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Infection and Immunity, June 2007, p. 2946-2953, Vol. 75, No. 6
0019-9567/07/$08.00+0 doi:10.1128/IAI.02011-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland
Received 22 December 2006/ Returned for modification 22 February 2007/ Accepted 30 March 2007
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A trafficking pathway for PT has been proposed based on the trafficking events of similar exotoxins, since the manner in which PT translocates within the mammalian cell in order to reach its target G proteins is still unresolved. It has been determined that PT holotoxin enters the cell by endocytosis (12, 51, 52). However, there is some evidence to suggest that several bacterial exotoxins are subject to retrograde transport by way of the Golgi apparatus to the endoplasmic reticulum (ER) (27, 37). There is some limited experimental evidence to support the subsequent retrograde transport of PT to the Golgi postinternalization by endocytosis. The cytotoxicity of PT has been shown to be inhibited by the treatment of mammalian cells with brefeldin A, a compound that disrupts the Golgi apparatus (17), and subcellular fractionation experiments have been performed in which PT was detected in this compartment (12, 51, 52). The trafficking of PT after its arrival in the Golgi has yet to be elucidated and is currently being investigated in our laboratory.
The ER-associated degradation (ERAD) pathway allows for the removal and degradation of misfolded proteins from the ER (3). This pathway involves the transport of substrates, in an unfolded form, out of the ER, possibly via the retrotranslocation pore-forming protein Derlin-1 (28, 55). There is accumulating evidence that other AB toxins (e.g., cholera toxin [CT], Escherichia coli heat-labile toxin, Shiga toxin, and ricin) traffic in a retrograde manner by way of the ERAD pathway (27). There is increasing evidence that other similar toxins exit the ER via the Sec61 translocon (32, 34, 35, 39, 41, 49, 56). Once ERAD substrates enter the cytosol, they are polyubiquitinated, the site of ubiquitination being lysine residues in the target protein. Ubiquitination is the signal for targeting of the substrate to the 26S proteasome, where degradation occurs (31). Since S1 (and the enzymatically active A subunit of other toxins) reaches target proteins located in the host cell cytosol, it must avoid proteasome degradation. However, there are also examples of ubiquitin-independent proteasomal degradation (13, 40, 48). It is noteworthy that toxins that translocate out of the ER have very low numbers of lysine residues compared with toxins that traffic in other pathways (such as diphtheria toxin), and this is illustrated in Fig. 1. We hypothesize that the absence of lysine residues in the S1 subunit of PT allows the toxin to avoid ubiquitination and subsequent proteasomal degradation. Recently, it has been demonstrated that the addition of lysine residues to ricin and CT brings about their degradation by the proteasome and reduces their cytotoxicity (10, 11, 27).
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FIG. 1. Comparison of numbers of lysine residues in the active subunits of various exotoxins. The protein sequences of the active subunits of various AB toxins are listed, and lysine residues are highlighted in black. The A subunit of PT is distinguished by the absence of lysine residues, and the active subunits of other toxins that traffic via ERAD have a paucity of lysines, unlike diphtheria toxin, which has a large number of lysine residues and traffics by way of a different pathway.
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In this study, mutations were made at various locations on the S1 subunit, replacing arginine with lysine residues at one, two, and three positions. More than one lysine was substituted in a number of variants since it is possible that the signal or trigger for ubiquitination may require more than one lysine residue. The in vitro and cellular activities of these variant toxins were determined by an ADP-ribosylation assay. The effect of proteasome inhibitors on variant toxins was also determined in this manner.
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For cloning experiments, E. coli DH10B was used, and for conjugation with B. pertussis, the E. coli strain SM10 was used. These strains were grown either in LB broth containing 100 µg ml–1 ampicillin, if required, or on LB agar plates containing 10 µg ml–1 gentamicin.
The wild-type B. pertussis strain used in these experiments was an Strr Nalr derivative of W28 (Wellcome), and the strain bearing the enzymatically inactive toxin, denoted PT* (PT9K/129G), was constructed as previously described (33). The lysine variant toxins were derived as described below.
