TABLE 2

Log2 fold changes (± SD) in gene expression in strains 14028, Ty2, and 129-0238 determined by RNA-Seq and RT-qPCR

GeneRNA-SeqRT-qPCR
14028Ty2129-023814028Ty2129-0238
hilD−4.081.233.15−3.48 ± 0.711.42 ± 0.252.44 ± 0.73
hilA−6.981.543.67−6.51 ± 0.641.71 ± 0.393.37 ± 0.39
prgH−6.361.574.02−6.00 ± 0.741.68 ± 0.734.00 ± 0.48
sopB−6.951.114.21−3.85 ± 0.441.38 ± 0.594.13 ± 0.27
flhD−1.721.051.33−1.25 ± 0.431.93 ± 0.382.31 ± 1.13
flgA−1.291.371.70−0.98 ± 0.271.99 ± 0.441.37 ± 0.84
fadE7.444.704.183.55 ± 2.133.75 ± 0.164.75 ± 0.09
acs3.912.111.312.03 ± 1.770.87 ± 0.672.37 ± 0.59