocitrate lyase coding region, revealed a strong attenuation in virulence (15-17, 19). Therefore, it was concluded that fatty acids and lipids account for the major carbon sources during growth of these microorganisms in infected tissues (2). It was also assumed that blocking of the lipid metabolism might be a suitable goal for new antimicrobial compounds.
In a recent study, we investigated the isocitrate lyase from A. fumigatus in order to study the presence of the enzyme under various growth conditions (9). It was shown that isocitrate lyase is already present in conidia but is rapidly lost when the fungus grows on media which do not require the glyoxylate cycle for anaplerotic synthesis of oxaloacetate. Coincubation of conidia and macrophages showed a strong specific immunofluorescence for isocitrate lyase in the hyphae of early germlings inside the macrophages. Additionally, the use of 3-nitropropionate, a specific inhibitor of the isocitrate lyase, inhibited germination of conidia on media containing acetate as the sole carbon source, which confirms the essential role of isocitrate lyase to support growth on C2-generating carbon sources. We therefore concluded that an A. fumigatus mutant carrying a deletion of the isocitrate lyase coding region would also display attenuation in virulence in cases in which lipids or fatty acids provide a major carbon source during invasive aspergillosis (9).
To prove this assumption, we generated a specific isocitrate lyase knockout mutant of A. fumigatus and studied its phenotype under various in vivo and in vitro conditions.
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akuB wild-type strain, agar plates contained 0.6 M KCl and 240 µg/ml hygromycin B. For animal experiments, malt extract agar was inoculated with conidia and incubated at room temperature for 7 days. The conidial suspensions used in all experiments were filtered through a 40-µm cell strainer (BD Bioscience, Heidelberg, Germany), and the number of conidia was counted prior to use. Concentrations of carbon sources utilized in phenotypic analysis were used as described for the single experiments. Analysis of conidial germination was performed with four-well LabTek chamber slides (Nalge Nunc International, New York) containing 500 µl of medium. The following media were used: Sabouraud-2% dextrose broth (Merck KGaA, Darmstadt, Germany) and Aspergillus minimal medium (http://www.fgsc.net/methods/anidmed.html) with 50 mM glucose, 10% cell culture qualified fetal calf serum (Invitrogen), 100 mM glycerol, or 100 mM acetate as the carbon source. Additionally, germination was monitored in Aspergillus minimal medium with 50 mM acetate and various concentrations of peptone (Applichem GmbH, Darmstadt, Germany) ranging from 0.1 to 1%. The peptone was free of glucose as determined by a glucose oxidase-peroxidase-ABTS [2,2'-azinobis(3-ethylbenzthiazolinesulfonic acid]-based assay as described previously (4). The media were inoculated with 50,000 conidia and incubated at 37°C for the times indicated (see Fig. 4). Bright-field microscopy was carried out with a Leica DM4500 B fluorescence microscope which was equipped with a Leica DFC 480 camera. For determination of isocitrate lyase activity from peptide- and lipid-containing media, 1% peptone, 0.5% olive oil (Fluka, Steinheim, Germany), or a mixture of both was used. Replicates of 100 ml of medium in 250-ml flasks were inoculated with a final concentration of 1 x 106 conidia/ml and were incubated for at least 20 h.
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FIG. 4. Growth analysis of the wild type and an isocitrate lyase deletion mutant on different carbon sources. (A) Representative sections from chamber slide wells are shown. Carbon sources and the times of incubation are indicated on the left. (B) Growth analysis of the wild type and a deletion strain in the presence of 50 mM acetate (A 50) and different concentrations of peptone (P). The growth time was fixed to 7.5 h. (C) Coomassie blue-stained sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot analyses of the wild type grown on 1% (wt/vol) peptone (lanes 1), 1% (wt/vol) peptone plus 0.5% (wt/vol) olive oil (lanes 2), and 0.5% (wt/vol) olive oil (lanes 3). Lanes C, purified isocitrate lyase taken as a control. The values (mU/mg) mark the isocitrate lyase activities determined from the cell extracts.
