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Infection and Immunity, February 2008, p. 601-611, Vol. 76, No. 2
0019-9567/08/$08.00+0 doi:10.1128/IAI.00789-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
7122
INRS-Institut Armand-Frappier, Laval, Québec, Canada,1 INRA, Centre de Tours, Infectiologie Animale et Santé Publique UR1282, 37380 Nouzilly, France,2 Center for Infectious Diseases, The Biodesign Institute, Arizona State University, Tempe, Arizona 85287,3 Department of Biology, Washington University, St. Louis, Missouri 631304
Received 8 June 2007/ Returned for modification 25 July 2007/ Accepted 5 November 2007
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7122 were assessed using isogenic mutants in chicken infection models. In a single-strain infection model, compared to
7122, the
sit strain demonstrated reduced colonization of the lungs, liver, and spleen. Complementation of the
sit strain restored virulence. In a coinfection model, compared to the virulent APEC strain, the
sit strain demonstrated mean 50-fold, 126-fold, and 25-fold decreases in colonization of the lungs, liver, and spleen, respectively. A
mntH
sit strain was further attenuated, demonstrating reduced persistence in blood and mean 1,400-fold, 954-fold, and 83-fold reduced colonization in the lungs, liver, and spleen, respectively. In coinfections, the
feoB
sit strain demonstrated reduced persistence in blood but increased colonization of the liver. The
mntH,
feoB, and
feoB
mntH strains were as virulent as the wild type in either of the infection models. Strains were also tested for sensitivity to oxidative stress-generating agents. The
mntH
sit strain was the most sensitive strain and was significantly more sensitive than the other strains to hydrogen peroxide, plumbagin, and paraquat. sit sequences were highly associated with APEC and human extraintestinal pathogenic E. coli compared to commensal isolates and diarrheagenic E. coli. Comparative genomic analyses also demonstrated that sit sequences are carried on conjugative plasmids or associated with phage elements and were likely acquired by distinct genetic events among pathogenic E. coli and Shigella sp. strains. Overall, the results demonstrate that SitABCD contributes to virulence and, together with MntH, to increased resistance to oxidative stress. |
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Previously, SitABCD from APEC strain
7122 was shown to transport iron and manganese, and in the absence of the endogenous manganese transporter MntH, SitABCD contributed to protection of APEC and E. coli K-12 against hydrogen peroxide (56). SitABCD from S. enterica serovar Typhimurium similarly mediated transport of manganese and iron and, in combination with MntH, contributed to resistance to hydrogen peroxide (4). Furthermore, the loss of Sit in combination with the loss of either MntH or the Feo ferrous iron transporter resulted in greater attenuation of Salmonella virulence in susceptible mice (4). A Shigella flexneri 2a sit mutant was less able to grow in iron-restricted medium (38, 55). However, loss of Sit had no appreciable effect on intracellular multiplication or cell-to-cell spread in epithelial cells or on virulence in the guinea pig keratoconjunctivitis model (38, 55). In contrast, the cumulative loss of Sit and iron transporters such as Feo or the aerobactin siderophore system resulted in a reduced capacity to form plaques on epithelial cells (55). In addition, the cumulative loss of Sit and MntH resulted in a reduced capacity of Shigella flexneri 2a to survive in macrophage cell lines (53).
Divalent ion transporters such as SitABCD, MntH, and Feo may contribute to the virulence of APEC and other bacterial pathogens by facilitating acquisition of iron and/or manganese. Both manganese and iron are essential cofactors for enzymes required for metabolic processes and protection against oxidative stress (1, 23, 33). Thus far, the role of the SitABCD transporter, alone or in combination with other divalent metal transporters, such as MntH and Feo, in the virulence of pathogenic E. coli has not been investigated. A sitABCD mutant derivative of APEC strain
7122 (O78:K80:H9) caused lesions in chickens similar to those induced by the parental strain and was also as resistant to hydrogen peroxide as the wild-type parent, suggesting that other metal transporters were possibly compensating for the absence of the Sit system (56). However, a sitB signature-tagged transposon mutant of APEC strain IMT5155 (O2:K5), which contains two copies of the sit genes, was moderately attenuated compared to its wild-type parent in a coinfection competition model in chickens (37), suggesting a role for the Sit transporter in virulence. Herein we investigate the individual role of SitABCD in the virulence of APEC O78:K80 strain
7122 in single-strain infection and competitive infection models in chickens. In addition, we determined the roles of the MntH and Feo transporters, alone or combined with SitABCD, in the virulence of APEC strain
7122 in the chicken and in resistance to oxidative stress agents. The distribution of sit genes among pathogenic E. coli and E. coli reference strains was also assessed. Finally, the sit sequences available from genomic databases were compared and suggest that sit genes were likely inherited through distinct transfer events leading to integration within conjugative plasmids in APEC or on prophage-associated genomic islands among E. coli and Shigella sp. strains.
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was routinely used for plasmid cloning and recovery. Antibiotics were added, as required, at the following concentrations: kanamycin, 30 µg/ml; ampicillin, 100 to 200 µg/ml; chloramphenicol, 30 µg/ml; nalidixic acid, 15 µg/ml; and tetracycline, 10 µg/ml. |
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TABLE 1. Bacterial strains and plasmids used in this study
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Presence of sit sequences among E. coli strains.
