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Infection and Immunity, May 2008, p. 2044-2050, Vol. 76, No. 5
0019-9567/08/$08.00+0 doi:10.1128/IAI.00035-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Institute of Medical Microbiology, University of Zürich, Zürich, Switzerland,1 Institute for Medical Microbiology and Hygiene, University Hospital—Tübingen, Tübingen, Germany,2 University of Wales—Swansea, Swansea, United Kingdom,3 Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany4
Received 10 January 2008/ Returned for modification 18 February 2008/ Accepted 6 March 2008
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Biofilm formation is a multistep process, characterized by attachment of the cells to a surface by physicochemical interactions, which is followed by growth-dependent intercellular accumulation, glycocalyx formation, maturation of the biofilm, and finally escape of the bacteria from the biofilm (22). Besides the overall cell charge and hydrophobicity, which can affect initial attachment to various surfaces, staphylococci possess an impressive number of surface-associated adhesins (microbial surface components recognizing adhesive matrix molecules, or MSCRAMMS) to adhere to the host's matrix proteins (20). The genetic and molecular basis of biofilm formation in staphylococci is multifaceted (reviewed in reference 39), and the composition of the polymeric biofilm matrix is complex and varies from strain to strain (9).
An important component of many S. epidermidis biofilms is the polysaccharide intercellular adhesin, PIA, also termed polymeric N-acetylglucosamine (PNAG), which is synthesized by the icaADBC-encoded proteins (34, 35). PIA is also produced by S. aureus (13), and the ica operon appears to be present in virtually all S. aureus strains (17, 29, 46). However, the role and importance of PIA in different clinical settings are not completely understood (46). Biofilm formation can also occur in several PIA-independent ways (2): The teichoic acids, surface-exposed charged polymers, which constitute an important part of the S. aureus cell wall, function in primary adherence (23, 57) and are a component of the biofilm matrix as well (49). Proteinaceous factors also contribute significantly to primary attachment and/or promote biofilm formation. Among them are the bifunctional autolysin Atl, which is involved in cell separation (4, 24); possibly also the related cell wall-associated proteins SasG and Pls (12); the biofilm-associated protein Bap, which is mainly found in bovine S. aureus lineages (31); and the aggregation-associated protein Aap from S. epidermidis, which, upon proteolytic processing, induces a PIA-independent biofilm-positive phenotype (47). Functions in biofilm formation were reported also for
-hemolysin, a secreted toxin, but required for cell-cell interactions and biofilm formation (5), as well as for FmtA (16, 55), a penicillin-binding-like protein that plays a role in methicillin resistance (30). Besides proteins, extracellular DNA (eDNA) seems to be a major structural component in staphylococcal biofilms (26, 42, 44).
The regulation of biofilm formation is complex and is influenced by various regulatory systems. The alternative stress sigma factor
B is important in biofilm formation in S. epidermidis but plays a minor role in S. aureus (29, 56). The staphylococcal accessory regulator SarA, which controls the synthesis of certain virulence factors directly or via the agr system and which itself is partly controlled by
B, is essential for biofilm formation in several S. aureus strains (1). Mutations of the accessory gene regulator (agr) were found to affect biofilm formation in some but not all S. aureus strains analyzed (40). A two-component system which positively controls biofilm formation in S. aureus is WalK/WalR, also known as YycG/YycF (15), which plays an important role in cell wall modeling through activation of several genes involved in cell wall degradation.
Several environmental factors have been reported to affect biofilm formation (reviewed in references 22, 33, and 39). Anaerobiosis stimulates ica transcription in S. aureus (14), and growth of S. aureus during infection of a host results in higher PIA production than under in vitro conditions (37). The relative amounts of extracellular PIA and teichoic acids depend on growth conditions such as the choice of the medium or on agitation (49). Especially the presence of sugars seems to play an important role in the stimulation of this process (18, 29). The impact of glucose in the induction of biofilm formation in S. aureus is also reflected by the fact that most of the biofilm adherence assays used in previous studies included high concentrations of either glucose or sucrose (1, 5, 13, 14, 19, 27, 32, 51, 54). Rbf, a member of the AraC/XylS family, was recently suggested to be involved in the regulation of the multicellular aggregation step of S. aureus biofilm formation in response to glucose or salt (32).
