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Infection and Immunity, March 2009, p. 935-942, Vol. 77, No. 3
0019-9567/09/$08.00+0 doi:10.1128/IAI.00929-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Pramod Kumar Rompikuntal,1,
Takahiko Ishikawa,1
Karolis Vaitkevicius,1
Åsa Sjöling,2
Nadia Dolganov,3
Jun Zhu,4
Gary Schoolnik,3 and
Sun Nyunt Wai1*
Department of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden,1 Department of Microbiology and Immunology, Institute of Biomedicine, University of Gothenburg, Box 435, 405 30, Sweden,2 Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California,3 Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 191044
Received 25 July 2008/ Returned for modification 31 August 2008/ Accepted 8 December 2008
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Melanization has been considered to be important in microbial pathogenesis because it has been associated with virulence in many microorganisms (7, 24). Melanin appears to contribute to virulence by reducing the susceptibility of melanized microbes to host defense mechanisms. Although melanin pigments are not considered essential for the growth of microorganisms, they can increase the survival of microorganisms by protecting DNA and other molecules from UV light, enhance virulence, inhibit biofilm degradation, protect enzymes from proteases, and protect microorganisms from hydrolytic enzymes, and they may even act as proton and nutrient sinks in biofilm (34, 36). Melanization, and its consequences for mammalian virulence, has been most extensively studied in Cryptococcus neoformans (24). The pathway of tyrosine metabolism, which could lead to pigment formation, involves two branches: melanin formation via the hydroxyphenylalanine intermediate, which requires tyrosinase activity, and tyrosine catabolism involving homogentisic acid (HGA) formation and its further conversion to maleylacetoacetic acid (2). HGA is the main p-diphenolic intermediate of the normal L-tyrosine catabolism pathway in animals and bacteria. HGA is known to auto-oxidize, leading to the formation of reddish-brown pigment called pyomelanin, HG-melanin, or ochronotic pigment. In vitro studies have shown that HGA auto-oxidation is catalyzed by Mn2+ and involves H2O2 formation during the reaction (2, 16, 20). Several bacterial species are able to produce pigment via the HGA intermediate, including Shewanella colwelliana, Hyphomonas species, and Legionella pneumophila (14, 28).
Most of the V. cholerae strains do not form any detectable pigment under the experimental growth conditions normally used, but some pigmented mutants were detected after N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis (4, 7). The mutated gene(s) in such mutants remains unverified. It has been shown that pigment production in V. cholerae can be induced in response to stress, particularly hyperosmotic shock and elevated temperatures (1, 3, 5, 22). The pigment formation is initiated in late-exponential to postexponential growth of the bacteria (1, 5). V. cholerae is a member of a relatively large group of environmental bacteria that produce melanins, including species of Aeromonas, Burkholderia, Caulobacter, Mycobacterium, Proteus, Pseudomonas, Serratia, and Legionella (3). Melanins are also broadly distributed among eukaryotic microorganisms, including fungi and protozoa (24, 25).
The HGA branch is believed to be the only catabolic pigment-producing branch present in V. cholerae (14, 26), although the existence of other types of pigments cannot yet be excluded. However, to date, there is little information on the genes involved in V. cholerae melanization. We have identified the transposon targeted gene in a pigment-overproducing V. cholerae mutant as a putative oxidoreductase.
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and S17-1
pir were used for standard DNA manipulations and as donors in mating in transposon mutagenesis, respectively. Growth media. LB medium, LB agar plates, and several defined media were used for preliminary studies of growth and pigment production of the mutant and the WT strains of V. cholerae.
Mutagenesis.
Tn5 mutagenesis of V. cholerae O1 El Tor, strain A1552, was performed by conjugation between the donor, E. coli S17-1
pir containing a plasmid carrying the mini-Tn5 transposon TnKm2, and the recipient, a rifampin-resistant V. cholerae O1 El Tor A1552. Conjugation was performed by mixing equal volumes of the donor and recipient, followed by filtration through a 0.45-µm-pore-size filter (Nalgene). The filters were then placed on LB agar plates, incubated for 6 h at 37°C, and suspended in LB, and the bacteria were recovered by vortexing. The exconjugants were selected by plating the suspension onto LB plates supplemented with 100 µg/ml of rifampin and 50 µg/ml of kanamycin. A total of 30,000 exconjugants were screened on plates to identify mutants exhibiting a pigment production phenotype.
In-frame deletion mutant construction of the rpoS gene of V. cholerae. Mutagenesis of the V. cholerae strain A1552 in the rpoS locus was performed by making an in-frame deletion that removed most of the codons, using a procedure described previously (27, 32, 38).
