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Infection and Immunity, April 2008, p. 1590-1598, Vol. 76, No. 4
0019-9567/08/$08.00+0 doi:10.1128/IAI.00987-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain,1 Centre de Recerca en Sanitat Animal (CReSA), Bellaterra, 08193 Barcelona, Spain,2 Servei d'Anàlisis i d'Aplicacions Microbiològiques, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain3
Received 19 July 2007/ Returned for modification 3 October 2007/ Accepted 2 January 2008
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ATP-binding cassette (ABC) transporters are widespread in living organisms and comprise one of the largest protein families. In bacterial cells, these transporters import a variety of allocrites, including metal ions (9, 17). ABC transporters are multicomponent systems consisting of two membrane-inserted subunits, two components inside the cytoplasm that carry the ATP-binding site, and the substrate-specific binding protein located outside the cytoplasm (3, 11). In gram-negative bacteria, the binding protein is a soluble periplasmic protein. In gram-positive bacteria and archaea, it is a lipoprotein with a characteristic N-terminal lipid anchored to the cytoplasmic membrane. This lipoprotein is the ABC transporter component that is most exposed outside the cell surface (20, 31).
ABC transporters related to divalent-cation uptake have been shown to be involved in the virulence of many gram-negative and gram-positive bacteria (19, 22). Furthermore, several components of these ABC systems present in the cell wall, especially molecules such as lipoproteins, have immunogenic properties against the bacterial species from which they are derived (10, 23). For this reason, it has been suggested that these molecules have putative protective abilities (17), and this has been confirmed in some bacterial species, such as Yersinia pestis (34).
The entire genome of the S. suis 89/1591 virulent strain belonging to serotype 2 has been sequenced, and annotation of the sequence is near completion. Taking advantage of this fact, we searched the S. suis draft annotation database for genes encoding putative components of predicted divalent-cation-binding ABC transporters to analyze the immunogenicity and protective properties of these proteins, as well as the regulatory mechanism behind their expression.
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and BL21-CodonPlus(DE3)-RIL were grown in Luria-Bertani medium (26). When necessary, ampicillin (50 µg/ml), chloramphenicol (34 µg/ml), and 1 mM isopropyl-β-D-thiogalactopyranoside (IPTG) (Roche) were added to the growth media. S. suis strain 89/1591 was grown in Todd-Hewitt (TH) (Difco) medium supplemented with 2% yeast extract (Difco). All cultures were incubated at 37°C, and agitation was used for E. coli but not for S. suis. The divalent-cation chelator 2,2'-dipyridyl (DPD) (Sigma) was added at a final concentration of 150 µM to TH broth 30 min before inoculation of S. suis cells. DNA extraction, cloning, transformation, and other molecular techniques used in this work were carried out as previously described (29). |
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TABLE 1. Bacterial strains and plasmids used in this study
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cells. Recombinant plasmids were predicted to express an N-terminal His6-tagged fusion protein, and correct in-frame fusions of the protein genes in pET15b were confirmed by sequencing plasmid DNA with the T7 Promoter and T7 Terminator primers (Macrogen Sequencing Service). Recombinant plasmids were then used to transform strain BL21-CodonPlus(DE3)-RIL. |
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TABLE 2. Primers used in this study
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Both the crude extracts of E. coli BL21-CodonPlus(DE3)-RIL cells overexpressing the proteins of interest and the purified proteins were visualized by Coomassie blue staining of sodium dodecyl sulfate-polyacrylamide gels. The antigenicity of the proteins was analyzed by Western blotting as described previously (18).
Mobility shift assays and DNase I footprinting. Electrophoretic mobility shift assays (EMSA) were performed as previously described (6), with slight modifications. Briefly, DNA promoters were PCR amplified from S. suis genomic DNA using suitable oligonucleotide primers (Table 2), and the purified PCR fragments were cloned into the pGEM-T vector. The presence of the desired promoter was confirmed by sequencing the plasmid DNA using the M13F-pUC(–40) and M13R-pUC(–40) primers of the pGEM-T vector. DNA probes were prepared by PCR amplification with one of the primers labeled with digoxigenin (DIG) at its 5' end and were purified. DNA-protein reaction mixtures (20 µl) containing 25 ng of a DIG-labeled DNA probe and either 0 or 10 µg of purified S. suis AdcR protein were incubated in EMSA buffer (20 mM Tris-HCl [pH 8], 50 mM KCl, 5% [vol/vol] glycerol, 1 µg bulk carrier sperm salmon DNA, 0.5 mM 1,4-dithiothreitol, 0.1 mg bovine serum albumin per ml) for 10 min at room temperature.