We recently showed the impact of the catabolite control protein A (CcpA) on carbon metabolism, up-regulation of certain virulence determinants, and resistance to cell wall-directed antibiotics (50). Since the activity of CcpA is activated in the presence of glucose or sucrose (27), and since CcpA was shown to affect biofilm formation in Bacillus subtilis and Streptococcus mutans (7, 53, 58), we wondered about its role in biofilm formation in S. aureus.
In this study, we deleted the ccpA gene in strain SA113, a biofilm former known to produce PIA (13). We show that, depending on the growth medium, SA113 was able to form a strong biofilm and that the deletion of ccpA reduced its biofilm formation capacity and PIA production.
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TABLE 1. S. aureus strains and plasmids used in this study
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TABLE 2. Primers used in this study
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Biofilm formation under flow conditions was determined basically as described by Beenken et al. (1) using TSB supplemented with 1% glucose, uncoated three-channel flow cells (total volume, 160 µl), and a flow rate of 0.5 ml min–1 for 24 h.
Growth was monitored in 10-ml glass test tubes containing 2 ml of TSB supplemented with 1% glucose and inoculated 1:200 with preculture. Cells were grown for 18 h at 37°C with shaking (180 rpm).
Biofilm stability against protease, sodium metaperiodate, and DNase I treatment. Biofilm stability assays were carried out in Nunc 12-well plates as described by Toledo-Arana et al. (54), using the growth conditions described above and TSB supplemented with 1% glucose. After 18 h, the medium was removed and substituted with fresh medium supplemented with either 100 µg/ml protease K or 10 mM of sodium metaperiodate and incubated for 2 h at 37°C. Medium without supplement served as a negative control. To test the impact of DNase I, cells were treated as described by Rice et al. (44). Briefly, cells were grown in TSB supplemented with 1% glucose in the presence of 140 U/ml RNase-free DNase I (Fluka, Switzerland) in test tubes or in Nunc plates for 18 h at 37°C. Addition of DNase I had no effect on the growth rates of cells grown in liquid culture.
Growth on CRA. Congo red agar (CRA) screening was performed basically as described by Knobloch et al. (29). Cells grown on blood plates were diluted to McFarland standard of 0.5, stamped on plates made of TSB agar supplemented with 1% glucose and 0.08% Congo red, and incubated for 18 h at 37°C. MICs of Congo red were determined by broth microdilution modified according to CLSI guidelines (11) in TSB supplemented with 1% glucose.
PIA determination. PIA production was monitored by analyzing the cell surface extracts from cultures grown for 2 and 8 h in TSB supplemented with 1% glucose. PIA was extracted as described by Cerca et al. (6). Detection was performed using a rabbit polyclonal anti-PIA antibody (19) after blocking with human immunoglobulin G.
Primary adherence measurements. Primary adherence was measured by diluting cells in the stationary growth phase in TSB supplemented with 1% glucose to obtain approximately 30 CFU/ml. Two milliliters of the appropriate dilutions was added to Nunc Delta six-well-plates and incubated for 30 min at 37°C. In parallel, cells were plated on blood plates to determine the original number of cells applied to the microtiter plates. The six-well plates were rinsed gently three times with 5 ml of sterile phosphate-buffered saline (pH 7.4) and covered with 3 ml of molten BHI agar (0.8%). Primary attachment was expressed as a percentage of CFU on the six-well-plates compared to the CFU on blood plates.
Quantification of icaA transcription. The icaA and gyrB transcripts were quantified by LightCycler reverse transcription-PCR as described earlier (19) using RNA samples obtained from cultures grown for 2 and 8 h in TSB supplemented with 1% glucose at 37°C and 200 rpm.
