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Infection and Immunity, August 2008, p. 3710-3716, Vol. 76, No. 8
0019-9567/08/$08.00+0 doi:10.1128/IAI.01748-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
-Defensins Human Neutrophil Proteins 1 to 3
Florian Wartha,1,2,
Robert Hurwitz,3
Staffan Normark,1,2
Arturo Zychlinsky,4 and
Birgitta Henriques-Normark1,2*
Department of Bacteriology, Swedish Institute for Infectious Disease Control, 171 82 Solna, Sweden,1 Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 171 77 Stockholm, Sweden,2 Biochemistry Core Facility, Max Planck Institute for Infection Biology, 10117 Berlin, Germany,3 Department of Cellular Microbiology, Max Planck Institute for Infection Biology, 10117 Berlin, Germany4
Received 31 December 2007/ Returned for modification 11 March 2008/ Accepted 1 May 2008
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-defensins by mass spectrometry as the proteins responsible for killing pneumococci. Analysis of sensitivity to the commercial
-defensins human neutrophil proteins 1 to 3 (HNP1-3) confirmed these findings. We analyzed the sensitivities of different pneumococcal strains to HNP1-3 and found that encapsulated strains are efficiently killed at physiological concentrations (7.5 µg/ml). Surprisingly, nonencapsulated, nonvirulent pneumococci were significantly less sensitive to
-defensins. The proposed mechanisms of
-defensin resistance in nonencapsulated pneumococci is surface charge modification, e.g., by introduction of positive charge by D-alanylation of surface-exposed lipoteichoic acids. These mechanisms are surmounted by the presence of the capsule, which we hypothesize is masking these charge modifications. Hence,
-defensins in the phagolysosome of neutrophils possibly contribute to intracellular killing after antibody-mediated opsonophagocytosis of encapsulated pneumococci. |
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Neutrophils are professional phagocytes that have cytoplasmic granules (azurophilic, specific, and small storage) that contain AMPs (see below) and enzymes (e.g., neutrophil elastase and cathepsin G). Upon encountering microbes, neutrophils are activated and kill bacteria by phagocytosis (22, 24). In this process, microbes are engulfed into a phagosome that fuses with granules where reactive oxygen species are produced and AMPs and enzymes are present. Neutrophils also degranulate, killing microbes extracellularly through the release of AMPs from granules that fuse with the cytoplasmic membrane. Finally, neutrophils can form neutrophil extracellular traps (NETs), extracellular structures consisting of DNA, histones, and granule proteins that capture and kill microbes by means of a high local concentration of AMPs and histones (3, 35).
Typically, AMPs are small (12- to 100-amino-acid), amphiphilic, and cationic proteins. Two major groups of mammalian AMPs are the cathelicidins and the defensins. Defensins are small (15- to 20-residue), cysteine-rich cationic peptides with a characteristic β-sheet-rich fold. They constitute 30 to 50% of the content of azurophilic granules and are active against a wide range of bacteria, fungi, and enveloped viruses. Due to their net positive charge and hydrophobicity, defensins as well as other AMPs are thought to exert their antimicrobial effects by permeabilizing the bacterial cytoplasmic membrane (15). There are three subfamilies of defensins described for mammals, namely,
, β, and
, which were classified based on their cysteine pairing and structure (9, 15). Human neutrophil proteins 1 to 4 (HNP1-4) are
-defensins, expressed exclusively by neutrophils.
Gram-positive pathogens can be resistant to phagocytosis, AMPs, and NETs, preventing efficient clearance by innate immune mechanisms. The pneumococcal polysaccharide capsule, of which there are more than 90 different types, makes pneumococci resistant to complement-mediated opsonophagocytosis (5). The capsule also hampers trapping by NETs (34). Since most AMPs are cationic, the introduction of positive charge via D-alanylation of surface-exposed lipoteichoic acids (LTAs) (13, 17, 18, 25) makes microbes resistant to AMPs. Indeed, we recently showed that D-alanylation in nonencapsulated pneumococci rendered them resistant to killing by antimicrobial components present in NETs (34). The combination of capsule, DNase expression, and D-alanylation of LTA makes pneumococci resistant to NETs (1, 34, 35).