Construction of lysine variant toxins. The location of arginine residues for replacement with lysine residues was selected based on the crystal structure of PT (and S1 in particular) and the distance from the enzymatic core of the protein, such that the folding and function of the protein would probably not be affected due to the change in amino acid affecting the overall conformation. Substitution mutations were constructed by overlap extension PCR (21). The positions of the altered residues are listed in Table 1. Variant S1 was also constructed by replacing the arginine residues with alanine residues at positions 79 and 117, as a control, to confirm that the change in activity was due to the addition of lysine and not a loss of the arginine residues.
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View this table: [in a new window] |
TABLE 1. Summary of in vitro and cellular ADP-ribosyltransferase activities of PT with various arginine-to-lysine substitutionsa
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The terminal 20 amino acids of Gi
3 protein fused to glutathione S-transferase (GST) (GST-
C20) were purified from a culture of E. coli DH10B containing the plasmid pGEX-
C20. Expression of the fusion protein was induced and then purified as previously described (7). Recovered proteins were analyzed by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis, Western blotting, and a bicinchoninic acid assay (Pierce) to determine the concentration.
In vitro ADP-ribosyltransferase assays.
The substrate GST-
C20 was used as the target in an ADP-ribosylation assay modified from that of Xu and Barbieri (52). In a 25-µl final volume, the following reagents were added to a 1-µl aliquot of substrate: 0.1 M Tris HCl, pH 7.5, 20 mM dithiothreitol, 0.1 mM ATP, 0.1 µM [32P]NAD (specific activity, 30 Ci mmol–1; PerkinElmer), and 10 ng variant PT. Reagents were incubated at room temperature for 90 min, and then the reaction was halted by the addition of sample buffer. Reaction mixtures were loaded onto a 15% Tris HCl SDS gel (Bio-Rad). Postelectrophoretic separation gels were fixed for 30 min in fixer 1 (27% methanol, 4% acetic acid) and 30 min in fixer 2 (2% glycerol, 1 M sodium salicylate), then dried, and exposed to film.
Cellular ADP-ribosyltransferase assays. Near-confluent CHO cells treated exogenously with variant PT (for 3 h) or transfected CHO cells were harvested from 12-well plates by using a trypsin-like solution (TrypLE Express; Invitrogen). Recovered cells were washed in 1x phosphate-buffered saline to remove any media and then lysed by incubation on ice for 30 min in 0.5% Triton X-100 lysis buffer (150 mM NaCl, 5 mM EDTA, 50 mM Tris HCl, pH 7.4, 0.01% NaN3, and 0.5% Triton X-100). The resulting lysate was subjected to centrifugation at 13,000 rpm for 15 min; the supernatant was recovered (postnuclear supernatant [PNS]), transferred to sterile Eppendorf tubes, and stored at –20°C until required.
The resultant PNS was used in an ADP-ribosylation assay modified from that of Xu and Barbieri (52). In a 25-µl final volume, the following reagents were added to an aliquot (between 15 and 19 µl) of the PNS: 0.1 M Tris HCl, pH 7.5, 20 mM dithiothreitol, 0.1 mM ATP, 0.1 µM [32P]NAD (specific activity, 30 Ci mmol–1; PerkinElmer), and 10 ng PT. Reagents were incubated at room temperature for 90 min, and then the reaction was halted by the addition of sample buffer. Reaction mixtures were loaded onto a 15% Tris HCl SDS gel (Bio-Rad). Postelectrophoretic separation gels were fixed and dried as described above for the in vitro assay.
Band intensities from ADP-ribosyltransferase assays were determined by densitometry. These data were used to calculate the extent of ADP-ribosylation of target proteins by variant toxins compared to that by wild-type PT.
Proteasome inhibition assays. CHO or HeLa cells plated at 2.5 x 105 cells per well in 12-well plates were pretreated with either 20 nM clasto-lactacystin β-lactone (lactacystin; Sigma) or 10 nM epoxomicin (Sigma) and incubated for 1 h before cellular ADP-ribosyltransferase assays as described above.