Briefly, a 500-bp 5' flanking sequence of the gene, including several nucleotides of the coding region, was PCR amplified with the primers rpoS-A (5'-CGCTCTAGACTAAACCTTCGGATGAGAAGA-3') and rpoS-B (5'-CCCATCCACTATAAACTAACACTCTTCTACTTTGGTTACGGT-3'). The primers rpoS-C (5'-TGTTAGTTTATAGTGGATGGGGCGCTGTTTAACGTCGAATAC-3') and rpoS-D (5'-CGCTCTAGACAAAGAGATTGGTGCCATGAC-3') were used to amplify several nucleotides of the 3' region of the gene plus 500 bp of the downstream flanking sequence. The two PCR products were annealed at their overlapping region and amplified by PCR to produce a single DNA fragment, using the outer primers (rpoS-A and rpoS-D). The resulting PCR product, lacking most of the coding sequence of the gene, was digested with XbaI enzyme and ligated into a similarly digested pCVD442 suicide plasmid. pCVD442::
rpoS was introduced into E. coli SM10
pir by electroporation. The donor, E. coli S10
pir containing the plasmid pCVD442::
rpoS, was used for conjugal transfer to rifampin-resistant V. cholerae O1 El Tor A1552. A mixture containing equal volumes of the donor and recipient in LB was incubated for 6 h at 30°C. The exconjugants were selected by plating the suspension onto LB plates supplemented with 100 µg/ml of rifampin and 100 µg/ml of carbenicillin (Cb) at 30°C. After selection of the desired transconjugants on rifampin-plus-Cb plates, they were streaked on LB plates with 10% sucrose at 30°C. Several colonies were purified from the plates, tested for Cb sensitivity, and then analyzed for the deletion using colony PCR. The primers VC1348-A (5'-CGCTCTAGACGAGTTTCATCGCCTCAATCC-3'), VC1348-B (5'-CCCATCCACTATAAACTAACAGCAATGGTACCGATTCAACTG-3'), VC1348-C (5'-TGTTAGTTTATAGTGGATGGGGGCGGTTGCCATGTTTAAAGT-3'), and VC1348-D (5'-CGCTCTAGACCAATTGCAGCCATGATTTTG-3') were used for the construction of a
VC1348 mutant. The primers VC1349-A (5'-CGCTCTAGACGCAGCACTTCGGTTTCCAGA-3'), VC1349-B (5'-CCCATCCACTATAAACTAACACGCCATCAAGCAAAACAGTAG-3'), VC1349-C (5'-TGTTAGTTTATAGTGGATGGGGGTGAGCGTTTAAACCAGTAG-3'), and VC1349-D (5'-CGCTCTAGACGAAAGAGTGAACATGCGCAT-3') were used for the construction of a
VC1349 mutant. The procedure for the mutant construction was the same as described above for the
rpoS mutant construction. The
rpoS hmgA::km double mutant was obtained by phage-mediated transduction using the CP-T1ts phage (8). The CP-T1ts stock was obtained from Andrew Camilli. Bacteriophage CP-T1ts propagated on strain SNW29 was prepared by a plate method. V. cholerae cells were grown to late exponential phase (an optical density at 600 nm [OD600] of
0.7) and infected at a multiplicity of infection of 10–5 with CP-T1ts. Bacteriophage was allowed to adsorb for 10 min at room temperature and was then mixed with 5 ml of 45°C LB soft agar (0.5%) and poured onto LB agar plates. The plates were incubated at 30°C. Bacteriophage was recovered from the soft agar layer of the plates by resuspending the top agar in 5 ml of LB broth and was incubated at 4°C to allow bacteriophage diffusion. Agar and bacteria were removed by two successive centrifugations at 15,000 x g for 1 min. Bacteriophage was concentrated by centrifugation at 16,000 x g for 2 h at 4°C. The pellet containing the bacteriophage was suspended in 500 µl of LB broth and used for transduction. Phage transduction was done as follows. The recipient strain (SNW30) was grown in 10 ml LB to late exponential phase (OD600,
0.7), spun down, and resuspended in 1 ml LB broth; 0.5 ml of the bacterial suspension, 0.5 ml of phage suspension, and 0.5 ml of adsorption buffer (0.015 M CaCl2+, 0.03 M MgCl2) were mixed and incubated at 30°C for 20 min. The cells were washed once in 0.9% NaCl, spun down, and resuspended in 0.3 ml of NaCl, and 0.1-ml samples of the suspension were spread out on plates containing 30 µg/ml kanamycin (Sigma). Transductant colonies were purified and used for further experiments.