The presence of sit sequences among different E. coli strains was investigated by PCR amplification of segments of the sitA and sitD genes that span the length of the sitABCD system. The sitA primers (sitA-F [5'-CGCAGGGGGCACAACTGAT-3'] and sitA-R [5' CCCTGTACCAGCGTACTGG-3']) amplify a 663-bp segment of sitA, and the sitD primers (sitD-F [5'-CTGTGCGCTGCTGTCGGTC-3'] and sitD-R [5'-GCGTTGTGTCAGGAGTAC-3']) amplify a 570-bp segment of sitD. The specificity of each of the primers and the predicted amplification products were verified by comparative genomic/bioinformatic analysis against the sit genes from the E. coli and Shigella genomes or other nucleotide entries in the available databases, including GenBank (http://www.ncbi.nlm.nih.gov/) and coliBASE, an online database for comparative genomics of E. coli and related enterobacteria (http://colibase.bham.ac.uk/) (10). Crude DNA extracts of strains were prepared by alkaline lysis (48). The reactions were carried out using Taq DNA polymerase (New England Biolabs). A 5-µl volume of each bacterial cell lysate was added to a PCR mixture with a final volume of 25 µl containing 6.25 pmol of each primer, 5 nmol of each deoxynucleoside triphosphate, and 0.5 U of Taq polymerase in 1x buffer. PCR conditions were as follows: 95°C for 1 min, followed by 30 cycles of 94°C for 30 s, 54°C for 30 s, and 72°C for 1 min and then an extension period of 72°C for 1 min. Specific amplification was confirmed using strains
7122 and CFT073 as positive controls and E. coli K-12 MG1655, which lacks the sit genes, as a negative control.
Construction of mutant derivatives of APEC strain
7122 and single-copy complementation of the
sit mutation.
The
sitABCD::tetAR (QT205),
mntH::kan (QT878), and
mntH
sitABCD (QT1239) derivatives of strain
7122 are described elsewhere (56). QT1517 was generated by FLP-mediated excision of the
mntH::kan allele from strain QT878 by using plasmid pCP20 (14). The
feoB::kan allele from E. coli K-12 strain JWK3372_1 (2) was used to introduce
feoB mutations into APEC strains. Briefly, the
feoB::kan allele was amplified from genomic DNA of strain JWK3372_1 by using primers MfeoB1 (5'-TCTGGTCTCATGTCGCTGTC-3') and MfeoB2 (5'-GGTGGAACTCTGCTTTTTGC-3') and was introduced into strains
7122, QT205, and QT1517 by homologous recombination using the
red recombinase method (14). Successful transfer of the
feoB::kan mutation was confirmed by PCR, using primers flanking the feoB region. The
feoB::kan derivatives of
7122, QT205, and QT1517 were designated QT877, QT1240, and QT1539, respectively.
The
sitABCD mutant strain QT205 was complemented by single-copy integration of plasmid pIJ93. pIJ93 was constructed by subcloning the XbaI-SalI fragment of pIJ28, containing the sitABCD operon, into the same sites of suicide vector pGP704. pIJ93 was conjugated from strain MGN-617 (16) to strain QT205. A strain that was resistant to ampicillin and found to contain a full-length copy of the sit genes, as confirmed by PCR, was designated QT770.
Sensitivity of E. coli strains to reactive oxygen intermediate (ROI)-generating agents. Sensitivity to oxidative stress was determined by an agar overlay diffusion method on LB and M9-glucose plates (1.5% agar) as described by Boyer et al. (4), with some modifications. Overnight cultures grown in LB broth were adjusted to an optical density at 600 nm (OD600) of 0.5. For tests on M9 medium, the overnight cultures were washed with M9-glucose prior to OD600 adjustment. One hundred microliters of each culture was suspended in molten top agar (0.5% agar) and poured over the agar plates. Filter paper disks (6-mm diameter; Becton Dickinson) were added to the surfaces of the solidified overlays, and 10 µl of hydrogen peroxide (30%), paraquat (200 mM for LB and 40 mM for M9), plumbagin (53 mM), phenazine methosulfate (PMS) (15 mM), or phenazine ethosulfate (PES) (15 mM) was spotted onto the disks. The plates were then incubated overnight at 37°C, and following growth, the diameters of inhibition zones were measured.
Experimental infection of chickens via the air sacs.
Two different infection models, a comparative single-strain infection model and a competitive coinfection model, were used to investigate the importance of different metal transporters for the virulence of APEC. Chickens used in these studies were White Leghorn specific-pathogen-free chickens obtained from either Charles River Spafas (now Charles River Laboratories [Franklin, CT]) or the Canadian Food Inspection Agency (Ottawa, Canada). For the single-strain infection model, groups of 3-week-old White Leghorn chickens were inoculated in the right thoracic air sac with 0.1 ml (107 CFU) of a bacterial inoculum consisting of a diluted 24-h beef heart infusion broth culture of APEC strain
7122 or an isogenic mutant derivative. For the coinfection experiments, strains were prepared as for the single-strain infections, and equal quantities (5 x 106 CFU) of each mutant strain and a virulent
lacZYA derivative of strain
7122 (QT51) were used as the inoculum. Use of the
lacZYA derivative of strain
7122 (QT51) in coinfections permitted a direct evaluation of the number of colonies of QT51 (Lac– colonies) compared to the metal transporter mutant (Lac+ colonies) on each plate. For the coinfection studies, blood samples were collected aseptically from each chicken 6, 24, and 48 h following bacterial inoculation and were plated directly or diluted and then plated on MacConkey-lactose agar plates (Difco) supplemented with nalidixic acid (40 µg/ml). All birds were euthanized at 48 h postinfection and then necropsied. For the single-strain infection experiments, gross mean lesion scores for the air sacs and combined lesion scores for the pericardium and liver were determined as described by Lamarche et al. (36). Organs were removed aseptically. The left lung, liver, and spleen of each animal were weighed, suspended in phosphate-buffered saline, and homogenized with an Omnimixer homogenizer. Dilutions of homogenates were plated onto MacConkey-lactose agar plates with appropriate antibiotics for bacterial quantification. Several randomly selected colonies per organ were verified by serotyping using O78-specific antiserum.