Other surface proteins modifying pneumococcal surface charge and thereby potentially the susceptibility to positively charged AMPs include LytA and PgdA. The murein hydrolase LytA, a choline-binding protein bound to phosphocholine residues on LTA, is involved in autolysis and drug-induced lysis (32). Pneumococcal strains lacking choline-binding proteins, such as LytA, are more net-negatively charged than wild-type strains (30). PgdA removes negatively charged acetyl groups from the GlcNAc sugar moieties on cell wall peptidoglycan (33). The inactivation of pgdA is therefore expected to increase the net negative surface charge.
Since many pneumococcal infections are controlled by the innate immune system, we set out to identify individual AMPs from neutrophils that kill pneumococci. We fractionated human neutrophil granule extracts (hNGE) by high-performance liquid chromatography (HPLC) and tested the effect on different pneumococcal serotypes and mutants.
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Chromatography. hNGE was fractionated with a C4 reverse-phase HPLC column (Vydac protein C4 column; column length of 250 mm, with particle size of 5 µm). Proteins were eluted with a gradient of increasing concentrations of acetonitrile containing 0.1% (vol/vol) trifluoroacetic acid (TFA) at a flow rate of 1 ml/min. Fractions were lyophilized, dissolved in 20 mM sodium acetate buffer (pH 4.0), and tested for antimicrobial activity (see below). Separation was performed with a Waters 626 LC system connected to a photodiode array detector (Waters, Milford, MA).
Mass spectrometry. The identity and purity of the antimicrobial component were analyzed by matrix-assisted laser desorption ionization mass spectrometry (Proteomics 4700 workstation; Applied Biosystems, Foster City, CA). The lyophilized sample was digested with 50 mM NH4HCO3, 5% acetonitrile, 2% (wt/vol) trypsin (sequencing-grade modified trypsin [Promega, Madison, WI]), and 0.15 M dithiothreitol for 4 h at 37°C. The reaction was stopped with 0.2% TFA and the reaction mixture was further mixed with matrix alpha-cyano-4-hydroxycinnamic acid (CHCA) solubilized in 50% acetonitrile-0.3% TFA at a concentration of 5 mg/ml.
Analysis of peptide mass fingerprints was obtained with the following parameters: reflectron mode, 20-kV accelerating voltage, and a low mass gate of 800 Da. Tandem mass spectrometry spectra were obtained without collision gas. The parameters for database searches (MASCOT; Matrix Science) were as follows: 30-ppm peptide mass tolerance for peptide mass fingerprint and 0.3 Da for tandem mass spectrometry spectra. The uncleaved protein was analyzed in linear mode with CHCA as the matrix with an internal marker (Mr, 2465.21).
Bacterial strains used.
Pneumococci were grown on blood agar plates overnight at 37°C in 5% CO2. The bacteria were subcultured in semisynthetic medium c+y (19) to an optical density at 620 nm of 0.5 and diluted in Dulbecco's phosphate-buffered saline (PBS) without Ca2+ and Mg2+ (Invitrogen, Lidingö, Sweden). The following strains were used: the serotype 1 strain BHN32, the serotype 2 strain D39, the serotype 4 strain TIGR4 (31), and the serotype 9V strain I95 (8), as well as their nonencapsulated derivatives, type 1R (34), type 2R (R6) (14), type 4R (TIGR4R) (8), and type 9VR (8), respectively. The TIGR4
lytA mutant (with an erythromycin cassette replacing lytA) was obtained from E. Tuomanen (12). The TIGR4R
lytA mutant was created by transforming TIGR4R with genomic DNA from the TIGR4
lytA mutant and selecting for nonencapsulated mutants on erythromycin plates. We used PCR ligation mutagenesis (20, 29) to inactivate dltA (34) or pgdA in TIGR4 and TIGR4R. For pgdA, primers used for construction and screening of deletion alleles were 5'-taagactttctttcctgctg-3' and 5'-TTGGGCCCggtctgttagatatttgacag-3' flanked with ApaI for the upstream fragment and 5'-gactatccaacagagaggag-3' and 5'-TTGGATCCgcaatccacaattcctctag-3' flanked with BamHI for the downstream fragment (lowercase letters indicate the gene sequence, and underlining indicates the restriction enzyme site). The PCR products were ligated to an erythromycin cassette (GenBank; AB057644) containing ApaI and BamHI sites and transformed into the recipient pneumococcal strain as previously described (2). The resulting transformants were selected on blood agar plates containing erythromycin (1 µg/ml) and confirmed by PCR and sequencing of the insertion area.