To determine whether AdcR binding was divalent cation dependent, 5x EMSA buffer was supplemented with EDTA at a final concentration of 1 mM in the presence or absence of either Zn2SO4, Mn2SO4, or Fe2SO4 (each at a final concentration of 1 mM). DNA-protein complexes were visualized by separation on a 5% nondenaturing polyacrylamide gel (40 mM Tris-acetate) at 150 V for 1.5 h and then transferred to a Biodine B nylon membrane (Pall Gelman Laboratory). DIG-labeled DNA-protein complexes were detected using the manufacturer's protocol (Roche). DNase I footprinting assays were carried out using an ALF sequencer (Amersham Biosciences) as described previously (7).
RNA techniques. RNA was isolated as described previously (15), with slight modifications. Briefly, 10-ml S. suis cultures in the mid-exponential growth phase (OD600, 0.6) were collected by centrifugation at 8,000 x g for 10 min. The cells were then resuspended by vigorous vortexing at 37°C for 10 min in 300 µl of prelysis buffer containing 10 mg of lysozyme per ml. Total RNA was extracted by using an RNeasy mini kit (Qiagen) according to the manufacturer's instructions. DNA contamination was removed from the RNA during purification by treatment with RNase-free DNase (Qiagen), followed by digestion with DNase Turbo (Ambion). The concentration and integrity of the RNA were determined by measuring the OD260 and by 1% agarose gel electrophoresis, respectively. Reverse transcriptase PCR (RT-PCR) assays were performed using a Titan One Tube RT-PCR system (Roche) by following the manufacturer's instructions. Real-time RT-PCR analysis of gene expression either in the presence or in the absence of the divalent-cation-chelating agent DPD was performed for all genes as reported previously (8); specific internal oligonucleotide primers were used for each gene (Table 2). In all cases, the absence of DNA in RNA samples was tested by performing PCR without RT.
Serum preparation and protection assays. Female BALB/cAnNHsd mice (3 weeks old) obtained from Harlan Iberica (Barcelona, Spain) were used for serum preparation and protection assays. All animals were quarantined for 1 week. A maximum of four animals per cage were housed under specific-pathogen-free conditions at 19 to 21°C with an artificial cycle consisting of 12 h of light and 12 h of darkness; the relative humidity was 50 to 60%. Antibiotic-free pelleted food and autoclaved water were provided ad libitum during the experiments. The animals were monitored daily for morbidity and mortality. All animal experiments were approved by the Universitat Autònoma de Barcelona Animal Ethics Committee.
Purified and dialyzed SsuiDRAFT 0103, SsuiDRAFT 0174, and SsuiDRAFT 1237 proteins were resuspended in 50 mM sodium phosphate (pH 7.0) and quantified by the Lowry method using bovine serum albumin as a protein standard. To prepare the vaccines, 10 µg of each protein per dose was adsorbed with Imject alum adjuvant (aluminum hydroxide; Pierce) according to the manufacturer's protocol.
To obtain serum for Western blot assays, six 4-week-old female BALB/cAnNHsd mice were inoculated with 0.1 ml of a TH broth suspension containing the 50% lethal dose (LD50) (2.9 x 106 CFU/animal) of strain S. suis 89/1591 (2) or 0.1 ml of TH broth alone as a negative control. Animals that survived until 30 days postinoculation were anesthetized with ketamine/xylacine. Blood was collected by cardiac puncture, incubated at 37°C for 2 h to facilitate clot formation, and then centrifuged at 300 x g for 10 min. Serum was recovered and stored at –20°C for Western blot assays.