Bioinformatic analysis and comparison of sit sequences from different E. coli and Shigella strains. The sequences and locations of sit gene clusters within the genomes of various E. coli and Shigella strains were identified from the available databases, including GenBank (http://www.ncbi.nlm.nih.gov/) and coliBASE. Sequence analyses, multiple sequence alignment by CLUSTALW, and generation of a phylogenetic tree were done using the MEGA3 software package (35; http://www.megasoftware.net). The phylogenetic tree of the sitABCD gene clusters was constructed by using the neighbor-joining method (57) of pairwise comparison by maximum likelihood analysis using the Jukes-Cantor estimate (30) to calculate nucleotide substitution rates.
Statistical analyses. Statistical analyses were performed using the Prism 4.0b software package (GraphPad Software).
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7122(pAPEC-1) (Fig. 1), and genomic and plasmid-carried copies of sit sequences are present in APEC O2:K5 strain IMT5155 (GenBank accession no. AM072350 and AM072351).
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FIG. 1. (A) Map location of sit genes in E. coli and Shigella strains. The large circle represents the E. coli K-12 MG1655 genome as a comparative reference, with 0 indicating the start of the sequence. The insertion locations corresponding to E. coli K-12 are indicated on the outer perimeter. The inner black arrows represent the genomic islands and the orientation of the sit genes in different pathogenic strains. The outer gray arrows indicate corresponding e14 and Rac prophage elements located in the same regions in strain MG1655. The asterisks denote the E. coli K-12 corresponding genes flanking either side of SI-19, the genomic island encompassing the sit genes in S. flexneri 2a strain 301 (26). (B) Phylogenetic tree of the sitABCD genes from E. coli and Shigella spp., constructed using the neighbor-joining method with MEGA3 software (35). Ec, Escherichia coli; Sflex, Shigella flexneri; Sson, Shigella sonnei 53G; Sdys, Shigella dysenteriae M131. The full-length sequences spanning from the sitA start codon to the sitD stop codon were analyzed, and sitABCD genes from Salmonella enterica serovar Typhimurium LT2 were used as the outlier sequence. Distances were calculated using the Jukes and Cantor estimate, which assumes a uniform rate of nucleotide substitutions. Branch lengths are indicated on the scale or above branches that are off the scale. Bootstrap confidence levels are indicated adjacent to the nodes. sit sequence data were obtained from NCBI with GenBank accession numbers AY598030 (pAPEC-1 of E. coli 7122) (56), AY545598 (E. coli APEC O2/pAPEC-O2-ColV) (29), DQ381420 (E. coli APEC O1/pAPEC-O1-ColBM) (27), NC_004431 (E. coli CFT073) (67), NC_008563 (E. coli APEC O1) (28), NC_007946 (E. coli UTI89) (11), NC_008253 (E. coli 536) (6), NC_004337 (S. flexneri 2a 301) (26), NC_004741 (S. flexneri 2a 2457T) (66), and NC_003197 (S. enterica LT2) (42) or from coliBASE (10; http://colibase.bham.ac.uk/) for E. coli O42, Shigella dysenteriae M131, and Shigella sonnei 53G. Data available from coliBASE were produced by the sequencing group at the Sanger Institute (http://www.sanger.ac.uk/Projects/Escherichia_Shigella/).
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Comparison of the nucleotide sequences encoding SitABCD from E. coli and Shigella strains in a neighbor-joining tree demonstrated that sit gene clusters form three main groups, comprised of the ExPEC-APEC genomic sit sequences, the Shigella sit sequences, and the plasmid-carried APEC sit sequences (Fig. 1B). The E. coli O42 sit sequence branched separately but was most closely related to Shigella sequences. Phylogenetic analyses of each of the sit genes generated the same distinct groupings (data not shown). Overall, the sit sequences demonstrated nucleotide variability at 156 sites, which corresponded to a variability of 4.5% of the sit gene cluster. Sequences within each of the three main cluster groups demonstrated low variability (from 0.4% to 0.6% overall) within their respective clusters. In contrast, between cluster groups, variability increased two- to sixfold (from 1.2% to 2.5%). Taken together, these differences in genomic locations and nucleotide sequence variability among the sit genes from different E. coli and Shigella strains support the likelihood that sit genes were acquired by these two closely related species via a number of distinct genetic events involving horizontal gene transfer mediated by phages, plasmids, or other mobile genetic elements.