Shigella flexneri (strain M90T) and Escherichia coli (Top10; Invitrogen, Lidingö, Sweden) were grown in tryptic soy broth and LB broth, respectively, overnight at 37°C and subcultured at a 1/100 dilution on the day of the experiment.
Killing assays. The bactericidal activities of hNGE, HPLC fractions, and HNP1-3 (Hycult Biotechnology b.v., Uden, The Netherlands), all of them in sodium acetate buffer (pH 4.0), were determined by incubating bacteria (1.0 x 106/ml) in Dulbecco's PBS (yielding a pH of 7.0) at 37°C with the indicated doses for 1 h. Survivors were counted by plating serial dilutions on blood agar plates. Bacterial killing was measured as percentages of control values (obtained using bacteria incubated with sodium acetate buffer and PBS alone). Low-binding, siliconized tubes and pipette tips (Biozym, Hessich Oldendorf, Germany) were used for handling HNP1-3, hNGE, and the individual HPLC fractions. Experiments were performed at least three independent times.
Defensin binding assay. Pneumococci were grown to mid-logarithmic phase and diluted to gain a 1.7 x 106/ml solution and incubated together with HNP1-3 (HyCult Biotechnology) at concentrations of 0.15, 1.5, and 15 µg/ml for 1 to 2 min. After centrifugation, the pellet was lysed using lysozyme (10 mg/ml) for 30 min at 37°C. An HNP1-3 enzyme-linked immunosorbent assay (ELISA) (HyCult Biotechnology) was performed with dilution series of the lysed bacteria as outlined in the manufacturer's protocol. Binding of defensins (femtograms per single bacterium) was calculated. Bacteria incubated with sodium acetate buffer were used as the control.
Statistical analyses.
The nonparametric Mann-Whitney U test was used for analysis. A P value of
0.05 was considered significant.
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FIG. 1. Killing of encapsulated pneumococci by a hNGE and its individual HPLC fractions. The antimicrobial activity in hNGE (white bar) was determined by incubating encapsulated TIGR4 pneumococci with a 1/10 dilution of hNGE in sodium acetate buffer and determining survivors by plating serial dilutions. The extract was fractionated on a C4 reverse-phase HPLC column into 40 fractions and incubated with pneumococci to determine killing of individual fractions (black bars). The mean percentage of killing plus standard error of the mean (SEM) for each fraction is shown. The elution profile at A280 from the HPLC is shown (black curves). Encapsulated TIGR4 pneumococci are killed by the hNGE and efficiently by fraction 20.
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-defensins HNP1 (gi:228797) and HNP3 (gi:229858). We also observed antimicrobial activity in fractions 10 to 16, but this was not further investigated.
The killing activity of fraction 20 on pneumococci was dose dependent (Fig. 2A). A 1/10 dilution of the 1.6-mg/ml protein-containing fraction killed 100% of the inoculum, while a 1/100 dilution resulted in more than 20% killing. We used commercial HNP1-3 to confirm that
-defensins kill encapsulated pneumococci (Fig. 2B). A concentration as low as 3.75 µg/ml killed 90% of the TIGR4 inoculum, and this activity was also dose dependent. The gram-negative bacteria Shigella flexneri and Escherichia coli were significantly less susceptible to HNP1-3 than were encapsulated pneumococci. Fifteen micrograms of HNP1-3 per milliliter killed only 25% of either of these two gram-negative organisms, a sensitivity similar to that seen for the nonencapsulated derivative TIGR4R strain (Fig. 2B). The nonencapsulated TIGR4R strain was less sensitive not only to HNP1-3 but also to hNGE (data not shown). We conclude that human HNP1-3 is the most effective component of hNGE against TIGR4 pneumococci, and the presence of the type 4 capsule confers this high sensitivity.