For protection assays, three groups of eight female 4-week-old BALB/cAnNHsd mice were inoculated intraperitoneally with 0.1 ml of SsuiDRAFT 0103, SsuiDRAFT 0174, or SsuiDRAFT 1237 protein. Two additional groups of eight mice each inoculated with 0.1 ml of either 50 mM sodium phosphate (pH 7.0) or the same solution with Imject alum adjuvant as negative controls. After 2 weeks, a second immunization was carried out, followed 3 weeks later by a challenge consisting of intraperitoneal injection of 0.1 ml of a suspension containing 20 LD50s of the S. suis 89/1591 strain in TH broth supplemented with 10% inactivated bovine serum. The survival of the mice was subsequently monitored for 21 days.
Statistical analysis. Fisher's exact test was used to analyze the statistical significance of the lethal challenge data.
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FIG. 1. (A) ORFs of the S. suis 89/1591 genome whose products have been predicted to be involved in divalent-cation uptake according to the provisional annotation of the genome of this organism. The lengths of the gene products (in amino acids [aa]) and the putative functions of the genes are also indicated. (B and C) Genetic organization, as determined by RT-PCR analysis of RNA, of S. suis 89/1591 chromosomal regions containing ssuiDRAFT 1237 (B) and ssuiDRAFT 0174 ORFs (C). The large filled arrows indicate the putative transcriptional units that have been tested. The primer sets used for the RT-PCR analyses are indicated by small arrows. RT-PCRs were carried out in the presence of total RNA (lanes A), in the presence of DNA (lanes B), or in the absence of both RNA and DNA (lanes C). BstEII-digested DNA was used as molecular size marker (lane MW).
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FIG. 2. DPD-mediated induction of several S. suis 89/1591 ORFs in the transcriptional units that include the ssuiDRAFT 0103, ssuiDRAFT 0174, and ssuiDRAFT 1237 ORFs. The induction factor is the ratio of the mRNA concentration of a gene from cells treated with DPD (150 µM) to the mRNA concentration of the gene from cells not treated with DPD. RNA was extracted from DPD-treated and nontreated cultures at an OD600 of 0.6. The amount of mRNA of each gene was determined by using a standard curve generated by amplification of an internal fragment of the S. suis ssuiDRAFT 0855 ORF encoding the cysteine synthase enzyme, whose expression is not sensitive to divalent-cation deprivation. The results are the means of two independent experiments (each carried out in duplicate); the standard deviations are indicated by error bars.
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FIG. 3. (A) Schematic diagram of the adcR gene with its promoter region (PadcR). The small arrows indicate the primer pair used to amplify the promoter in EMSA experiments. (B) Electrophoretic mobility of the DNA fragments containing the S. suis adcR promoter in the absence (lane 1) or in the presence (lane 2) of purified S. suis AdcR. The effects of a 300-fold molar excess of unlabeled S. suis adcR promoter (lane 3) or pGEM-T plasmid DNA (lane 4) on the migration of the S. suis adcR promoter in the presence of purified AdcR are also shown. (C) Effects of EDTA addition (1 mM) on the AdcR-binding capacity in the absence of exogenous divalent cation (lane 2) or in the presence of either 1 mM Zn2+ (lane 3) or 1 mM Mn2+ (lane 4). As a control, the mobility of the same promoter without AdcR is also shown (lane 1).
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FIG. 4. (A) DNase I footprinting assays with coding and noncoding Cy5-labeled strands of the DNA fragment containing the S. suis adcR promoter in the absence or presence of purified AdcR from the same organism. The putative translational starting codon is indicated by bold type and underlining. The arrows indicate the transcriptional direction of the strands. (B) Single-nucleotide substitutions in the TTAACAAGTTAA sequence (AdcR Box) and their effects on the electrophoretic mobility of the S. suis adcR promoter. The wild type (wt), used as a positive control, consisted of the same fragment without nucleotide substitutions. The plus sign indicates the position at which an additional nucleotide (+N1) was added. Inverted arrows indicate the palindromic motifs. The deduced consensus sequence is also shown.
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FIG. 5. (A) Schematic diagram of the ssuiDRAFT 0103 gene with its promoter region (P0103). The small arrows indicate the primer pair used to amplify the promoter in EMSA experiments. (B) Electrophoretic mobility of the DNA fragment containing the S. suis ssuiDRAFT 0103 promoter in the absence (lane 1) or in the presence (lane 2) of purified S. suis AdcR. The effects of a 300-fold molar excess of unlabeled S. suis ssuiDRAFT 0103 promoter (lane 3) and pGEM-T plasmid DNA (lane 4) on the migration of the S. suis ssuiDRAFT 0103 promoter in the presence of purified AdcR are also shown.