Distribution of sit genes among ECOR collection and E. coli clinical and fecal commensal isolates. The presence and distinct localization of sit sequences among different E. coli and Shigella sp. strains prompted us to further investigate the distribution of sit sequences among a diverse population of strains, including ECOR collection, ExPEC, diarrheagenic E. coli, APEC, and avian fecal commensal E. coli strains. PCR analysis was performed using sitA- and sitD-specific primers which correspond to conserved regions in the sitA and sitD genes currently available from the sequence databases. For all strains tested, there was no discrepancy between results when using either the sitA or sitD primers. Among the 72 members of the ECOR collection, which have been arranged into four phylogenetic groups (A, B1, B2, and D) on the basis of multilocus enzyme electrophoresis (22), the presence of sit sequences was significantly associated with phylogenetic group B2 compared to the other groups (P < 0.0001) (Table 2). All B2 group strains from the ECOR collection were sit positive, whereas in the other phylogenetic groups 50% or fewer were sit positive. In addition, all 32 human ExPEC strains tested were sit positive, whereas only 2 of 23 diarrheagenic E. coli isolates contained sit sequences (Table 2). The presence of sit sequences was also investigated in APEC and avian fecal commensal isolates (Table 3). Among 297 APEC strains classified according to their lethality for 1-day-old chicks, sit sequences were more common in the highly virulent APEC (class 1 lethality) strains (99%) than in the less virulent strains (81% for class 2 and 68% for class 3) (P < 0.001). In addition, sit sequences were highly associated with APEC compared to avian fecal commensal isolates (P < 0.001). For APEC isolates, 275/297 (93%) isolates were sit positive, whereas only 14/32 (44%) avian fecal isolates were sit positive. Overall, the results demonstrate that sit sequences are highly prevalent in E. coli strains associated with extraintestinal infections compared to diarrheagenic E. coli and commensal fecal isolates.
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TABLE 2. Distribution of sit-positive strains within phylogenetic groups among ECOR collection and Escherichia coli clinical isolates
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TABLE 3. Distribution of sit genes among APEC and avian commensal fecal isolates according to lethality class
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7122 in chickens. We first compared the virulence potential of the
sitABCD mutant strain QT205 with that of its isogenic wild-type parent strain,
7122, in a single-strain infection model. Compared to wild-type parent strain
7122, strain QT205 (
sitABCD) was attenuated and demonstrated significantly reduced bacterial numbers in the lungs and livers of infected chickens (Fig. 2a and b). QT205 demonstrated a mean 1-log reduction in colonization of the spleens; however, the difference was not significant (P = 0.0545) (Fig. 2c). The sit-complemented derivative of QT205 (QT770) regained virulence to levels comparable to that of the wild-type parent strain,
7122 (Fig. 2). Despite the decreased persistence of QT205 in chickens, this strain caused gross lesions of airsacculitis and pericarditis/perihepatitis that were similar to those caused by the wild-type parent (data not shown).
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FIG. 2. Colonization of extraintestinal organs of chickens by APEC strain 7122 and derivatives in the single-strain infection model. Data are presented as log CFU/gram of tissue. Each data point represents a tissue sample from an individual infected chicken at 48 h postinfection. Organs sampled were the lungs (a), liver (b), and spleen (c). Strains tested were wild-type APEC strain 7122 (), QT205 ( sitABCD) ( ), and QT770 (QT205::sitABCD) ( ). P values for comparative differences in colonization by QT205 and the wild-type strain, as determined by the Mann-Whitney test, are indicated below the x axes.
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7122. In single-strain infection experiments, in contrast to strain QT205 (
sitABCD), strains QT877 (
feoB) and QT878 (
mntH) persisted in all tissues at levels similar to that of wild-type APEC strain
7122. Thus, in the presence of a functional SitABCD system, FeoB or MntH did not appear to be of major importance for the virulence of APEC
7122 in chickens. In addition, in the single-strain infection model, mutant strains QT1239 (
sitABCD
mntH) and QT1240 (
sitABCD
feoB) were not any more attenuated than the
sitABCD single mutant QT205 (data not shown). The mutant derivatives lacking functional Sit, MntH, and/or Feo transporters demonstrated no appreciable difference in growth rate compared to the wild-type parent when cultured in either rich (Luria broth) or minimal (M9-glucose) medium (data not shown). Therefore, the reduced colonization of tissues by the sit and other attenuated mutants during infection of chickens was most likely due to a decreased capacity to survive in vivo, not a global reduction in fitness or growth.
Compared to single-strain infection models, competitive coinfection models using virulent strains and isogenic mutants can demonstrate more sensitivity to differences in colonization or virulence. Because single-strain infections in chickens did not show any attenuation for strains QT877 (
feoB) and QT878 (
mntH), and since no differences in attenuation between strain QT205 (
sitABCD) and the double mutants QT1239 (
sitABCD
mntH) and QT1240 (
sitABCD
feoB) were observed in single-strain infections, we tested these strains in a competitive coinfection model. For this model, we used APEC strain QT51, a
lacZYA derivative of strain
7122, as the competitor strain. QT51 was shown to be as virulent as the wild-type parent strain
7122 in both single-strain infection and coinfection experiments (data not shown). The use of a virulent Lac-negative wild-type derivative permitted us to directly compare the levels of the Lac-positive mutant derivative and the virulent Lac-negative competitor strain from the same biological samples by differential counts on MacConkey-lactose agar plates.
