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Infection and Immunity, October 2008, p. 4538-4545, Vol. 76, No. 10
0019-9567/08/$08.00+0 doi:10.1128/IAI.00324-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Benaroya Research Institute at Virginia Mason, 1201 Ninth Ave., Seattle, Washington 98101,1 Department of Immunology, University of Washington, Seattle, Washington 98195,2 Madigan Army Medical Center, Tacoma, Washington 984313
Received 11 March 2008/ Returned for modification 14 May 2008/ Accepted 24 July 2008
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Anthrax vaccines have been used for prevention of anthrax in both humans and domestic animals since 1930 (7, 23). The currently licensed vaccine in the United States is anthrax vaccine adsorbed (AVA) (BioThrax). The vaccine is produced by harvesting the supernatant of an avirulent strain of B. anthracis, which is filtered and adsorbed onto aluminum hydroxide gel, which acts as a depot and adjuvant for the vaccine. One of the major components of the AVA vaccine is the protective antigen (PA), a subunit of two different exotoxins (lethal toxin and edema toxin) of the bacterium. Military personnel receive this vaccine as a precaution against the use of anthrax spores in biological warfare. The current recommended immunization protocol consists of a total of six doses of vaccine over a 2-year period, followed by an annual booster. Experiments with animal models indicated that induction of neutralization antibody directed against PA in the host is correlated with protective immunity (3, 5, 15, 20, 25, 26). Although there are many studies of humoral responses against PA after vaccination in humans (2, 8, 9, 13, 19), studies of cellular responses against PA after AVA vaccination are quite limited (1, 12, 24). In general, cellular responses elicited by vaccines are not well characterized, due to difficulties in monitoring of cellular immune responses. The initial objective of this study was to investigate whether AVA vaccination effectively elicits PA-specific memory CD4+ T cells. During the course of the study, we observed that PA-reactive T cells were also detected in non-AVA vaccinees. This observation provided an opportunity to explore the effect of AVA vaccine on naïve, PA-reactive T cells. Here, we report that AVA vaccination leads to the induction of PA-specific Th2 CD4+ T cells. The study also demonstrated that tetramers are a useful tool for monitoring CD4+ T-cell responses after vaccination.
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TABLE 1. HLA haplotypes of AVA vaccinees and nonvaccinees
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Recombinant-PA-protein stimulation assay. In some experiments, peripheral blood mononuclear cells (PBMC) were stimulated with recombinant PA (provided by the Biodefense and Emerging Infections Research Repository [BEI Resources]). For these experiments, PBMC were allowed to adhere to 48-well plates for 1 h, nonadherent cells were removed, and the remaining adherent cells were utilized as antigen-presenting cells (APC). These cells were pulsed with 500 µg/ml of PA for 2 h and were washed twice with T-cell medium (10% pooled human serum in RPMI medium containing L-glutamine, HEPES, 0.01 U/ml penicillin, and 0.01 µg/ml streptomycin). CD4+ T cells were isolated from the nonadherent cell fraction with a Miltenyi CD4+ T-cell isolation kit and were added back to the culture as responding T cells. These cells were cultured for 14 days before tetramer staining analysis.
Frequencies and surface phenotypes of PA-specific T cells. The method for estimating the frequency of PA-specific T cells was as previously described (14). In brief, 6 million PBMC in a volume of 100 µl were stained with 20 µg/ml tetramers at room temperature for 2 h. During the last 20 min, the cells were stained with fluorescein isothiocyanate (FITC)-conjugated anti-CD3 (eBioscience), APC-conjugated anti-CD4 (eBioscience), peridinin chlorophyll protein (PerCP)-conjugated anti-CD14 (BD Pharmingen), and PerCP-conjugated anti-CD19 (BD Pharmingen). Subsequently, the cells were washed and then incubated with anti-phycoerythrin (anti-PE) magnetic beads (Miltenyi Biotec) at 4°C for another 20 min. The cells were washed again, and 1/10 of the fraction was saved for later analysis. The other fraction was passed through a Miltenyi magnetic column. The bound fractions were flushed out and collected. Cells in both the bound fraction and the precolumn fraction were stained with ViaProbe (BD Bioscience) for 10 min before flow cytometry with a FACSCalibur. All data were analyzed using FlowJo (Tree Star). For analysis, cells were gated on forward scatter, side scatter, expression of CD3, and lack of CD14 and CD19 expression. Dead cells were also removed from analysis by using ViaProbe. The frequency was calculated as the total number of tetramer-positive cells in the bound fraction divided by 10 times the total number of CD4+ T cells in the precolumn fraction.