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FIG. 6. Western blot analysis with serum recovered from mice infected with the S. suis 89/1591 strain. The analysis was carried out with crude extracts from E. coli BL21-CodonPlus(DE3)-RIL cells containing the pET15b vector either alone as a negative control (lane 1) or overexpressing the SsuiDRAFT 0103 (lane 2), SsuiDRAFT 0174 (lane 3), and SsuiDRAFT 1237 (lane 4) proteins.
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FIG. 7. Survival curves for mice inoculated with solvent (*) or solvent with adjuvant ( ) and vaccinated with purified SsuiDRAFT 103 ( ), SsuiDRAFT 174 ( ), or SsuiDRAFT 1237 ( ) protein (eight mice per group). After the last immunization, the mice were challenged intraperitoneally with an amount of wild-type S. suis 89/1591 cells equivalent to 20 LD50s of this bacterial strain.
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In this work, after searching the draft annotation database of the S. suis 89/1591 strain genome, we identified three genes (ssuiDRAFT 0103, ssuiDRAFT 0174, and ssuiDRAFT 1237) encoding putative components of divalent-cation uptake-related ABC transporters. The ORF belonging to the transcriptional unit containing one of these three genes and encoding AdcR was identified. This protein had been demonstrated previously to be an in vivo repressor controlling the genes involved in Zn2+ and/or Mn2+ incorporation in streptococci (9, 13, 25), and a putative recognition motif was proposed following in silico analysis (28). Data reported here effectively demonstrated, for the first time, not only that the in silico-predicted motif (TTAACYRGTTAA) is very similar to the in vitro functional binding sequence (TTAACNRGTTAA) but also that AdcR binding to its target sequence is dependent, at least in vitro, on the presence of either Zn2+ or Mn2+ but not on the presence of Fe2+. Likewise, our results indicated that the distance between the two palindromic halves of the AdcR-binding sequence must be strictly preserved. Nonetheless, as described above, despite the close relationship among all gram-positive bacteria, the regulation of Zn2+ uptake differs dramatically with respect to DNA recognition motifs. This finding suggests two different origins for Zn2+ uptake regulatory proteins in this bacterial phylum.
The results presented in this work also demonstrated that the product of the ssuiDRAFT 0103 gene belonging to the S. suis adcR regulon, which constitutes a single transcriptional unit, not only is immunogenic but also confers a statistically significant level of protection against S. suis challenge to mice vaccinated with this protein. Two other S. suis envelope proteins (SsuiDRAFT 0174 and SsuiDRAFT 1237), encoded in two independent polycistronic transcriptional units, with antigenic capacity but less protective power than the SsuiDRAFT 0103 protein were also identified. The reduced protective ability of these two proteins might be due, for example, to a less important role in divalent-cation uptake, or their exposure to the external medium may not be as extensive as that of the ssuiDRAFT 0103 ORF. However, since animals inoculated with S. suis produced antibodies against the three proteins, a combination or even only one of them might form the basis of a simple serological test for detecting S. suis infections on animal farms. Furthermore, it must be noted that although the expression of the ssuiDRAFT 0103, ssuiDRAFT 0174, and ssuiDRAFT 1237 ORFs was induced in the presence of the chelating agent DPD, only the ssuiDRAFT 0103 and ssuiDRAFT 1237 ORFs were under AdcR control. These data suggest that there is a second regulator of divalent-cation uptake, which controls at least ssuiDRAFT 0174 expression.
It is well known that many bacterial envelope proteins involved in iron uptake are immunogenic and that some of them are protective (4, 5). Similar results have been reported for some divalent-cation uptake systems other than the iron uptake systems (27, 32, 33). Nevertheless, data presented in this work are the first data to demonstrate that proteins belonging to the adcR regulon may be useful as vaccines. Finally, the fact that TBLASTN analysis confirmed that genes homologous to the ssuiDRAFT 0103 ORF are present in practically all streptococci for which sequence data are available (data not shown) suggests that the encoded product can be used as a tool to achieve broad protection against this significant pathogenic group of gram-positive bacteria.
We thank Joan Ruiz for his excellent technical assistance.
Published ahead of print on 22 January 2008. ![]()
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