In coinfection experiments, strain QT205 (
sitABCD) was clearly attenuated and showed a significantly reduced competitive index (CI) compared to that of competitor strain QT51, with a mean 50-fold decrease in the lung (Fig. 3a) and a mean 126-fold decrease in the liver (Fig. 3b). These results were consistent with the results observed for the single-strain infection experiments. In addition, QT205 was also significantly reduced, by a mean of 25-fold, in the spleen (Fig. 3c). During the course of the infection, no significant differences between QT51 and QT205 were apparent in the blood at 6 h and 24 h postinfection (Fig. 4). However, QT205 was significantly reduced, by a mean of 3.6-fold, in the blood by 48 h postinfection. Unlike strain QT205, strains QT877 (
feoB) and QT878 (
mntH) were present at similar levels to those of strain QT51 in all tissues and blood (Fig. 3 and 4). These results were consistent with the lack of attenuation of these strains in the single-strain infection model.
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FIG. 3. Comparative colonization of chicken tissues by APEC 7122 derivatives lacking the Sit, MntH, or Feo metal transporter and virulent 7122 lac derivative strain QT51. A competitive coinfection model was used in which QT51 and different metal transporter mutants were inoculated simultaneously. At 48 h postinfection, tissues were sampled, and results are presented as the log10 CI. The CI represents the relative numbers of the two test strains from the tissues sampled (the output ratio) compared to the initial numbers of the strains in the inoculum (input ratio). Negative CI values indicate a decreased capacity for the mutant to compete with the virulent test strain (QT51). Horizontal bars indicate the mean log10 CI values. Each data point represents a sample from an individual chicken. Ten to 12 chickens were used for each infection group. Organs sampled were the lungs (a), spleen (b), and liver (c). Strains tested were QT205 ( sitABCD) (), QT878 ( mntH) ( ), QT877 ( feoB) ( ), QT1239 ( sitABCD mntH) ( ), and QT1240 ( sitABCD feoB) ( ). Statistically significant decreases in CI values are indicated with asterisks (*, P < 0.005; **, P < 0.001), as determined by the Wilcoxon matched-pair test.
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FIG. 4. Comparative persistence of APEC 7122 derivatives lacking the Sit, MntH, or Feo metal transporter and virulent 7122 lac derivative strain QT51 in the blood of infected chickens. Experiments were conducted using a coinfection model as described in the legend to Fig. 3. Blood was sampled at 6 h (a), 24 h (b), and 48 h (c) postinfection. Strains tested were QT205 ( sitABCD) (), QT878 ( mntH) ( ), QT877 ( feoB) ( ), QT1239 ( sitABCD mntH) ( ), and QT1240 ( sitABCD feoB) ( ). Statistically significant decreases in CI values, as determined by the Wilcoxon matched-pair test, are indicated with asterisks (*, P < 0.005; **, P < 0.001).
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sitABCD
mntH) was the most attenuated strain (Fig. 3 and 4). QT1239 demonstrated a significantly reduced CI in the blood at all times, with mean decreases of 2.2-fold, 16.2-fold, and 10-fold compared to the competitor strain at 6 h, 24 h, and 48 h, respectively. QT1239 also demonstrated a mean 1,400-fold reduction in the lungs, 954-fold reduction in the liver, and 83-fold reduction in the spleen compared to strain QT51. In contrast, strain QT1240 (
sitABCD
feoB) demonstrated significant, 2.2-fold and 5.6-fold reductions in the blood at 24 h and 48 h, respectively. QT1240 was also reduced 26.8-fold in the lungs and 6.8-fold in the spleen but was not significantly reduced in the liver (Fig. 3). Strain QT1539 (
feoB
mntH) did not demonstrate any significant decrease compared to strain QT51 in either the blood or tissues (data not shown). Comparison of the mean CIs for strains QT205 (
sitABCD), QT1239 (
sitABCD
mntH), and QT1240 (
sitABCD
feoB) demonstrated no significant differences between the groups in the blood and spleen. In the lung, QT1239 (
sitABCD
mntH) was significantly more attenuated in the coinfection model than was QT205 (
sitABCD) (P = 0.0178). In contrast, QT205 (
sitABCD) was significantly more attenuated than QT1240 (
sitABCD
feoB) (P = 0.0061) in the liver. Taken together, these results demonstrate that, individually, the Sit system is most important for competitive survival and persistence compared to the Feo and MntH transporters. In addition, a cumulative loss of Sit and MntH transporters globally resulted in more marked attenuation than that with the loss of only the Sit transporter. In contrast, a cumulative loss of the Sit and Feo systems compared to the individual loss of Sit actually resulted in reduced persistence in the blood but increased colonization of the liver.
Sensitivity of E. coli strains to ROI-generating compounds.
The sensitivities of APEC strain
7122 and its mutant derivatives to ROI-generating compounds was assessed on both rich (LB) and minimal (M9-glucose) media (Fig. 5). On LB medium, only the
mntH
sitABCD (QT1239) strain was more sensitive than the wild-type parent strain to the ROI-generating compounds H2O2 (P = 0.002) and plumbagin (P = 0.027). On minimal medium, QT1239 was more sensitive to H2O2 (P = 0.015), plumbagin (P = 0.004), and paraquat (P = 0.004). On minimal medium, the
mntH mutant QT878 was more sensitive to H2O2 (P = 0.012) and paraquat (P < 0.001) than the APEC wild-type parent but was less sensitive to these products than the
mntH
sitABCD derivative. In addition, on minimal medium, the
feoB
sitABCD strain (QT1539) was also somewhat more sensitive to H2O2 (P = 0.007) than the wild-type parent. In contrast, the
sitABCD mutant QT205 did not demonstrate any increased sensitivity to ROI-generating products compared to the wild-type parent (data not shown).