For phenotyping experiments using a FACSCalibur, the following antibodies were used: CD4-APC, CD4-FITC (eBioscience), CD14-PerCP, CD19-PerCP, CD28-FITC (eBioscience), CD45RA-FITC (BD Pharmingen), CD62L-FITC (BD Pharmingen), CCR4-Alexa Fluor 647 (BD Pharmingen), and CCR7-FITC (R&D). For experiments using an LSRII, the following antibodies were used: CD4-Pacific Blue (BD Pharmingen), CD14-PerCP, CD19-PerCP, CD62L-FITC, CCR4-Alexa Fluor 647, and CCR7-PE-Cy7 (BD Pharmingen).
CD45RA fractionation assay. For CD45RA+ phenotyping of PA-reactive T cells in non-AVA vaccinees, CD4+ T cells were sorted into CD4+ CD45RA+ and CD4+ CD45RA– populations by using a FACS Vantage. Cells were then plated in the presence of APC, stimulated with the appropriate PA peptides at 10 µg/ml, cultured for 14 days, and analyzed by tetramer staining.
Cytokine analysis of PA-specific T cells. CD4+ T cells were stimulated with 10 µg/ml of PA peptide and cultured for 2 weeks in the presence of APC. Cells were washed twice, and 200,000 cells in 0.1 ml were then transferred to a 96-well plate in which wells were precoated with the corresponding tetramers. Soluble anti-CD28 (1 µg/ml; BD Bioscience) was also added to the culture. Twenty-five microliters of supernatant was harvested 24 h later and transferred to a Meso Scale Th1/Th2 multiplex plate (Meso Scale Discovery). The plate was processed according to the manufacturer's instructions and read using a Meso Scale Sector 2400 imager (Meso Scale Discovery).
Homology search. To identify homologous peptides shared by the proteins of other pathogens, the antigenic peptides identified within PA were analyzed individually using the NCBI protein BLAST tool. The PSI-BLAST algorithm was used to identify, align, and rank similar peptide sequences. Default parameters were used for this analysis.
Statistical methods.
For comparing the cytokine profiles of T cells from vaccinees and nonvaccinees, a two-tailed, unpaired t test was used to compare the mean gamma interferon (IFN-
)/interleukin-13 (IL-13) and IFN-
/IL-5 ratios for the two groups.
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FIG. 1. Identification of DR0701-restricted PA epitopes. CD4+ T cells from a DR0701 AVA vaccine were stimulated with 19 peptide pools derived from PA of B. anthracis. (A) Cells were stained with the corresponding pooled DR0701/PA peptide tetramers (Tet) at day 14. Pools 5, 10, 13, 15, and 18 gave positive staining results. (B) Cells stimulated with peptide pools that gave positive staining results were stained with individual DR0701 peptide tetramers at day 17. The percentages of tetramer-positive cells are indicated. The background staining level in this experiment was 0.3% or lower. Tetramers with PA peptides p22, p47, p49, p50, p64, p75, and p90 gave staining results above the background level, indicating that these peptides contain DR0701-restricted epitopes. These peptides correspond to PA169-188, PA369-388, PA385-404, PA393-412, PA505-524, PA593-612, and PA713-732, respectively.