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FIG. 2. Killing of pneumococci and gram-negative bacteria by defensins. Bacterial killing was determined by incubating bacteria with increasing concentrations of fraction 20, which contains defensins (A), or with commercial HNP1-3 (B) and enumerating survivors. The mean values plus SEM are shown. (A) Killing of encapsulated TIGR4 by fraction 20 diluted 1/10 to 1/100 in sodium acetate buffer. Sodium acetate buffer only was used as a control. (B) Killing of encapsulated TIGR4 and nonencapsulated TIGR4R pneumococci, Shigella flexneri, and Escherichia coli by HNP1-3. Effective concentrations ranged from 0 to 15.0 µg/ml of HNP1-3. Encapsulated pneumococci are more sensitive to HNP1-3 than are nonencapsulated pneumococci or gram-negative bacteria.
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FIG. 3. Dose-dependent killing of different pneumococci by HNP1-3. Bacterial killing was determined by incubating bacteria with 3.75 µg/ml (left) and 7.5 µg/ml (right) of HNP1-3. The mean values plus SEM are shown. (A) Encapsulated strains (black bars) are more sensitive than the corresponding nonencapsulated strains (white bars) to HNP1-3. (B) The absence of LTA D-alanylation ( dltA) or of the LytA amidase ( lytA) sensitizes nonencapsulated pneumococci (white bars) but not encapsulated pneumococci (black bars) to HNP1-3. The absence of peptidoglycan deacetylation ( pgdA) has a less pronounced effect on determining -defensin sensitivity in nonencapsulated pneumococci. **, P 0.01; ***, P 0.001.
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dltA mutant did not increase sensitivity to HNP1-3. However, upon inactivating dltA in the nonencapsulated TIGR4R background (the TIGR4R
dltA mutant), we observed a marked increase in sensitivity to HNP1-3, yielding a result similar to that for the R6 strain. Hence, modification in surface charge by abolishing the introduction of positively charged D-alanine to LTAs sensitizes nonencapsulated strains (R6, the TIGR4R
dltA mutant) to the positively charged HNP1-3.
We also used lytA and pgdA mutants to determine their effect on defensin-mediated killing (Fig. 3B). The presence or absence of LytA and PgdA had no effect on the killing of encapsulated TIGR4. However, the nonencapsulated TIGR4R
lytA mutant was more sensitive than the parental strain, TIGR4R. Also, the TIGR4R
pgdA mutant was killed more efficiently than the wild-type strain but not in a fashion as pronounced as that for the TIGR4R
dltA and TIGR4R
lytA mutants.
Taken together, these data suggest that the introduction of positive surface charge (via D-alanylation) or the reduction of negative surface charge (proteins decreasing exposure of choline residues or removal of acetyl groups) leads to resistance to HNP1-3. However, this mechanism is inactivated in the presence of the capsule.
We did not find a correlation between negatively charged capsules (types 1, 2, 4, and 9V) and noncharged capsules (types 7F and 14) and susceptibility to HNP1-3 (Fig. 4). Hence, the exact mechanism by which the capsule interferes with protective surface charge modifications remains to be elucidated.
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FIG. 4. Dose-dependent HNP1-3-mediated killing of pneumococci with different capsular charges. Bacterial killing was determined by incubating bacteria with 3.75 µg/ml (A) and 7.5 µg/ml (B) of HNP1-3. The mean values plus SEM are shown. There was no correlation between negatively charged capsules (types 1, 2, 4, and 9V; black) or noncharged capsules (types 7F and 14; white) and susceptibility to HNP1-3.
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FIG. 5. Binding of HNP1-3 to different pneumococcal strains. Binding was determined using an ELISA, as outlined in Materials and Methods. Binding was calculated as femtograms of HNP1-3 per single bacterium. One representative experiment is shown. (A) Binding of HNP1-3 (1.5 µg/ml) to TIGR4 pneumococci and isogenic capsular and dltA mutants. No significant difference between the strains in the binding of defensins was detected. (B) Dose-dependent binding of HNP1-3 (0.15, 1.5, and 15 µg/ml) to TIGR4 pneumococci.
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-defensins than are nonencapsulated strains in vitro. This difference in killing is not due to differences in binding of defensins to the bacteria. According to the widely accepted model, positively charged host AMPs bind to and insert into the microbial cell membrane, thereby killing the microbe (27). An increased net positive surface charge (mediated, for example, by D-alanylation of LTAs) repels cationic peptides. This model is supported by our data showing that nonencapsulated strains become sensitive to cationic
-defensins when net negative surface charge is increased by genetic inactivation of dltA. The sensitizing effect of the capsule brings in a novel aspect to this well-accepted model by putative mechanisms discussed below.
