Files in this Data Supplement:

• Supplemental file 1 - Table S1.Antigen presentation---relevant polymorphisms associated with TB susceptibility.
  Equations: APC model equations, TCR internalization model equations, and cytokine production model equations.
  Table S2. Initial values in the APC model.
  Table S3. Parameters in the APC model.
  Table S4. Initial values in the T-cell model.
  Table S5. Parameters in the T-cell model.
  Table S6. PRCC values for all 16 parameters that were varied during sensitivity analysis.
  Parameters for figures and tables.
  Fig. S1. Experimentally quantified effects of MHC polymorphisms on peptide-binding affinities.
  PDF file, 130K.