Western blotting. Whole-cell lysate samples in loading buffer were run on 12% SDS-polyacrylamide gel electrophoresis gels and transferred onto either nitrocellulose or polyvinylidene difluoride membranes. For the detection of S1, filters were preincubated in blocking solution (5% nonfat milk powder in Tris-buffered saline-Tween 20) and then incubated with monoclonal antibody 1C7 or 2F2 specific to S1. This was followed by incubation with the secondary antibody peroxidase-conjugated anti-mouse immunoglobulin G (Amersham). Blots were detected using an enhanced chemiluminescence method (ECL Plus or ECL Advance; Amersham) and exposed to film (Biomax Light; Kodak).
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To determine suitable locations for these substitutions, the crystal structure of S1 and the holotoxin were examined (43) in order to place substitutions at locations that are surface exposed on S1 and not located within the catalytic site of S1. Overlap extension PCR was used to generate substitutions at the required locations (Table 1), and constructs were introduced into B. pertussis by conjugation. A control construct was also generated where arginine residues at positions 79 and 117 were replaced with alanine residues, and this construct was used to confirm that the reduction in cellular activity is not due to the loss of arginine residues but to the presence of lysines. All of the variant toxins generated were efficiently secreted, as determined by Western blotting (data not shown).
In vitro enzymatic activity of lysine variant PT toxins. The variant toxins were efficiently expressed and secreted in B. pertussis, as determined by Western blotting (data not shown). To confirm that the substitutions made in the variant PT molecules did not substantially affect the enzymatic activity of the proteins, in vitro ADP-ribosylation assays were conducted with the following variants: single substitutions R79K, R117K, R143K, and R181K, double substitutions R79K/R117K and R58K/R143K, and triple substitution R79K/R117K/R181K. Wild-type toxins in the form of both a commercially available source (Calbiochem) and our purified form (from W28) were used as positive controls, and the enzymatically inactive form of PT, termed PT* (PT9K/129G), was used as a negative control for the assay. All of the variants tested retained enzymatic activity at a level comparable to that of the wild-type toxin (Fig. 2), suggesting that the changes made to these variant proteins did not affect the enzymatic activity of the toxin. The activity of these variant toxins compared to that of the wild type was quantified by densitometry, using replicates from three independent in vitro ADP-ribosylation experiments. The results of this analysis are listed in Table 1; all toxins retained activity close to that of the wild type. The variant toxin with arginine-to-alanine substitutions at R79A and R117A (designed as a control to illustrate that the observed effects of lysine substitutions are due to the addition of lysine residues and not the loss of arginine) also retained enzymatic activity comparable to that of the wild-type toxin (Table 1).
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FIG. 2. (a) In vitro ADP-ribosylation analysis of various lysine variant PTs. Lysine variant proteins (1 nM) were incubated with purified G protein as per standard ADP-ribosylation protocol. Lanes: 1, wild-type PT (WT); 2, PT*; 3, R79K/R117K/R181K; 4, R58K/R143K; 5, R79K/R117K; 6, R143K; 7, PT*; 8, WT; 9, R79K; 10, R134K. Note that all variant toxins have activity comparable to that of wild-type PT. (b) Densitometry results of variant PT in vitro activity compared to that of wild-type PT. Analysis of in vitro ADP-ribosylation activity of variant PT toxins with one, two, or three lysine changes. Activity was measured by densitometry and compared to wild-type activity; data from three independent experiments are represented in this graph.