Apart from the removal of D-alanylation, the removal of the amidase LytA, a choline-binding protein, also sensitized nonencapsulated pneumococci against
-defensins. A less pronounced effect of protection against HNP1-3 could be observed for PgdA, a peptidoglycan deacetylase that confers protection from lysozyme by removing acetyl groups from N-acetylglucosamine (33). The resistance mechanism toward lysozyme was described to be due to altered substrate specificity. Here we found that this deacetylation, potentially via charge modification, also affects sensitivity toward charged AMPs but not to the same extent as D-alanylation.
The question remains as to why the above-mentioned mechanisms manifest only in the absence of the polysaccharide capsule. We found no reports addressing potential differences in D-alanylation, peptidoglycan deacetylation, or levels of choline binding proteins in encapsulated versus nonencapsulated strains that might explain why nonencapsulated strains are less sensitive to human defensins. Nevertheless, Swiatlo et al. showed that the removal of choline-binding proteins in a nonencapsulated background results in a significant alteration in the hydrophobic character of the pneumococcal cell surface (30). These findings do not exclude the possibility that the overall level of choline-binding proteins or other surface molecules is changed upon the inactivation of capsular expression.
Another explanation for the observed capsule-mediated effect might be a direct binding of AMPs to polysaccharides. Campos and coworkers described a mechanism of resistance to AMPs dependent on the Klebsiella pneumoniae capsule polysaccharide (4). Thus, a capsule polysaccharide mutant was shown to be more sensitive than the wild-type strain to human neutrophil defensin 1, β-defensin 1, lactoferrin, protamine sulfate, and polymyxin B. A higher susceptibility of encapsulated strains to defensins was also observed for Neisseria meningitidis (28). Possibly, the direct binding of AMPs to the polysaccharide moiety might lead to a higher local concentration, effectively killing encapsulated bacteria.
A third possibility is that the capsule masks the charge effects of D-alanylation, peptidoglycan deacetylation, and choline binding and thereby abrogates the protective effect of increased positive or decreased negative surface charge.
Thus, paradoxically, the pneumococcal capsule provides resistance against neutrophil phagocytosis and prevents capture in NETs (1, 34) but increases susceptibility to killing by
-defensins, which are abundant in neutrophil granules and the phagolysosome (16). We demonstrated previously that neither encapsulated nor nonencapsulated pneumococci are killed in AMP-rich NETs upon capture (1, 34) despite the presence of
-defensins (C. Urban and A. Zychlinsky, unpublished observations). It has previously been demonstrated, however, that
-defensins released from neutrophils are rapidly inactivated by serum proteins and by the ion concentration in the extracellular environment (9). The physiological concentration of
-defensins HNP1-3 within the neutrophil phagolysosome can be in the mg/ml range (7, 11), but extracellular concentrations due to degranulation are significantly lower (
6 µg/ml) (10). The inactivating effect of salts and serum in vivo clearly reduces activity; however, the extent to which this occurs cannot be determined, and hence the in vitro concentrations (up to 15 µg/ml) used here need to be treated with caution when extrapolating into the in vivo setting. Our data, however, are consistent with the literature: in vitro individual defensins from humans kill bacteria, fungi, and enveloped viruses at peptide concentrations in the 1- to 50-µg/ml range and gram-positive bacteria at concentrations as low as 1 µg/ml (for a review, see reference 26).
We conclude that
-defensins are active against pneumococci in general; however, the capsule increases susceptibility toward
-defensins and interferes with the protective effect accomplished by D-alanylation. How this increased killing of encapsulated pneumococci translates into human infections remains to be elucidated.
This research project was supported by two Marie Curie Early Stage Research Training Fellowships of the European Union's Sixth Framework Programme (called IMO-train and EIMID-EST), the Torsten and Ragnar Söderberg Foundation, the Swedish Royal Academy of Sciences, and the Swedish Research Council.
Published ahead of print on 12 May 2008. ![]()
These authors contributed equally to this work. ![]()
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