Northern blot analyses. For Northern blot analyses, cells were grown in TSB supplemented with 1% glucose and harvested after 2 h of growth, with both both wild type and mutant having reached an optical density at 600 nm of approximately 0.4. Cells were centrifuged for 2 min at 12,000 x g, and cell sediments were snap-frozen in liquid nitrogen. RNA isolation and Northern blotting were performed as described earlier (36). The primer pairs used to generate digoxigenin-labeled arlRS-, citB-, citZ-, rbf-, cidA-, mgrA-, atl-, and sarA-specific probes by PCR labeling are shown in Table 2. All Northern blot analyses were performed at least twice on independently isolated RNA samples. An internal 0.5-kb fragment of the 16S rRNA genes (nucleotides 2232818 to 2233328 of GenBank accession no. CP000046) was used to probe the 16S rRNA gene as a loading control.
Triton X-100-induced autolysis assays. Autolysis assays were performed as described by Fournier and Hooper (21). Bacteria were grown in TSB supplemented with 1% glucose for 2 h. Cells were pelleted by centrifugation and resuspended in 50 mM Tris-HCl (pH 7.5)-0.1% Triton X-100 to obtain an A600 of approximately 1. The cells were then incubated at 30°C with shaking, and changes in A600 and CFU were monitored. Results were normalized to CFU at time zero (CFU0): i.e., % living cells at time t = (CFU at time t/CFU0) x 100.
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FIG. 1. (A) Quantification (A530) of biofilm formation of strain SA113 in different media in response to glucose. Results represent the averages of at least three independent experiments. Error bars indicate the standard deviation of the mean A530. * and **, P < 0.05 and P < 0.01, respectively, for unsupplemented versus supplemented cultures. The media contained the following concentrations of glucose and NaCl before glucose addition: TSB, 0.25% glucose and 0.5% NaCl; BHI, 0.2% glucose and 0.5% NaCl; and LB, 0% glucose and 1% NaCl. (B) Biofilm stability assays of SA113. Preformed biofilms were treated for 2 h with either sodium metaperiodate (10 mM) or proteinase K (100 µg/ml). For the DNase I stability assay, SA113 cells were grown for 18 h in the presence or absence of 140 U/ml DNase I.
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When strain SA113 was grown in glass tubes in TSB supplemented with 1% glucose, cells clumped together and sank to the bottom of the tube, leading to a clearance of the medium (Fig. 2). We analyzed this effect in the ica-negative strain SA113
ica (13), which remained cloudy after growth in glass tubes in TSB supplemented with 1% glucose (Fig. 2), indicating, that the clumping might be due to PIA production. Interestingly, addition of DNase I (140 U/ml) to the growth medium suppressed the clumping as well (data not shown), suggesting that clumping requires the simultaneous presence of PIA and eDNA.
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FIG. 2. Growth phenotype of SA113, KS66 ( ccpA), KS66 trans-complemented with plasmid pMST1 (compl.), and SA113 ica ( ica) grown for 18 h at 37°C in glass tubes in TSB (– Glc) or TSB supplemented with 1% glucose (+ Glc).
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ccpA mutants were similar. For demonstration of biofilm formation of strain DSM 20231, the plates had to be precoated with 20% human plasma. The deletion of ccpA significantly reduced the biofilm formation capacity of the mutants under the respective static conditions (Fig. 3A [only SA113 shown]), and complementation of the
ccpA mutants in trans, using pMST1, which contains the wild-type ccpA allele, restored the biofilm formation capacities of both mutants to wild-type levels (Fig. 3A [only SA113 shown]). Transformation of the mutants with the empty control vector had no effect (data not shown), signaling that the decrease in biofilm formation observed in the
ccpA mutants was due to the deletion of ccpA. Biofilm formation for SA113 was further analyzed by quantifying biofilm formation under static conditions and by observing biofilm formation under flow cell conditions (Fig. 3B and D). Both experiments confirmed the reduced capacity of the mutant to form biofilm. Inactivation of ccpA had no apparent effect on the primary attachment of the mutant to polystyrene surfaces. Both the wild type and mutant showed approximately 10% primary adherence (data not shown). Interestingly, the lack of ccpA in SA113 did suppress the clumping phenotype in the presence of glucose observed for the parental strain grown in glass tubes (Fig. 2). The
ccpA mutant also lost the ability of its parent to form black and crusty-appearing colonies on CRA plates (Fig. 3C) and formed smaller colonies on CRA. The reason for the latter phenomenon might be the slightly higher susceptibility of the mutant (MIC of 1 g/liter versus 2 g/liter for Congo red), which was in the range of the Congo red concentration in the agar (0.8 g/liter). The crustiness and black color on CRA have been associated with PIA production (29) and might therefore indicate that the
ccpA mutant of strain SA113 produced less PIA than the wild type. trans-Complementation of KS66 with pMST1 restored both the colony morphology on CRA plates and the clumping phenotype of SA113 cultures grown in glass tubes, indicating that CcpA was involved in the development of both phenotypes.