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akuB strain. Transformation of protoplasts was performed by standard procedures (11). Transformants were preanalyzed based on their inability to grow on ethanol as the sole carbon source and further checked by Southern analysis (22). Genomic DNA was isolated by use of the MasterPure yeast DNA purification kit (Epicenter Biotechnologies, Wisconsin) and restricted with EcoRI. A digoxigenin-labeled probe on the upstream region was amplified from the plasmid carrying the deletion construct with the oligonucleotides BglAFIclup and AfPICLATG_Bam (5'-GGA TCC CAT TGT GAC AGG TAT G-3') and used in hybridization. Hybridized DNA fragments were visualized by CDP-Star as recommended by the manufacturer (Roche Diagnostics).
For complementation of the
acuD Af8B1 and
acuD Af12C1 independent deletion strains, a PCR fragment was amplified from genomic DNA of the
akuB strain using the oligonucleotides AfPICL_upst_Bam (5'-GGA TCC GAA GGA CAG GAA C-3') and BglAFIcldown and directly used for transformation of protoplasts. The resulting transformants were selected by plating the protoplasts on media containing ethanol as the sole carbon source. As described above, genomic DNA was isolated, restricted with EcoRI, and analyzed by Southern blotting with the probe against the isocitrate lyase upstream region.
Enzyme activity and Western blot analysis. Isocitrate lyase activity was monitored by a phenylhydrazine-based assay, as described earlier (9), using a millimolar extinction coefficient for glyoxylate-phenylhydrazone of 16.8 mM1 cm1. The cultures were grown in duplicate, and the enzyme activities were determined with two separate amounts of enzyme from each extract. All activities were in a range of ±5% from the mean values, which are presented in Results. Western blot analysis of crude cell extracts from different A. fumigatus strains was performed by running 12.5 µg total protein of each strain on a precast NuPAGE 4 to 12% Bis-Tris gel (Invitrogen) and subsequent blotting on a polyvinylidene difluoride membrane (Millipore, Schwalbach, Germany). A specific anti-isocitrate lyase antibody, E30-F8, was used and, as a secondary antibody, an alkaline phosphatase-conjugated anti-mouse immunoglobulin G from a rabbit was employed. Staining was done with a mixture of nitroblue tetrazolium and 5-bromo-4-chloro-3-indolylphosphate, as described by the manufacturer (Pierce, Bonn, Germany).
Animal model and histopathology.
For investigation of the virulence of the isocitrate lyase mutant, mouse survival experiments were carried out almost exactly as described earlier (12). In brief, the virulence levels of the
akuB wild-type strain and the complemented strain were compared to that of a
acuD strain. Cohorts of 10 male Swiss OF1 mice (6 to 8 weeks old) were immunosuppressed by intraperitoneal injection of cortisone acetate (25 mg/mouse) 3 days prior to and on the day of infection. For intranasal infection, mice were anesthetized with 0.1 ml of a mixture of ketamine (10 µg/ml; Merial) and xylazine (2 µg/ml; Bayer) by intramuscular injection. A 20-µl suspension containing 1 x 105 conidia in phosphate-buffered saline (PBS)-0.1% Tween 80 was applied to the nares of each mouse, and survival was monitored for 14 days. For controls, 10 mice were immunosuppressed and infected with PBS without conidia. The lungs from the mice which died from infection on day 5 were removed in order to prepare tissue thin sections. Control mice, which did not receive conidia, were sacrificed, and the lungs were removed. After being stained with hematoxylin and eosin stain and with Gomori-Grocott methenamine silver nitrate (1, 24), tissue sections were analyzed by using bright-field microscopy at a 40-fold magnification. From these sections, the inflammation indices and fungal burdens were evaluated. The inflammatory and fungal invasion indices were determined by comparing the number of inflammatory foci with the number of foci of the whole lung. The index of inflammation was classified between 0 and 5, with 5 being the classification for the more-severe lesions (1,
20%; 2, 20 to 40%; 3, 40 to 60%; 4, 60 to 80%; 5, 100%). As done for the inflammatory index, the fungal invasion index was graduated between 1 and 5, with the following classification: 1, few hyphae around the bronchi; 2, several foci of hyphae limited to the periphery of the bronchi and blood vessels; 3, invasive aspergillosis in which the hyphae were observed to cross the vascular wall and extend to the alveolae; and 4 to 5, severe invasive aspergillosis with massive hyphal invasion resulting in the necrosis of the whole lung.