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FIG. 5. Sensitivities of wild-type APEC strain 7122 and isogenic metal transport mutants to ROI-generating compounds. Strains were grown on either LB agar or M9 agar, and tests were performed as described in Materials and Methods. ROI-generating compounds tested were 30% hydrogen peroxide (H2O2), 53 mM plumbagin, 15 mM PMS or PES, and 40 mM paraquat. Paraquat was ineffective against all strains grown on LB medium, even at higher concentrations (up to 200 mM). Sensitivity to PES was similar to sensitivity to PMS (not shown). The results represent the means of replicate experiments for a minimum of three samples. Vertical bars represent the standard errors of the means. Only wild-type (WT) strain 7122 and its mutant derivatives that demonstrated a significant increase (P < 0.05) in sensitivity to ROI-generating products are indicated. APEC strains indicated in the legend are 7122 (7122 WT; ), QT878 (7122 mntH; ), QT1239 (7122 mntH sit; ), and QT1240 (7122 feoB sit; ). E. coli K-12 strains BW25113 (K-12 ), JW3933 (K-12 oxyR; ), and JW4023 (K-12 soxS; ) were used as comparative controls. For all conditions tested, K-12 strain BW25113 was significantly more sensitive (P < 0.05) to ROI-generating compounds than was APEC strain 7122.
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7122 was intrinsically more resistant to all of the ROI-generating compounds tested than the K-12 control strain following growth on either LB or minimal medium (P < 0.05) (Fig. 5). In addition, the APEC metal transporter mutants that were more sensitive to certain ROI-generating compounds were always resistant to PMS and PES. Compared to the other ROI-generating compounds, PMS and PES specifically generated a superoxide stress response, as the
soxS K-12 strain, but not the
oxyR derivative, demonstrated sensitivity to these compounds (Fig. 5). Taken together, these results demonstrate that the MntH and SitABCD divalent metal transporters synergistically contributed to increased resistance to ROIs that generate either a H2O2-specific or a mixed H2O2 and superoxide stress response. In contrast to the in vivo studies with chickens, in which the Sit transporter was the only system studied that individually contributed to virulence, in vitro only the MntH transporter was shown to individually contribute to resistance to oxidative stress. |
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7122. These transport systems are mainly involved in the import of manganese and/or ferrous iron. MntH is a proton-dependent NRAMP-related transporter that is highly selective for manganese (33, 41), FeoB is a GTPase that functions in ferrous iron transport (20, 31), and SitABCD (YfeABCD in Yersinia spp.) is an ABC transporter that mediates uptake of manganese and iron (3, 33, 56). Iron plays a number of vital functions in bacterial cells and is a cofactor of numerous enzymes (1). Importantly, iron plays a role in protection against oxidative stress, as it is a component of the SodB superoxide dismutase (SOD) and catalase enzymes, which eliminate superoxide (O2–) and H2O2, respectively. However, excess iron can also contribute to oxidative damage through the generation of free radicals (1). Due to the limited availability of iron in the host, pathogenic bacteria have acquired numerous iron transport systems, some of which are major virulence factors (5). Bacteria obtain ferric iron from the host via either siderophore systems, low-molecular-weight chelators that solubilize iron, or host iron transport protein receptors, whereas ferrous iron is transported by FeoB and SitABCD-like systems (5). Manganese is also a cofactor for a number of bacterial enzymes, contributes to protection against oxidative stress (33), and can contribute directly to the detoxification of ROIs (23). In E. coli and other enterobacteria, two main systems, MntH and SitABCD, have been identified as being involved in manganese transport (33, 41, 56). Since iron and manganese are critical for bacterial tolerance to oxidative stress as well as other metabolic functions, SitABCD, MntH, and FeoB could potentially promote bacterial survival during infection by facilitating the transport of these trace metals and by countering oxidative stress during infection of the host.
FeoB and MntH orthologs are widespread among a diverse population of bacteria (20, 49), and these systems are conserved among E. coli strains, as they are present in all the currently sequenced E. coli and Shigella genomes. Unlike feoB and mntH, sit genes are present in only a subset of E. coli strains. sit genes were predominant among ExPEC and APEC isolates and E. coli strains belonging to phylogenetic group B2 but were absent from E. coli K-12 and most diarrheagenic E. coli strains, except for enteroaggregative E. coli strain O42 (Fig. 1A; Tables 2 and 3). Among avian E. coli strains, we determined that sit genes were highly associated with the virulence of APEC for 1-day-old chicks (Table 3). This is the first report describing an association of sit genes with the virulence of APEC. In addition, sit genes were significantly associated with APEC (93%) compared to avian fecal commensal isolates (44%) (Table 3). Similarly, Rodriguez-Seik et al. (51) detected sit in 86.4% of APEC strains, compared to 42.7% of fecal commensal isolates from poultry. Overall, sit sequences are clearly prevalent among ExPEC and APEC strains compared to intestinal commensal E. coli strains.