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FIG. 3. (A) Effect of the ccpA deletion on biofilm formation capacity of S. aureus strain SA113 in TSB supplemented with 1% glucose. wt, wild type. (B) Quantification (A530) of biofilm formation of SA113. Results represent the averages of at least three independent experiments. Error bars indicate the standard deviation of the mean. **, P < 0.01 for wild type and KS66 trans-complemented with plasmid pMST1 (compl.) versus ccpA. (C) Growth morphologies of strain SA113 on CRA plates. (D) Biofilm formation of strain SA113 under flow conditions.
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ccpA mutant KS66 after 2 h (early exponential growth phase) and 8 h (stationary phase) of growth. Monitoring the icaA transcription after 2 h of growth in TSB supplemented with 1% glucose revealed a clear difference between SA113 and KS66, with SA113 producing 0.113 ± 0.006 copy of icaA per copy of gyrB, while deletion of ccpA resulted in a sevenfold reduction in icaA transcription (0.015 ± 0.004 copy of icaA per copy of gyrB for KS66), as compared to the wild type (P < 0.01). trans-Complementation of KS66 with pMST1 strongly increased icaA transcription (0.47 ± 0.144 copy of icaA per copy of gyrB), while transformation of KS66 with the empty control plasmid pAW17 did not alter the icaA expression of the mutant (0.018 ± 0.002 copy of icaA per copy of gyrB) (Fig. 4 A). Surprisingly, after 8 h of growth, icaA transcript levels were found to be strongly reduced and no longer differed significantly between SA113 and KS66 (0.001 ± 0.0004 copy of icaA per copy of gyrB for SA113 and 0.004 ± 0.004 copy of icaA per copy of gyrB for KS66; P > 0.05). Analysis of the PIA production in SA113 and its
ccpA mutant KS66 identified significant amounts of PIA only in SA113 but not in KS66 (Fig. 4B). In line with our transcriptional data, PIA was only detectable during the early exponential growth phase (2 h), but not after 8 h of growth (data not shown). trans-Complementation of KS66 with pMST1 restored PIA production, while transformation of KS66 with pAW17 was found to have no effect, signaling that CcpA is indeed influencing ica transcription and PIA production in SA113.
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FIG. 4. (A) icaA transcription after 2 h of growth in TSB supplemented with 1% glucose. (B) Slot blot analysis of the PIA production after 2 h of growth in TSB supplemented with 1% glucose. PIA extracts were diluted as indicated. wt, wild-type strain SA113; ccpA, strain KS66; compl., strain KS66 complemented with pMST1; control, strain KS66 containing pAW17.
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ccpA mutant with pMST1 reduced citB and citZ transcription to levels seen in the wild type. We found a putative cre (catabolite-responsive element) site 27 bp upstream of the citZ open reading frame (TgTGAAAGCcATTTCATA; capital letters indicate nucleotides that correspond to the cre site consensus of B. subtilis [38]), suggesting that CcpA affects the transcription of citZ directly. The effect of CcpA on citB expression, on the other hand, appears to be indirect because such an element is missing in front of, or within, citB, similar to the situation found in B. subtilis (28).