Cloning and analysis of the transposon insertion site.
Chromosomal DNA was isolated from the V. cholerae transposon insertion mutants using the Marmur procedures (19). After digestion of chromosomal DNA with EcoRI restriction enzyme (Fermentas Life Science) according to the manufacturers' instructions, the DNA fragments were separated on a 0.7% agarose (Sigma) gel by electrophoresis at a voltage of 5 V/cm. The DNA fragments between 3 and 8 kb in size were extracted from the agarose gel using a MiniElute Gel Extraction kit according to the manufacturers' instructions (Qiagen) and subsequently ligated using ligase enzyme (Takara Bio Inc.) into the cloning vector pUC18 that had been digested with the EcoRI enzyme. The pool of plasmids was introduced by transformation into E. coli strain DH5
by electroporation, followed by the selection of resistant transformants on plates containing 30 µg/ml kanamycin (Sigma)- and 100 µg/ml Cb (Sigma)-resistant transformants.
PCR primers and complementation. The PCR primers used for obtaining a plasmid clone with a WT locus allowing complementation tests of the pigment-overproducing mutant were 5'-ATCAACGAGTCCTCTGACGATAA-3' and 5'-CATGGTTAACGTAAGCGGAACCA-3'. The DNA fragment containing the oxidoreductase gene was obtained after amplification by PCR using WT V. cholerae chromosomal DNA as a template. The PCR product was purified from an agarose gel and ligated into the pCR2.1 vector plasmid (Invitrogen). After amplification in the TOP10F' E. coli strain, the plasmid was isolated with a Qiaprep Spin Miniprep kit (Qiagen). The hmgA+ plasmid clone (pSNW501) was electroporated into WT and SNW29 mutant V. cholerae (see Results). As a negative control, the vector pCR2.1 without an insert was similarly introduced into the WT and mutant strains. Furthermore, the homogentisate 1,2-dioxygenase was cloned into another vector, pUC18 (36), background at an EcoRI restriction site, resulting in plasmid pSNW502 (denoted phmgA). In both pSNW501 and pSNW502, expression depended on the lac promoter in the vector.
RNA extraction and qRT-PCR. RNA was prepared using Trizol according to the manufacturer's instructions (Invitrogen), and the concentration was measured using a NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies). cDNA was prepared from 200 ng RNA from each sample using the QuantiTect cDNA kit (Qiagen), which includes a DNase treatment step. Real-time reverse transcription (RT)-PCR was performed using the primers specific for VC1344 (VC1344-F, 5'-CCAAGGAAACGATGATGATGG-3', and VC1344-R, 5'-GAACGGTGTTTAGCAATTTCG-3') and VC1345 (VC1345-F, 5'-CATCGTGAAGGCACTTGTTC-3', and VC1345-R, 5'-GCAGTTCGCCTTCCCACTC-3'). Quantitative RT-PCR (qRT-PCR) experiments were done using Power SYBR Green qPCR MasterMix (Applied Biosystems). Each reaction mixture contained 300 nM primers, 100 ng template, and reference dye. Three independent samples were tested in triplicate. For each sample, the mean cycle threshold of the test transcript was normalized to that of tmRNA.
UV sensitivity test. Bacterial strains were grown in LB medium with aeration by shaking at 37°C for 24 h. The bacterial suspensions were transferred into a petri dish and irradiated with UV doses of 0, 100, 200, and 300 µJ/m2. All experiments were repeated three to five times, and an average was calculated from the analyses of surviving bacterial cells after serial dilutions of bacterial suspensions were plated on LB agar incubated in the dark at 37°C overnight.
