TABLE 2

Differentially expressed genes corresponding to differentially abundant proteins detected by proteomic methods

Gene no. in B8 genomeGene no. in 26695/J99 genomeGene name or functionDifferential expression detected by:
2D-DIGEa,cMudPIT 26695b,cMudPIT 7.13b,ciTRAQ 26695b,ciTRAQ 7.13b,cBiotinylation 26695b,c
HPB8_106HP1435pspAYes
HPB8_162dHP1317rplWYes
HPB8_188dHP1426PredictedYes
HPB8_195HP1286Secreted proteinYes
HPB8_234HP1246rpsFYes
HPB8_235HP1245ssbYes
HPB8_394HP1100porAYes
HPB8_439HP0389sodBYes
HPB8_475HP1412PredictedYesYes
HPB8_555jhp1408PredictedYes
HPB8_761HP0565PredictedYesYes
HPB8_800HP0601flaAYesYes
HPB8_829HP0630mda66YesYesYes
HPB8_844HP0642frxAYesYesYes
HPB8_897HP0696acxBYes
HPB8_938HP0731PredictedYes
HPB8_958HP0751flaGYesYes
HPB8_1010HP0802ribAYes
HPB8_1017HP0809fliLYes
HPB8_1247HP0318PredictedYes
HPB8_1271HP0291pheAYes
HPB8_1336HP0229hopAYesYes
HPB8_1430HP0135PredictedYes
HPB8_1450HP0115flaBYes
HPB8_1493HP0072ureBYes
HPB8_1600HP0025hopDYesYes
HPB8_1701HP1399rocFYes
HPB8_1702HP1400fecA3YesYesYesYesYes
HPB8_p0002jhp0828PredictedYes
  • a Loh et al., 2012 (16).

  • b Voss et al., 2015 (19).

  • c “Yes” indicates that differential expression was detected at the protein level in the indicated study.

  • d In two cases, the direction of change in response to high-salt conditions (i.e., upregulation or downregulation) was nonconcordant when RNA-seq results were compared with proteomic results.