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FIG. 3. (a) Cellular ADP-ribosylation analysis of CHO cells treated with lysine mutant PT. Lysine variant proteins were incubated with CHO cells and the PNS generated as per standard cellular ADP-ribosylation protocol. Lanes: 1, wild type PT [WT]; 2, 1K (R181K); 3, 2K (R79K/R117K); 4, 3K (R79K/R117K/R181K); 5, 1K (R79K); 6, PT*; 7, untreated CHO PNS without PT; 8, untreated CHO PNS with PT. The upper band (approximately 41 kDa) indicates ADP-ribosylated G proteins and thus a loss of activity of the variant toxin. The lower band is PT independent and is present in all lanes, including the control without PT. (b) Cellular ADP-ribosylation analysis of CHO cells treated with lysine mutant PT. Cellular ADP-ribosylation of G proteins in CHO cells following treatment with variant PTs with one, two, or three lysine substitutions. The assay was conducted as described in Materials and Methods; data from three independent experiments are represented. Statistical analysis by a t test indicated that the reductions in activity for the double and triple mutants were statistically significant: P = 0.024 and P = 0.0015, respectively.
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FIG. 4. (a) Inactivation of the proteasome with the inhibitor lactacystin allows for the recovery of lysine variant PT activity, as determined by cellular ADP-ribosylation. Cellular ADP-ribosylation analysis of CHO cells treated with variant PT toxins in the presence and absence of the proteasome inhibitor. UT indicates no proteasome treatment; L indicates treatment with 20 nM lactacystin. 1K, R181K; 2K, R79K/R117K; 3K, R79K/R117K/R181K; WT, wild-type S1 (W28); PT*, enzymatically inactive PT. Control ADP-ribosylation reactions were performed using the PNS from CHO cells without prior PT treatment, which was incubated with (+PT) or without (–PT) PT in the in vitro step of the assay. The UT CHO +PT lane illustrates the band intensity for untreated CHO cells. The UT CHO –PT lane illustrates that the lower band represents a PT-independent event. (b) Effect of proteasome inhibitor on the activity of lysine variant PT in CHO cells, as determined by densitometry. Cellular ADP-ribosylation of CHO cells treated with lysine variant PTs in the presence and absence of proteasome inhibitor. Data from five independent experiments are summarized in this figure. Data were analyzed for statistical significance by a t test, and the recovery of activity for the triple variant upon the addition of proteasome inhibitor was significant: P = 0.003.
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Having demonstrated that the replacement of arginine residues with lysine brings about a reduction in cellular activity, we generated evidence that strongly suggests that the loss of S1 activity observed in these variants was due to proteasomal degradation, presumably brought about by the introduction of a site(s) for ubiquitination and hence targeting to the proteasome. When CHO cells were treated with an irreversible proteasome inhibitor prior to treatment with exogenously applied variant PT, a recovery in cellular activity, as determined by an ADP-ribosylation assay, was observed. Some variants with single lysine changes exhibited activity approaching that of wild-type S1. At least twofold recovery of activity was seen in most variant S1 toxins in the presence of proteasome inhibitors. The greatest effect was observed with the triple-lysine variant, which had little cellular activity; however, upon the addition of the proteasome inhibitor, this toxin yielded significant cellular activity. Incomplete recovery of activity in proteasome inhibition experiments may have been due to only partial inactivation of the proteasome, resulting in some residual degradation activity. Evidence for this incomplete inhibition of degradation in some well-characterized ERAD substrates, e.g., the cystic fibrosis transmembrane conductance regulator, has previously been observed (18, 23).
Alternatively, the ubiquitination of the variants alone could alter the enzymatic activity of the toxin, either by a conformational change or by a change in its ability to traffic via usual pathways and hence reach target G proteins. This incomplete recovery of cellular activity may be a result of lysine variant toxins exiting the ER less efficiently than wild-type S1. Until we have a reagent that inhibits the exit of PT from the ER, we cannot completely define the trafficking pathway of PT in the mammalian cell.
The hypothetical trafficking pathway of PT has yet to be completely elucidated, and some of this pathway is based upon evidence derived from work with other exotoxins with similar structures, such as E. coli heat-labile toxin, Shiga toxin, CT, and the plant toxin ricin. Hazes and Read (20) proposed an intracellular trafficking pathway for PT implicating the exploitation of the ERAD pathway. This model proposed that PT binds to cell surface receptors and that the holotoxin is internalized by endocytosis in a cytochalasin D-independent manner (12, 38, 51, 52). The work conducted in our study begins to address the events upon S1 entry into the cytosol.