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TABLE 2. DR0401- and DR0701-restricted PA epitopes
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FIG. 2. Detection of PA-specific CD4+ T cells in non-AVA vaccinees. The TGEM approach was applied to PBMC from a DR0701 nonvaccinee (A) and a DR0401 nonvaccinee (B). The figure shows only positive staining samples (PA385-404, PA505-524, PA713-732, and PA617-636) and one representative negative staining sample (PA169-188). Tet, tetramer.
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FIG. 3. Frequencies of PA-specific CD4+ T cells in peripheral blood samples. PBMC were stained with PE-labeled PA tetramers (Tet) as indicated and subsequently with anti-CD4, anti-CD14, and anti-CD19 antibodies. Cells were then captured with anti-PE magnetic beads and enriched using a magnetic column before flow cytometry analyses. Results of staining from an AVA vaccinee with the DR0701 haplotype are shown in panel A, and results from an AVA-naïve DR0701 subject are shown in panel B. Detection of influenza virus A matrix protein-reactive T cells with the DR7/MP41-60 tetramer was used as a positive control. The frequencies of PA-specific T cells per million CD4+ cells are indicated in each of the positive quadrants. The frequencies of PA593-612 in the AVA vaccinee and all PA-reactive T cells in the nonvaccinee were below the sensitivity limit of the assay.
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TABLE 3. Frequencies of PA-specific CD4+ T cells
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FIG. 4. CD45RA+ phenotype of PA-specific CD4+ T cells in AVA vaccinees and non-AVA vaccinees. (A) PBMC of an AVA vaccinee with the DR0701 haplotype were stained with PE-labeled tetramers (Tet) as indicated and subsequently stained with anti-CD4, anti-CD45RA, anti-CD14, and anti-CD19 antibodies. Cells were then captured with anti-PE magnetic beads and enriched using a magnetic column before flow cytometry analyses (representative data from four experiments are shown). (B) PBMC of three nonvaccinated subjects with the DR0701 haplotype were sorted into CD4+ CD45RA+ and CD4+ CD45RA– populations. These cells were stimulated with the PA peptides as indicated for 14 days and then analyzed with the corresponding PA tetramers. (C) PBMC of a nonvaccinated subject with the DR0401 haplotype were sorted into CD4+ CD45RA+ and CD4+ CD45RA– populations. These cells were stimulated with the PA peptides as indicated for 14 days and then analyzed with the corresponding PA tetramers (representative data from two experiments are shown).
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FIG. 5. Phenotypes of PA-specific CD4+ T cells in AVA vaccinees. (A) PBMC of a DR0701-vaccinated subject were stained with a pool of DR0701/PA369-388, DR0701/PA385-404, and DR0701/PA505-524 tetramers by using magnetic bead enrichment. Cells were also stained with surface antibodies as indicated. For analysis, cells were gated on side scatter, expression of CD4, and lack of CD14 and CD19 expression. (B) PBMC of a DR0701-vaccinated subject were stained with the same set of pooled tetramers and with anti-CD4, anti-CD14, anti-CD19, anti-CCR4, anti-CCR7, and anti-CD62L. CD4+, CD14–, and CD19– cells were gated and analyzed for tetramer staining and CCR7 staining. Both the CCR7+ and the CCR7– tetramer-positive cells were further gated and analyzed for CCR4 and CD62L expression.