SDS-PAGE and Western blotting. For TcpA and CTX detection, V. cholerae strains were grown as described previously (12). Bacteria were harvested by centrifugation at 10,000 x g for 10 min at 4°C. The resulting pellet was resuspended in 0.20 volume of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer containing 2-mercaptoethanol and used for the detection of TcpA. The culture supernatant fluid was precipitated with 10% trichloroacetic acid (TCA). Briefly, 1 volume (250 µl) of 50% TCA stock was added to 4 volumes (1 ml) of protein sample. The protein-TCA mixture was kept on ice for 15 min, and subsequently, the tube was centrifuged at 15,000 x g for 5 min. The supernatant was removed, the protein pellet was washed with 200 µl of cold acetone, and the tube was centrifuged at 15,000 x g for 5 min. A total of two acetone washes were done. The protein pellet was dried by placing the tube in a 95°C heat block for 5 to 10 min to drive off the acetone. The resulting pellets were dissolved in sample buffer containing 10% glycerol, 0.05% bromophenol blue, 2% SDS, 5% 2-mercaptoethanol, and 10 mM Tris-HCl, pH 6.8, and resolved by 12.5% SDS-PAGE with a discontinuous buffer system at a constant voltage of 60 V for the stacking gel and 120 V for the resolving gel (17). Proteins with known molecular masses (Fermentas) were used as molecular mass markers. The gels were fixed with methanol and glacial acetic acid. The proteins were visualized by Coomassie blue staining. Western blot analyses were performed as described previously (31), and detection was done by using the ECL+ chemiluminescence system (GE Healthcare). Anti-TcpA polyclonal antiserum (a gift from R. Taylor [13]) and anti-CTX A and B subunit antiserum (Sigma) were used for detection of TcpA in whole-cell extracts and CTX in culture supernatants, respectively. The anti-CRP polyclonal antiserum against E. coli cyclic AMP receptor protein (CRP) (15, 35) was used for the internal control of cytoplasmic protein when the TcpA immunoblot analysis was performed. The enhanced-chemiluminescence immunodetection method was applied to detect the reaction bands according to the manufacturer's (GE Healthcare) instructions.
TcpA stability assay. To determine the intracellular and surface-bound TcpA stability, we used a technique described previously (13). The protein stability was monitored after protein synthesis had been inhibited by the addition of 25 µg/ml chloramphenicol to bacterial cultures grown to 40 Klett units in LB medium at 37°C. Samples to be analyzed by Western blotting were removed at the indicated time points: 0, 5, 10, 15, 30, 45, and 60 min after the addition of chloramphenicol.
Measurement of pigment production. Bacterial strains were grown in LB medium at 37°C with shaking conditions overnight. One hundred microliters of overnight bacterial culture was inoculated into 20 ml LB medium in the presence or absence of 5 mM L-tyrosine (Sigma). Cultures were grown at 37°C under shaking conditions overnight. The culture supernatants were removed by centrifugation at 15,000 x g for 10 min and filtered through a 0.2-µm Millipore filter (Millipore AB). The pigmentation of the culture supernatants was measured by the OD400. The data represent the results of three independently performed experiments.
Genome database searches. Genome database accession number searches were done for the complete whole-genome sequence of V. cholerae O1 biovar El Tor strain N16961 chromosomes I and II at the NCBI website (http://www.ncbi.nlm.nih.gov).
Infant mouse competition assay. Approximately 105 WT A1552 and SNW29 cells were inoculated intragastrically into 6-day-old CD-1 mice (Charles River Laboratories). The mice were euthanized after 20 h, and the bacteria colonizing the intestines were quantified as described previously (6).
Microarray experiments.
Bacteria were cultured statically for 4 h in AKI medium (12) at 37°C and then shifted to aerobic growth for 6 h using shaken culture flasks (12). Triplicate samples were taken every hour for the duration of the experiment (10 h). Bacteria were collected on a 0.2-µm bacterial filter (diameter, 47 mm) by quick vacuum filtration (2 to 5 s) followed by immediate lysis with Trizol reagent (Invitrogen), frozen on dry ice, and stored at –80°C until RNA isolation was performed. RNA was isolated, treated with DNase I, and cleaned with an RNeasy kit (Qiagen). Labeling of cDNA and microarray hybridizations were performed as described previously (13). RNA from bacteria exponentially grown in LB (OD600,
0.3) was used as a reference. Microarray data analysis was done as described previously (8).
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FIG. 1. (A) Pigment production after bacterial growth in LB liquid medium at 37°C with shaking. (B) Genetic map of the mini-Tn5-Km2 cassette insertion in the brown-pigment-overproducing V. cholerae mutant at chromosome position VC1345 (accession number, AE003852.1; GeneID, 2614799) (arrow). (C) Complementation analysis of the brown-pigment-producing mutant.
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To verify that the pigment production really was caused by the insertion mutation in the VC1345 open reading frame, we cloned the WT hmgA allele under the control of a vector plasmid promoter and carried out a trans-complementation test. We used PCR primers and amplified a fragment carrying the WT locus as described in Materials and Methods. As shown in Fig. 1C, the hmgA+ clone complemented the mutation, and in its presence, the pigment production was lost.
HGA is the main p-diphenolic intermediate of the normal L-tyrosine catabolic pathway in animals and bacteria. HGA is known to auto-oxidize, leading to formation of reddish-brown pigment called pyomelanin, HG-melanin, or ochronotic pigment. The putative involvement of the V. cholerae hmgA gene product in a catabolic scheme is illustrated in Fig. 2.