The paucity of lysine residues in the AB5 exotoxins thought to traffic in a retrograde manner has been noted as a feature that may allow them to avoid targeting to the 26S proteasome and consequent degradation by this structure once they have been translocated into the cytosol from the ER, since lysine residues are sites for ubiquitination, the signal for targeting proteins to the proteasome (20). However, the proteasome is also able to recognize and degrade unubiquitinated proteins that are in an unfolded state (46). It has been demonstrated for CT that proteolysis of a fraction of the CT subunit A1 (CTA1) pool occurs despite a low number of lysine residues, suggesting a ubiquitin-independent mechanism of degradation (44). In the case of CT, it is likely that the paucity of lysine residues in combination with the rapid refolding of CT, which occurs upon entry into the cytosol, allows the toxin to reach its target G proteins and avoid proteasomal degradation in the cytosolic compartment (36). Recently, a ubiquitin-independent degradation pathway for S1 has been described, suggesting that the thermostability of S1 may have a significant effect on the retrotranslocation of this molecule (30). A model has been proposed whereby the heat-labile nature of the A subunits of some AB toxins (such as CT and ricin) is connected to both their translocation and degradation (45). S1 is a heat-labile protein, and its secondary and tertiary structures are disturbed at physiological temperatures, unlike the holotoxin and PT B oligomer, which are stable at this temperature. Studies suggest that once S1 has become dissociated from the B oligomer in the ER, it unfolds due to its temperature instability, which triggers ERAD and allows for the degradation of unfolded S1 by the 20S proteasome in a ubiquitin-independent mechanism (30). However, sufficient refolding of S1 must occur to allow activity in the cytosol.
It is interesting to note that while many of these exotoxins share similarities in structure and aspects of their retrograde trafficking pathways, there are some slight differences in their fate upon exit from the ER into the cytosol. The activity of wild-type CT is not enhanced by the addition of proteasome inhibitors (36); in contrast, the activity of wild-type ricin is enhanced in the presence of proteasome inhibitors (10). Ricin has a paucity of lysines, and a fraction of ricin is more efficiently targeted to the proteasome than is CT (10). It is possible that ricin is unable to refold as quickly as CT, exposing ricin posttranslocation to conditions favorable to polyubiquitination and proteasomal degradation for longer periods. Our results suggest that PT is more like CT than ricin in that the addition of proteasome inhibitors does not enhance the activity of wild-type PT and, in fact, a slight inhibition of activity is observed. Changing the number of lysine residues in these AB toxins has had similar effects in that the cytotoxicity of the variant toxin is reduced compared to that of the wild-type toxin since the variant has become a substrate for proteasomal degradation. The addition of lysines to the CTA1 chain brought about moderate degradation by the proteasome (36). Both CT and ricin differ from PT in that they contain some lysine residues. The replacement of lysines at two positions in CT with arginines had no effect on activity. The N-terminal region of CT is a potential target for ubiquitination, but blocking of this potential site by carbamylation also had no effect on the toxicity (36). Wild-type PT presumably folds rapidly in the cytosol, avoiding ubiquitin-independent proteasomal degradation.
Lysine residues were added to CT to examine their effect on degradation by substitution; reduced activity was observed in these variants to various degrees. This loss in activity could be recovered in all variant toxins by the addition of proteasome inhibitors (36). Interestingly, the defect in activity seen with the substitution of three lysine residues in PT was much more dramatic than the activity loss seen with CT and ricin variants.
Ricin, an rRNA N-glycosidase, reaches the ER only at low levels (15), and it has been shown that this toxin is not a substrate for ubiquitination (19). As seen in CT, the two lysine residues in wild-type ricin toxin A subunit are not effective substrates for ubiquitination; the replacement of these lysine residues with arginines yielded the same activity as that of the wild type (10). A defect in cytotoxicity was observed in variant ricin toxin A subunit with two lysine substitutions, while four lysines substitutions resulted in an even greater defect. The toxicity of these variants was recovered upon the addition of a proteasome inhibitor (10).
