Table 2.

Differences in the omp1 and MOMP sequences between strains of C. trachomatisa

Serovar/strainNucleotide or amino acid difference with strain:
B/TW-5B/Jali20Ba/Apache-2B/Alpha-95L2/434D/IU-72403D/IU-83786D/B185D/B120Da/EV293Da/TW448D/IC-Cal8L1/440E/Bour 1990F/IC-Cal3G/UW57A/SA1A/Har-13C/TW3H/UW4I/UW12Ia/IU-A4168J/UW36Ja/IU-A795K/UW53L3/404MoPn
B/TW-513131269747476757671707493181193212212219219217214214215219209266
B/Jali2066770666668676864636991178190209209215215214211211212215206259
Ba/Apache-256770696971707166656789176188219219217217214212212211217207256
B/Alpha-9556671666668676863627092175189220218218218215213213214218208257
L2/43424252524939295949589887393171162212212222221220218217218223208256
D/IU-72403242325242925451184477168181218218212208214212217218212212255
D/IU-83786b24232524282545964377168181218218212208214212217218212212255
D/B1852322242328331212114679167180207207209205212209214215209212255
D/B1202221232227221111104578167180208208210206213210215216210213255
Da/EV2932322242328332110114679166180209209209205213209214215209212255
Da/TW44823232423275365434074165183207207215213213209210211215209250
D/IC-Cal822222322264254513973164181206206216214213210211212216210251
L1/44026262527231817171617161575155176205205219222218216212213220208256
E/Bour 1990b23242223282222212021212020179166215216226230225224220226228220256
F/IC-Cal3606159585855555454535253535739228230234235235230226229240231274
G/UW57575755555655555454545353545116235237233234235231232234238236280
A/SA-15758616056595955555656555458646255953414539455249280
A/Har-135960636058616157575858575660666446254434740465350281
C/TW367676867666565636262646563677069293034373132293545285
H/UW460606160605656545454585858646966272922292023332435280
I/UW1257585857565858565656565655586665192120171322282833274
Ia/IU-A41685859595858585856565656565661656222241912814232528276
J/UW365758585758575755555555555458646120211814129152426278
Ja/IU-A795b6061606060606058585858585661666423241817131183430279
K/UW5359596059615857555555575758627167262720181818141838285
L3/40458585958575857555555575757626562222320171413131418283
MoPn7373727270727271717171717169767274767675727172747576
  • a Full-length sequences only. Numbers above the diagonal are nucleotide differences. Numbers below the diagonal are amino acid differences.

  • b D/IU-83786, E/Bour 1990, and Ja/IU-A795 are representatives of multiple strains with identical sequences. See Table1 and Results.