TABLE 1

Genes upregulated by bile in all strains

Gene nameLocus tagProductLog2 fold change
TmTy2H58
fadIt04753-Ketoacyl-CoA thiolase4.122.552.52
fadJt0476Multifunctional fatty acid oxidation complex subunit alpha3.322.062.17
fadEt2541Acyl-CoA dehydrogenase7.444.704.18
fadBt3315Multifunctional fatty acid oxidation complex subunit alpha7.522.921.57
fadAt33163-Ketoacyl-CoA thiolase7.662.881.57
actPt4179Acetate permease3.411.581.27
t4180Hypothetical protein3.441.721.32
acst4181Acetyl-CoA synthetase3.912.111.31
acnAt1625Aconitate hydratase3.181.811.59
argTt0509Lysine-arginine-ornithine-binding periplasmic protein3.362.291.33
argDt1182Bifunctional succinylornithine transaminase/acetylornithine transaminase5.612.721.20
t0677Gentisate 1,2-dioxygenase2.513.913.38
t0678FAA-hydrolase-family protein2.093.212.87
t0679Glutathione-S-transferase-family protein2.092.892.49
t0680Salicylate hydroxylase1.272.092.03
t1787Oxidoreductase3.623.531.32
t1789Hypothetical protein3.174.041.44
t1790N-Acetylneuraminic acid mutarotase2.784.071.32
gabTt26874-Aminobutyrate aminotransferase5.182.931.74
msrAt4462Methionine sulfoxide reductase A1.681.671.30