Files in this Data Supplement:

• Supplemental file 2 - Fig. S1. Chromosome circles of C. burnetii isolates.
  PDF file, 1.2MB.
• Supplemental file 1 - Table S1. Novel chromosomal regions/ORFs of K, G, and Dugway relative to those of NM.
  Table S2. Nucleotide polymorphisms of K QpRS relative to those of Priscilla (Q177) QpRS and G integrated plasmid-like sequences relative to S (Q217) integrated plasmid-like sequences.
  Table S3. Novel plasmid regions of QpRS and QpDG relative to those of QpH1.
  Table S4. Newly annotated NM chromosomal and plasmid ORFs.
  Table S5. Four-way ORF comparison of NM, K, G, and Dugway isolates.
  Table S6. Intact K, G, and/or Dugway chromosomal ORFs (with functional annotation) that are missing in NM.
  Table S7. Intact ORFs encoded by C. burnetii plasmids and integrated plasmid-like sequences.
  Table S8. Insertion sequences of C. burnetii isolates.
  Table S9. K, G, and Dugway chromosomal syntenic blocks and flanking IS element transposases.
  Table S10. Pseudogenes present in C. burnetii isolates.
  Table S11. Association of C. burnetii pseudogenes with chromosomal breakpoints and transposases.
  Table S12. Overall SNP contents of K, G, and Dugway relative to that of NM.
  Table S13. Conserved full-length ORFs containing the highest number of nonsynonymous SNPs relative to the NM ortholog.
  Zipped MS Excel file, 255K.