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TABLE 4. Phenotypes of PA-reactive T cells
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, IL-5, and IL-13 in the supernatants were assayed. Examples of results from these experiments are shown in Table 5. Multiple experiments with different AVA vaccinees indicated that the PA-specific T cells secrete IFN-
, IL-5, and IL-13, with IL-5 and IL-13 as their major cytokines (Table 5 and Fig. 6). The cytokine profiles of PA-specific T cells from nonimmunized subjects were also analyzed. Although these T cells also secreted IFN-
, IL-5, and IL-13, IFN-
was the major cytokine observed (Table 5 and Fig. 6). t tests comparing the IFN-
/IL-13 and IFN-
/IL-5 ratios (indicating the polarization of the cytokine response) for AVA vaccinees and nonvaccinees demonstrated significant differences (P values of <0.0001 and <0.01, respectively). Thus, PA-specific T cells from vaccinees were Th2-like (predominantly secreting IL-5 and IL-13), while PA-specific T cells from nonvaccinees were more Th0/Th1-like. The Th2-like profile of PA-reactive T cells in AVA vaccinees was antigen specific, as tetanus toxoid-reactive T cells from AVA vaccinees exhibited a Th0 phenotype when identical analysis was used (data not shown). |
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TABLE 5. Cytokine profiles of PA-reactive T cells in vaccinees and nonvaccinees
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FIG. 6. Cytokine profiles of PA-specific CD4+ T cells in AVA vaccinees and nonvaccinees. CD4+ T cells from vaccinated or nonvaccinated subjects were stimulated with the antigenic PA peptides for 14 days. Cells were washed twice, and 200,000 cells in 0.1 ml were transferred to a 96-well plate which had been precoated with the corresponding PA-specific tetramers. IFN- , IL-13, and IL-5 levels were assayed 24 h after activation of the plate-bounded tetramer by using a Meso Scale Th1/Th2 plate as described in the text. IFN- /IL-13 and IFN- /IL-5 ratios were calculated as a measure of the polarization of the cytokine response and compared for vaccinees and nonvaccinees. Statistical significance was determined by the unpaired, two-tailed t test; P values of <0.05 were considered significant.
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The TGEM approach was effective in identifying T-cell epitopes within PA and detecting PA-specific CD4+ T cells. Though TGEM may fail to detect some low-avidity epitopes, high-avidity T cells as detected by TGEM are likely to be the most biologically relevant. Surprisingly, PA-specific T cells were detected not only in the PBMC of vaccinated subjects but also in those of nonvaccinated subjects examined after a single cycle of antigen-specific stimulation in vitro. Further study indicated that PA-specific T cells from nonvaccinated subjects were present at frequencies that were lower than 1 in 300,000 CD4+ T cells. Although the majority of PA-reactive T cells from nonvaccinees resided in the CD45RA+ population, it is surprising that PA-reactive CD4+ T cells from all the DR0701 nonvaccinees examined (a total of three) exhibited a memory phenotype for the PA385-404 epitopes. It is possible that the general populations are exposed to minute numbers of Bacillus anthracis spores or bacteria, which can be found naturally in the soil, through inhalation and ingestion. We consider this possibility very unlikely, as PA-reactive T cells that recognized other PA epitopes in the same subjects are naïve T cells. It is more likely that PA385-404-reactive T cells are cross-reactive to other antigenic epitopes which have previously been recognized by the immune system. A homology study revealed that the PA389-404 (LNANIRYVNTGTAPIY) sequence shares a high degree of similarity with the sequences of several clostridial binding toxins, including the C2 toxin of Clostridium botulinum (aa 362 to 377, INPNIRYYNTGTAPVY) and the binary toxin CdtB of Clostridium difficile (aa 389 to 404, INANVRYYNTGTAPMY). Therefore, a previous challenge with one or more of these antigens may generate a memory population capable of recognizing this PA epitope.
PA-specific T cells from vaccinees were detected by direct ex vivo tetramer staining, with frequencies ranging from 1 in 22,000 to 1 in 100,000 CD4+ T cells in the five subjects examined. As PA-reactive T cells could not be detected by ex vivo staining in nonvaccinated subjects, these data imply that there are increases in the frequencies of PA-specific T cells in vaccinated subjects. All of the PA-specific T cells in vaccinated subjects were CD45RA–, indicating that these are memory T cells. Since each of the subjects tested had measurable responses to more than one PA epitope, the data imply that the total frequency of T cells directed against the PA protein restricted by a particular DR allele can be as high as 1 in 10,000 even years after the last vaccination. The observed frequencies of PA-reactive T cells were also similar to those reported for influenza virus A-specific CD4+ T cells (6). Taken together, these results demonstrated that AVA vaccination can elicit strong heterogeneous CD4+ T-cell responses against PA.