Recently, evidence for the exploitation of the ERAD pathway by AB toxins has been obtained by the association of p97 with these substrates. The AAA ATPase p97 is also known as valosin-containing protein and is involved in the retrotranslocation of ERAD substrates (4, 9). Although its exact role is unknown, it is thought that p97 may pull substrates out of the translocation pore and into the cytosol (22, 53). The cytotoxicity of CT, ricin, and Pseudomonas aeruginosa exotoxin A is inhibited in p97 mutant cell lines; in contrast, diphtheria toxin toxicity has been shown to be unaffected by this mutant (1). A role for p97 in retrotranslocation is further implied by its association with several other proteins involved in this pathway, such as the pore-forming protein Derlin-1, Ufd1 (a ubiquitin fusion degradation protein), and Npl4, which has an undefined role in the recognition and targeting of ubiquitinated proteins to the proteasome. If p97 is indeed involved in the translocation of ERAD proteins, the fact that ubiquitination is not essential for the binding of p97 to these substrates (14, 54) may be of importance to AB toxins that are poor subjects for ubiquitination due to their lysine paucity, particularly PT S1. p97 has been shown to associate with CTA in Vero cells, as determined by immunoprecipitation; these factors were found to coprecipitate, which suggests that their interaction occurs in the cytosol (1).
We found that indirect immunofluorescence analysis of CHO cells transfected with the lysine variant toxins further illustrated that the addition of lysine residues rendered S1 subject to proteasomal degradation, since an increase in variant S1 expression was observed in transfectants upon the addition of a proteasome inhibitor (data not shown). In transfected cell lines, it was surprising to find that undetectable levels of variant PT (at least at the sensitivity limits of Western blot analysis) can still result in high levels of activity; this is at odds with data obtained with exogenously applied variant PT, where a reduction in activity was observed due to the addition of lysine residues and may be due to the very low level of S1 that reaches cytosolic targets.
We hypothesize that PT traffics in a retrograde manner from the Golgi to the ER and subsequently from the ER to the cytosol. Retrograde trafficking of S1 to the ER was indicated previously in studies using an enzymatically inactivated form of PT (PT9K/129G) as a delivery vehicle for cytolytic T-lymphocyte epitopes to major histocompatibility complex class I (6). It was hypothesized that the delivery pathway used by the fusion protein may be the normal trafficking pathway of PT. Treatment of cells with brefeldin A (a reagent that disrupts the structure of the Golgi) prevented the presentation of epitopes, suggesting that the fusion protein traffics via the Golgi, consistent with a retrograde pathway. The fusion protein was hypothesized to reach the ER, where proteolytic release of the epitope occurred. Epitope delivery to major histocompatibility complex class I was unaffected by proteasome inhibition, indicating that the fusion protein was not processed in the cytosol, probably due to a lack of ubiquitination and proteasome targeting (6). Evidence for the trafficking of PT holotoxin to the Golgi and ER has recently been obtained in our lab by generating PT constructs tagged with peptides for a Golgi-specific activity (tyrosine sulfation) and an ER-specific activity (N-glycosylation) (R. D. Plaut and N. H. Carbonetti, unpublished data).
We have demonstrated that the replacement of surface-exposed arginine residues in PT S1 with lysine residues renders the toxin subject to degradation by the proteasome, presumably by ubiquitination of the lysine residues; these observations are similar to those found for other toxins such as CT and ricin. Attempts to detect ubiquitinated species of variant PT by immunoprecipitation were unsuccessful, most likely due to the low level of toxin within the cells. A greater reduction in toxicity is seen in variants with more lysine substitutions.
We thank Wei Dong for generating some of the variant forms of S1 used in these experiments, Roger Plaut (of the Carbonetti lab) for critical reading of the manuscript, and Randy Read for advice on the construction of lysine variants.
Published ahead of print on 9 April 2007. ![]()
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