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akuB strain.
For deletion of the acuD gene from A. fumigatus, the
akuB strain was used; this strain contains a deletion in the KU80 gene, which is responsible for the nonhomologous end-joining repair mechanism. Deletion of the KU80 gene results in a strain that preferably integrates DNA homologously into the genome. Because virulence of the
akuB strain is not attenuated, it was used as a wild-type control strain in subsequent investigations (5).
The hygromycin B resistance cassette flanked by a 908-bp 5' upstream and a 782-bp 3' downstream fragment of the acuD gene was used for transformation of protoplasts of the
akuB strain. Transformation yielded several hundred colonies, and 36 transformants were tested for their ability to grow on ethanol or glucose when they were used as the sole carbon and energy sources. Neither of the transformant strains grew on ethanol, but all strains grew without a phenotype when glucose was used. Seven strains were selected for Southern analysis (Fig. 1A). All of these strains showed a deletion of the acuD gene. Two of these strains contained an additional copy of the deletion construct and were not used for further studies (Fig. 1B). Complementation of two independent isocitrate lyase deletion strains was performed by reintroducing the acuD gene as well as the promoter and the downstream region. Due to the
akuB background of the isocitrate lyase mutant, we expected a homologous integration into the original acuD locus to be accompanied by a loss of hygromycin B resistance. Therefore, transformants were selected by their ability to grow on ethanol when it was used as the sole carbon and energy source. Again, several hundred colonies were obtained. The possibility of contamination during the transformation by wild-type strains was excluded by the fact that the negative control, which contained water instead of DNA, yielded no colonies. Three strains from each transformation were selected for Southern analysis. All strains showed a single integration of the PCR fragment into the acuD locus (Fig. 1C). A comparison of the phenotypes for a selected isocitrate lyase mutant, corresponding complemented mutant strains, and the wild-type
akuB strain is shown in Fig. 1D. The isocitrate lyase deletion strains were unable to grow on ethanol, but these were the only strains which grew on glucose in the presence of hygromycin B. When glucose was used as the sole carbon source, no phenotypes were observed, and all complemented strains behaved exactly like the wild type behaved.
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FIG. 1. Deletion and reintroduction of the isocitrate lyase gene. (A) Scheme of the genomic situation at the acuD locus in the wild type, a complemented deletion mutant, and a deletion mutant. Restriction with EcoRI results in a 7.96-kb fragment for both the wild-type and the complemented strains and a 4.24-kb fragment for the mutant when the probe is hybridized to the upstream region. (B) Southern blot analysis of genomic DNA of the wild-type strain and the independent acuD deletion mutants. The shift of the fragment is indicated by an arrow. (C) Southern blot analysis of the deletion strains complemented with the acuD gene. Bands characteristic of the acuD deletion strain and the wild type are indicated by arrows. (D) Growth analysis of the wild type, an isocitrate lyase mutant, and four complemented strains. WT, wild type; , isocitrate lyase deletion strain; R, complemented strains.
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FIG. 2. Western blot analysis and determination of isocitrate lyase activity. (A) The upper panel shows a Coomassie blue-stained sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel of cell extracts of isocitrate lyase deletion mutants and the wild type ( akuB WT) grown on a glucose-acetate medium. The lower panel shows the respective Western blot analysis performed by use of the specific anti-isocitrate lyase antibody E30F8. As a control, purified isocitrate lyase was loaded (Icl control). Numbers below the panels indicate the specific isocitrate lyase activities which were determined for each extract. (B) Same as for panel A, but in addition to the wild-type and deletion strains, several complemented strains were investigated.