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FIG. 5. Northern blot analysis of citB, citZ, and cidABC transcription after 2 h of growth in TSB supplemented with 1% glucose. A 16S rRNA gene probe was used for hybridization as a loading control. wt, wild-type strain SA113; ccpA, strain KS66; compl., strain KS66 complemented with pMST1; control, strain KS66 containing pAW17.
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ccpA mutant, suggesting that CcpA is not affecting the regulation of these genes (data not shown). The investigation of the effect of CcpA on atl transcriptional levels suggested a tendency toward higher atl expression in the wild type than in the mutant, though total amounts of transcripts varied widely between separate experiments (data not shown).
However, we found a clear effect of CcpA on cidABC transcription, with SA113 producing significant amounts of cidABC, while no transcript was observed in KS66 (Fig. 5), and trans-complementation of the
ccpA mutant with pMST1 led to the production of cidABC transcripts again. The acetic acid concentration at the time point of sampling for Northern blot analysis was 2 mM in the culture supernatant of both the wild type and mutant. Because the acetic acid concentration was lower than the concentration required for cidA induction (30 mM) according to reference 45, and the concentrations were identical in the wild type and mutant, we suggest that there may exist additional factors which can induce cidA transcription. As mutation of cidA has been associated with reduced autolysis (41), we analyzed the effect of the ccpA mutation on Triton X-induced autolysis. The wild type showed slightly faster autolysis, with 88% ± 9.0% of the cells lysed after 2 h, while the mutant showed only 66% ± 3.7% lysis at this time point. When trans-complementing the mutant with pMST1, lysis was partially restored to 72% ± 6.3% after 2 h.
Conclusion. The rapid adaptation to environmental and nutritional conditions is central to the success of S. aureus as pathogen. The utilization of glucose as the preferred carbon source is controlled in S. aureus by CcpA, the mediator of carbon catabolite repression, which was shown earlier to promote the expression of selected virulence factors, increase the expression of oxacillin resistance, and repress capsule synthesis (50). The role of CcpA as a mediator of biofilm formation in the presence of glucose adds a further important function to CcpA, contributing to staphylococcal virulence and persistence. The positive impact of CcpA on biofilm formation in S. aureus is partly in contrast to observations made in B. subtilis (7, 53), where CcpA, depending on the growth medium, was found to repress biofilm formation. However, biofilm formation in S. aureus differs widely from biofilm formation in B. subtilis (8), which in the latter bacterium is closely related to sporulation. The S. aureus biofilm was shown here to have a complex composition, including PIA, proteinaceous factors, and eDNA. CcpA had an impact on at least two of these components: through upregulation of the ica operon, which is involved in PIA synthesis; and through upregulation of cidA, coding for the holin CidA, postulated to be involved in the release of eDNA. Regulation of these genes, which are not accompanied by a cre site, may have occurred indirectly, as a consequence of the downregulation of the TCA cycle through repression of citB and citZ, with citZ being preceded by a typical cre consensus sequence recognized by CcpA. These findings confirm the reported role of downregulation of the TCA cycle in biofilm formation (28). The apparent correlation between oxacillin resistance and the capacity to form a biofilm, as observed in some methicillin-resistant S. epidermidis strains (10), exists also in S. aureus and may be linked over CcpA.
Inactivation of CcpA in S. aureus, incapacitating biofilm formation, reducing the expression of secreted virulence factors and lowering the expression of oxacillin resistance, makes it an important player in overall staphylococcal virulence and antibiotic resistance. These findings underline the important linkage of metabolism to the envelope composition, virulence, and resistance in S. aureus.
We thank R. Landmann (Basel, Switzerland) and F. Götz (Tübingen, Germany) for providing the ica mutant of strain SA113. We thank H. Hilbi (ETH, Zurich, Switzerland) for providing the flow cell machinery and especially T. Spirig for his assistance in performing the flow cell experiments.
Published ahead of print on 10 March 2008. ![]()
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