In some E. coli strains, two or more copies of the sit genes are present, with one copy being carried on a plasmid and another copy being chromosomally carried (17, 27-29). Recently, Ewers et al. (17) also detected the specific presence of episomal and chromosomal copies of sit by PCR using specific primers. They detected 31.6% prevalence of sit among APEC strains by using chromosome-specific primers and 73.2% prevalence of sit among APEC strains by using episome-specific primers. These results suggest that APEC strains more commonly contain a plasmid-carried copy of sit than chromosomally carried sit genes. Chromosomal copies of sit genes are associated with different phage elements (Fig. 1A). Hence, in certain strains, sitABCD represents another virulence factor that may have been acquired via bacteriophages, which are common contributors to bacterial diversification and adaptability (8, 46). It is tempting to speculate that recombination or integration events within a single strain may have led to the duplication of sit genes. However, comparative sequence analysis demonstrates higher identity among sit sequences located in genomic islands from different strains than between genomic island- and plasmid-carried sit sequences from the same strain (Fig. 1B). These findings favor the likelihood that sit genes may have been acquired independently from different sources by distinct events resulting in the incorporation of these genes into either plasmids or prophage-associated genomic islands in the genomes of Shigella and ExPEC.
The increased association of sit genes with ExPEC and APEC compared to other E. coli strains suggested a possible role for this transporter in virulence during extraintestinal infection. In UPEC strain CFT073, sit genes were upregulated in the urines of mice during urinary tract infection or in vitro following growth in human urine (63). Also, in Shigella flexneri 2a, the expression of sit genes was upregulated during infection of cells (39, 54). This further suggests that SitABCD may contribute to metal transport in vivo and to virulence during extraintestinal infections. In both the single-strain infection and competitive infection models, the APEC
sitABCD mutant was clearly attenuated and less able to colonize the tissues and persist in the blood of infected chickens (Fig. 2 to 4). In contrast, the single-strain infection and coinfection results demonstrated that in the presence of a functional SitABCD transporter, the inactivation of FeoB or MntH did not reduce the virulence of APEC strain
7122. In addition, the combined loss of feoB and mntH did not reduce virulence. Hence, in contrast to the MntH and FeoB transporters, the Sit transporter contributed significantly to the survival of APEC in extraintestinal tissues. These results indicate that the divalent-ion transporter SitABCD imparts a selective advantage compared to the MntH or FeoB transporter in vivo. The infection model used for these studies was the air sac inoculation model (15, 16), which has been shown to result in a more uniform rate of infection of extraintestinal tissues and blood than that obtained with the more natural aerosol route of infection (18, 64). However, by using the air sac route in the single-strain infection model, despite the significantly decreased survival of the
sitABCD mutant in chickens, this strain caused gross lesions of airsacculitis and pericarditis/perihepatitis that were similar to those caused by the wild-type parent. This is likely because the attenuated strains remained in the tissues at levels of 3 log or above at 48 h postinfection in most birds. Such bacterial levels are likely to be sufficient to still elicit a strong inflammatory response and the generation of gross lesions. It is possible that the use of the aerosol route in single-strain infection experiments could potentially demonstrate differences in pathology of colibacillosis between strains that were not observed via the air sac route, as the aerosol route requires APEC to initially colonize and proliferate in the upper respiratory tract and then subsequently invade deeper tissues.
The use of the competitive infection model provided increased sensitivity compared to that of the single-strain infections. This was most evident in analyses of mutants that had lost both SitABCD and MntH divalent manganese transport functions or SitABCD and FeoB divalent iron transport functions (Fig. 3 and 4). No significant difference at any site was observed in the single-strain infections by comparing these double mutants to the mutants which lacked the Sit transporter alone. This is likely due to the combination of competitive pressure between strains, in addition to pressures due to immune defenses and nutritional limitations within the host, in the competitive infection model (52, 65).
The contribution of Sit to the virulence of APEC may be due in large part to its function as an efficient manganese transporter (56) and to the importance of manganese for coping with oxidative stress. Cellular accumulation of manganese contributes to protection against oxidative stress by direct catalytic scavenging of ROIs and can also lead to increased activity of bacterial manganese-dependent SOD (MnSOD) (23). In E. coli, MnSOD, encoded by sodA, is an inducible SOD that responds to increases in oxidative stress, and MnSOD more effectively protected E. coli against paraquat and H2O2 than did FeSOD, encoded by sodB (7). An efficient capacity to accumulate Mn by APEC via the Sit and MntH transporters is therefore likely to contribute to survival in host extraintestinal sites. The infection results demonstrated that loss of MntH alone had no discernible effect on virulence in the chicken, whereas loss of Sit alone did reduce virulence. Conversely, MntH alone contributed to protection of APEC against ROIs, whereas Sit alone had no significant contribution to resistance to oxidative stress in vitro (Fig. 5). This may be explained by differences in environmental conditions, which may affect the activity of each of these transport systems. MntH transports metals via a proton-dependent gradient and, as such, functions best under acidic conditions (32). In contrast, Sit-mediated transport is most efficient under alkaline conditions (32, 56). The pH in chicken blood and tissues is maintained at approximately 7.4, a pH at which Sit efficiently mediates Mn transport (4, 56). It is also possible that the ATPase-mediated Sit ABC transporter may be more effective at tolerating stresses within the host that could impede the proton gradient required for proper functioning of MntH-mediated transport. Although Sit alone appeared to be more important than MntH in vivo, it is clear that the combined loss of the Sit and MntH transporters resulted in the greatest attenuation, particularly in the lung, and in greater sensitivity to a number of ROI-generating compounds. Taken together, these results support a synergistic role for Sit and MntH to transport manganese and contribute to a greater overall resistance to oxidative stress and persistence during infection.