Although the epitope recognition patterns are similar in AVA vaccinees and nonvaccinees, PA-specific CD4+ T cells expanded from the PBMC of vaccinated and nonvaccinated subjects exhibited different cytokine profiles upon antigen rechallenge. PA-reactive T cells from AVA vaccinees produced large amounts of IL-5 and IL-13 compared to IFN-
, while PA-specific T cells from nonvaccinees produced more IFN-
than IL-5 and IL-13. Because it was technically difficult to detect cytokine secretion from antigen-specific T cells directly ex vivo, these cytokine results were obtained from expanded cells. Thus, the observed differences may be (at least in part) an artifact of in vitro expansion. However, the observation that the phenotype of PA-specific T cells from AVA vaccinees is Th2-like is also supported by the observation that a large percentage of these T cells expressed the CCR4 surface marker in direct ex vivo staining experiments. Though on average only 25% of total CD4+ cells in PBMC express CCR4 on the cell surface (data not shown), 55 to 77% of PA-reactive T cells expressed the CCR4+ marker in the vaccinees studied. These results suggest that AVA vaccination leads to the generation of PA-reactive T cells with a Th2-like phenotype. Previous publications have indicated that T-cell responses to PA contained a mixture of both Th1-like and Th2-like cells (1, 12). However, our current findings clearly indicate that PA-specific memory CD4+ cells are prone to Th2 cytokine production, while PA-specific CD4+ T cells from nonvaccinees are more prone to Th0/Th1 cytokine production. This apparent contrast may be caused by differences in experimental methodology. Allen et al. (1) assayed for IL-4 and IL-10 but not IL-5 or IL-13. Laughlin et al. (12) assayed two expanded T-cell clones, demonstrating that one primarily produced IFN-
while the other produced IL-5. A Th2-like phenotype would be desirable for the stimulation of B cells, potentially triggering a protective antibody response.
The results of direct ex vivo surface phenotyping indicated generation of PA-specific TCMs (22) in vaccinated subjects, as there were clear populations of CD45RA– CCR7+ CD62L+ PA-reactive T cells in AVA vaccinees. Also of interest, the PA-specific TCMs were elevated in their expression of CCR4, at least in the small number of subjects examined. These observations are an indication that AVA vaccination leads to the generation of pre-Th2 TCMs (21). The presence of these populations of TCMs supports the observation that T cells directed against PA could be detected even in subjects that had received the vaccines 10 to 15 years earlier (1). In conclusion, our findings demonstrated that the AVA vaccine can elicit strong CD4+ T-cell responses in AVA vaccines and that vaccination leads to the generation of PA-specific, pre-Th2 memory T cells.
More generally, this study illustrates the fact that class II tetramers can be used as a tool to monitor CD4+ cell responses after vaccination. Due to the technical challenges associated with detecting antigen-specific CD4+ T cells, studies of the effect of vaccination on antigen specific CD4+ T-cell responses have been limited. In this paper, we showcase the use of class II tetramers to identify T-cell epitopes for an antigen of interest and subsequently to perform direct ex vivo analysis of the frequencies and phenotypes of antigen-specific T cells within vaccinated subjects. This approach should be applicable to any antigen, facilitating the monitoring of CD4+ responses after vaccination. Future efforts in this area will help to decipher the influences of route of immunization, adjuvants, and vaccine composition on the phenotypes and frequencies of resulting memory T-cell responses. The detection of specific T cells recognizing B. anthracis PA within naïve subjects also raises the possibility that it may be feasible to identify the dominant CD4+ T-cell epitopes for a given antigen of a pathogen by measuring the responses of PBMC from healthy subjects that are completely naïve to the antigen of interest.
Published ahead of print on 4 August 2008. ![]()
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