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FIG. 2. Catabolic pathway of tyrosine metabolism and representative genetic loci. Predicted enzymes encoded by the respective genetic loci in V. cholerae are as follows: VC1344, 4-hydroxyphenylpyruvate dioxygenase; VC1345, homogentisate 1,2-dioxygenase; VC1347, maleylacetoacetate isomerase; VC1346, fumarylacetoacetase. The proposed pathway is based in part on the pathway described for Streptomyces avermitilis (5).
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FIG. 3. UV sensitivity test of V. cholerae A1552 (WT) and SNW29. Bacterial growth, UV irradiation, and plating to determine bacterial survival were performed as described in Materials and Methods.
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FIG. 4. Expression of the VC1344-VC1349 gene cluster during 10 h of bacterial growth under AKI conditions. Gene expression of WT A1552 was analyzed using RNA from exponentially grown bacteria in LB culture as a reference. The expression ratios are represented by shades of color according to the log2 (induction) scale shown.
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FIG. 5. Analyses of VC1344 and VC1345 (hmgA) gene expression by qRT-PCR as described in Materials and Methods. The data represent the results of three independently performed experiments. The error bars indicate the standard deviations from three experiments.
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We compared the levels of transcription of the VC1344 and hmgA genes in WT V. cholerae strain A1552 and in SNW30 by qRT-PCR. We found that the expression of both the hmgA and VC1344 genes was
8-fold reduced in the
rpoS mutant of V. cholerae strain A1552 (Fig. 5). We also tested the levels of pigment production in WT V. cholerae, the hmgA mutant (SNW29), the rpoS mutant (SNW30), and the hmgA rpoS double mutant (SNW31) in the absence or presence of exogenously added tyrosine in the culture medium. As shown in Fig. 6, a slight increase in the production of pigment was observed in the hmgA rpoS double mutant (SNW31) grown in the presence of tyrosine compared with the hmgA single mutant (SNW29). However, there were no differences observed in pigment production between the WT and the rpoS single mutant (SNW30) strain when grown either in the absence or in the presence of tyrosine.
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FIG. 6. Levels of pigment production in the WT V. cholerae strain A1552, the rpoS mutant (SNW30), the hgmA mutant (SNW29), and the hgmA rpoS mutant (SNW31) with and without tyrosine supplement in growth medium. The error bars show the standard variations of three experiments.
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FIG. 7. (A) Immunoblot analyses of CTX levels in V. cholerae WT A1552 (lane 1) and SNW29, a hyperpigmented strain (lane 2), with anti-CTX polyclonal antiserum. (B) TcpA production in A1552 (WT) and SNW29 (hyperpigmented) strains. The samples in lane 1 (A1552) and lane 2 (SNW29) were from bacteria grown in yeast extract-peptone (YEP) medium at 37°C under static culture conditions. The samples in lane 3 (A1552) and lane 4 (SNW29) were from bacteria grown in YEP medium at 37°C with shaking. The CRP protein was detected as an internal control for cytoplasmic protein. The arrows show the positions of the TcpA and CRP proteins. A total of 3 µg of protein was loaded in each lane.
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FIG. 8. Comparison of TcpA protein stabilitiesy in WT strain A1552 and the mutant SNW29. (A) Immunoblot analysis using anti-TcpA polyclonal antiserum. Lanes 1 to 7, A1552; lanes 8 to 14, SNW29. The times after addition of chloramphenicol were as follows: lanes 1 and 8, 0 min; lanes 2 and 9, 5 min; lanes 3 and 10, 10 min; lanes 4 and 11, 15 min; lanes 5 and 12, 30 min; lanes 6 and 13, 45 min; lanes 7 and 14, 60 min. (B) Quantitative analysis of TcpA levels using the Quantity One program (Bio-Rad). (C) Effect of H2O2 on TcpA expression in V. cholerae strain A1552. Shown is immunoblot analysis using anti-TcpA antiserum. The bacteria were grown in the presence of different concentrations of H2O2.
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FIG. 9. Infant mouse colonization assay using strains A1552 (wt) and SNW29 (hgmA::Km) as described in Materials and Methods.
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This work was supported by grants from the Swedish Research Council, the Swedish Foundation for International Cooperation in Research and Higher Education (STINT), and the Faculty of Medicine at Umeå University, and it was performed within the Umeå Centre for Microbial Research (UCMR). The work was carried out in the frame of the European Virtual Institute for Functional Genomics of Bacterial Pathogens (CEE LSHB-CT-2005-512061) and with affiliation to the ERA-NET PathoGenoMics program.
Published ahead of print on 22 December 2008. ![]()
S.P.V. and P.K.R. contributed equally to the work. ![]()
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