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Conidial suspensions from the fifth generation of the isocitrate lyase
acuD Af12C1 deletion mutant, the fourth generation of the complemented 12C1RC2 strain, and the
akuB wild-type strain were freshly prepared and applied using intranasal infection. Early generations of the mutant and the complemented strain were used for this analysis in order to avoid secondary mutations, which could occur in a
akuB background. Figure 3A shows the survival curves recorded over a period of 14 days. A comparison of the curves revealed that the isocitrate lyase mutant showed at least the same ability to kill the mice as the wild type or the complemented strain did. Additionally, 5 days after infection, the lung sections from mice infected with the wild type, the mutant, and the complemented strain revealed indices of inflammation and of fungal invasion of 3.5 to 4, with a hemorrhagic necrosis and strong fungal invasion of the lung tissues (Fig. 3B). Therefore, we conclude that a deletion of isocitrate lyase from A. fumigatus does not reduce its ability to manifest as invasive aspergillosis.
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FIG. 3. Animal model for invasive aspergillosis. (A) Survival curves of cortisone acetate-treated Swiss OF1 mice (in cohorts of 10 mice each) infected with 1 x 105 conidia from the wild type (WT), with the acuD 12C1 deletion strain, with the complemented 12C1RC2 strain, and with PBS as a control. (B) Histopathology of lung tissue sections 5 days after infection. All lung sections shown in panel B derive from the animal experiment described for panel A.
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Large amounts of acetate, as used in this experiment, may be easily taken up by the mycelium and may, therefore, serve as the major carbon source. This assumption could explain the slight growth inhibition which is visible even in the presence of peptone. However, although the presence of large amounts of acetate in infected lung tissues is unlikely to occur, it is likely that a mixture of proteins and lipids or fatty acids is present. Therefore, we were interested in the isocitrate lyase activity of the wild-type strain when grown on peptone with or without the addition of olive oil as a source of lipids and fatty acids. Western blot analysis and specific isocitrate lyase activities are shown in Fig. 4C. However, the basal activity with peptone used as the carbon source, at 12 mU/mg, was higher than that with glucose (<1 mU/mg) (9). Activity increased only slightly in the presence of lipids (34 mU/mg). In the absence of peptone, the isocitrate lyase activity was high (223 mU/mg), indicating that isocitrate lyase is important for the metabolism of lipids when applied as the sole carbon source. This finding was confirmed by growing the isocitrate lyase mutant on peptone, peptone-olive oil, and olive oil as the sole carbon source. The deletion strain did not grow when olive oil was used as the sole carbon and energy source (not even after 144 h), whereas no phenotypes were observed on peptone alone or on the mixture of peptone and olive oil. These results show that the presence of both peptone and olive oil does not necessarily require isocitrate lyase, because peptone seems to be sufficient for replenishing the oxaloacetate pool.
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Most interestingly, we were able to show that isocitrate lyase is not important for the development of invasive aspergillosis in a murine infection model. This result was rather unexpected, because it was generally believed that lipids and fatty acids serve as one of the major carbon sources during the infection process and that the glyoxylate bypass is needed to avoid a shortage of oxaloacetate. This assumption was supported by the results obtained with isocitrate lyase mutants of various microorganisms, including both human and plant pathogens. Deletion of the two isocitrate lyases present in M. tuberculosis, which can substitute for each other, led to the rapid elimination of bacteria from the lungs and to the impairment of intracellular replication (19). Deletion of the single isocitrate lyase from C. albicans led to a strong attenuation in virulence in a murine infection model (15, 16), and furthermore, the plant-pathogenic fungi Leptosphaeria maculans (13) and Magnaporthe grisea (28) displayed significantly reduced virulence levels when the isocitrate lyase gene was deleted.
In our study, we used a corticosteroid-based immunosuppression model in order to test the A. fumigatus isocitrate lyase mutant for its virulence. Although this system does not cause neutropenia, it is suitable as a model for invasive aspergillosis. In our cortisone acetate immunosuppression system, mice infected with wild-type, isocitrate lyase mutant, or isocitrate lyase-complemented strains died from invasive aspergillosis. Although a severe inflammatory response accompanied by a massive recruitment of neutrophils to the lung tissue occurs under cortisone acetate immunosuppression, a dramatic decrease in the production of tumor necrosis factor alpha (TNF-
) has been observed (8). TNF-
is supposedly essential for the induction of protective immunity against A. fumigatus (18). However, in a neutropenic model, although large amounts of TNF-
have been found in the bronchoalveolar lavage fluids of infected mice, this cytokine was not efficient to prevent the development of invasive aspergillosis (1). Therefore, in both corticosteroid-based and neutropenic immunsuppression models, extensive pulmonary invasion by growing hyphae occurs, and this results in the death of mice, caused by an acute cardiorespiratory insufficiency. Despite the differences in immune response, both models seem to be suitable to test the attenuation in virulence of Aspergillus mutants.