Loss of Sit and MntH rendered the APEC strain more susceptible to a number of ROI-generating compounds, particularly on minimal medium (Fig. 5). Manganese transporters in a number of bacteria have been shown to contribute to resistance to H2O2 and superoxide (23). As observed for Salmonella enterica serovar Typhimurium and Shigella flexneri 2a mntH sit mutants (4, 53), the APEC
mntH
sitABCD mutant was more sensitive to H2O2 (Fig. 5) (56). In addition, the APEC
mntH
sitABCD mutant was also more sensitive to certain redox cycling agents, including plumbagin and paraquat. These compounds generate superoxide radicals, but superoxide can be converted readily into H2O2 by SODs within bacterial cells. The use of
oxyR and
soxS K-12 control strains, which were both more sensitive to plumbagin and paraquat, also suggested that subsequent generation of H2O2 occurred following exposure to these compounds. In contrast, neither APEC
mntH
sitABCD nor the
oxyR control was more sensitive to phenazines (PMS and PES) than the relevant parent strain, although these compounds more effectively killed the
soxS control. Differences in sensitivity to redox cycling agents may therefore be due to their mechanisms of action for generation of oxidative stress or possibly other toxic effects. In E. coli, the response to oxidative stress generated by PMS differs considerably from that generated by paraquat or plumbagin, with PMS generating a high level of catalase activity and little increase in SOD activity, whereas paraquat and plumbagin induce increases in both SOD and catalase activities (21, 60).
Although the Sit transporter from APEC strain
7122 was shown to mediate uptake of iron in an iron transport-deficient E. coli K-12 mutant (56), it is unlikely that iron transport by SitABCD is a key feature of APEC virulence. Strain
7122 uses three confirmed siderophore systems (aerobactin, salmochelins, and enterobactin) in addition to the Feo and SitABCD transporters. Elimination of the aerobactin and salmochelin siderophore systems resulted in a nearly complete loss of persistence of APEC strain
7122 in chickens (15), suggesting that the remaining iron transport systems (FeoB, SitABCD, and enterobactin) were unable to meet the iron transport requirements for survival of APEC during extraintestinal infection. This is not surprising, since FeoB and SitABCD function mainly as ferrous iron transporters (20, 56), and iron present in extraintestinal tissues is predominantly ferric iron associated with host ferro-proteins. Furthermore, although enterobactin is a highly efficient siderophore in vitro, it competes poorly as a siderophore in host tissues (1, 5). The finding that the cumulative loss of the Sit and Feo ferrous iron transporters did not result in greater attenuation than that of the
sitABCD mutant is in further support of a limited requirement of these systems for iron acquisition in extraintestinal tissues (Fig. 3). However, the combined loss of Sit and Feo resulted in a decreased capacity to persist in the blood (Fig. 4). It is possible that in the blood, where iron availability is minimal, the ferrous transport functions of Feo and Sit in combination with efficient ferric siderophore systems could provide a modest competitive edge. Furthermore, the combined loss of Feo and Sit also increased the sensitivity to hydrogen peroxide (Fig. 5), suggesting the cumulative importance of these two transporters under certain conditions. In contrast, combined loss of Sit and Feo actually resulted in a significant regain in colonization of the liver compared to that of the
sitABCD mutant in the competitive coinfection model (Fig. 3c). The liver functions in iron storage and recycling. During infection, increased cell death and tissue necrosis in the liver may lead to localized tissue anoxia and increased availability of ferrous iron at lesion sites. Under anaerobic conditions and with increased availability of ferrous iron, the Feo transporter may therefore be deleterious. In support of this, compared to its wild-type parent, an E. coli K-12 feo mutant grown anaerobically was more resistant to H2O2-mediated killing than its isogenic parent strain (34).
In APEC, the sit genes are commonly located on large conjugative (ColV or ColBM) plasmids (17, 27, 29, 56, 59). The roles of such plasmids in various APEC or pathogenic E. coli strains have been established in a number of reports (16, 18, 24, 61, 62, 64), although specific plasmid-carried genes contributing to APEC virulence are less well characterized. The Sit transporter, along with the aerobactin and salmochelin siderophores (15) and Tsh (16), represents another plasmid-encoded virulence factor of APEC strain
7122. Compared with the divalent manganese or iron transporter MntH or FeoB, the importance of SitABCD iron and manganese transport for virulence of APEC is preponderant. Hence, in addition to providing an advantage for intracellular survival for Salmonella enterica and Shigella flexneri 2a, in APEC Sit appears to provide an adaptive advantage during extraintestinal survival. The reduction in virulence together with the increased sensitivity to ROI-generating compounds observed for some of the APEC metal transport mutants suggests that reduced survival during infection could possibly be due to increased killing by phagocytes or the products they may liberate into the extracellular environment. Although APEC strain
7122 is refractory to internalization by avian phagocytes, APEC strains belonging to other serogroups, such as O2 or O1, are more readily internalized and can survive within phagocytes (44). In future studies, it will be interesting to determine if Sit contributes to increased survival of certain APEC strains within host cells and its potential role in the virulence of ExPEC in human extraintestinal infections.
Funding for research was provided by the Natural Sciences and Engineering Research Council (NSERC), Canada, the Canadian Foundation for Innovation (CFI), and a Canada Research Chair (CRC) to C.M.D. and by USDA grant 00-35204-9224 to R.C. and C.M.D. M.S., M.C., and M.H.L. were the recipients of Fondation Armand-Frappier scholarships. J.P. was funded by a scholarship from Fonds de la Recherche en Santé Québec (FRSQ).
Published ahead of print on 19 November 2007. ![]()
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