Due to the strong hyphal growth of our isocitrate lyase mutant, which was comparable to that of the wild type and the complemented mutant, we conclude that isocitrate lyase is not required for invasive growth of A. fumigatus. In agreement with this finding is the finding that isocitrate lyase from another pathogenic fungus, Cryptococcus neoformans, was shown not to be required for pathogenesis (21). In C. neoformans, isocitrate lyase was first thought to represent a putative target for antifungal drugs, because the gene was found to be up-regulated when reisolated from a rabbit infection model 7 days postinfection. This was explained by the fact that immune effector cells, like macrophages, at that time acquire their maximum activation state for fungicidal activity, which leads to phagocytosis of yeast cells and subsequent activation of isocitrate lyase because of lipids which are present in macrophages. Disruption of the isocitrate lyase coding region, however, revealed that this had no effect on virulence when the mutant strain was tested in a murine inhalation model for cryptococcosis.
Therefore, we can conclude that, although lipid-specific Nile red staining of the macrophages confirmed the presence of large lipid loads (9), isocitrate lyase is also not required for development of invasive aspergillosis. This could be explained by the fact that the macrophages may contain not only lipids but also proteins or carbohydrates. Furthermore, germinating conidia grow for only a short time within the macrophages, because the elongating hyphae destroy them (27). This makes available alternative carbon sources like proteins, which are released from the surrounding tissue during invasive growth, and leads to the assumption that isocitrate lyase may, in the macrophages, be required only for long-term persistence. This is also supported by investigations of the pathogenic bacterium Salmonella enterica serovar Typhimurium (10). An isocitrate lyase mutant of this bacterium shows no reduction in acute virulence. However, when long-term persistence in the macrophages was examined, the wild-type strain was able to persist in the macrophages, whereas the isocitrate lyase mutant was progressively cleared. Whether the persistence of A. fumigatus conidia also plays a role in the infection of humans has not yet been investigated. It therefore remains unclear whether all cases of invasive aspergillosis derive from a "de novo infection" with conidia taken up from the environment or from persisting conidia which start to germinate when the immune system becomes suppressed.
We showed that during cometabolism of proteins and lipids, isocitrate lyase is hardly induced and, therefore, may not be required for anaplerosis of oxaloacetate. Additionally, immunostaining of isocitrate lyase in the tissues of patients suffering from an invasive fungal infection revealed only negative results (Frank Ebel, Max von Pettenkofer Institute, Munich, Germany, personal communication). Theoretically, the possibility that the antibodies were unable to detect isocitrate lyase in the tissue sections after they were fixed and embedded in paraffin cannot be excluded. However, the fact that the antibodies worked well on infected and formaldehyde-fixed macrophages, and that they clearly showed the presence of isocitrate lyase (9), seems to exclude this possibility.
We conclude that isocitrate lyase, and hence the glyoxylate cycle, is not required for the virulence of A. fumigatus in the murine infection model. Therefore, from our results, isocitrate lyase does not represent an antifungal drug target. Furthermore, results show that even among different fungal species infecting human tissues, diverse metabolic pathways are required. Although lipids may be consumed during invasive growth of A. fumigatus, they do not provide the major carbon source. Hence, it seems very likely that proteins released from the host tissue represent at least one additional carbon source supporting the growth of A. fumigatus during invasive aspergillosis. This hypothesis is currently being tested.
This work was supported by grant BR 2216/1-4 from the Deutsche Forschungsgemeinschaft to M.B. and by grants from the Aspergillus Unit of the Institute Pasteur and from the Programme Transversal de Recherche: Aspergillus fumigatus and the Alveolar Macrophage to O.I.-G.
Published ahead of print on 18 December 2006. ![]()
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