Table 4.

Database homologies of the ORFs in contig C

ORFBLASTx hitAccession no.OrganismExpect valueReference(s)
orfde1 Methionine aminopeptidase A (map) P53579 Synechocystissp.6e-59 21
orfde2 Serum resistance locus brkB D64004 Synechocystis sp.2e-07
Serum resistance locus brkB I40328 Bordetella pertussis 2e-04 11
orfde3 Putative undecaprenyl-phosphate N-acetylglucosaminyltransferase (tagO)gn1∣PID∣e11 Bacillus subtilis 1e-57Unpublished data
68896
Lipophilic protein which affects bacterial lysis rate and methicillin resistance level (llm) D21131 Staphylococcus aureus 4e-57 29
Undecaprenyl-phosphateN-acetylglucosaminyltransferase (rfe) S30678 Escherichia coli 4e-19 31
orfde4 EpsX X81320 Acinetobacter calcoaceticus 1e-25Unpublished data
Hypothetical 31.1-kDa protein in gnd-rfc intergenic region (orf264) P36667 E. coli 4e-12 27, 59
orfde5 RfbC protein S28579 Yersinia enterocolitica 0.14
dTDP-rhamnosyltransferase (rfbF) P37782 Shigella flexneri 0.14 33
orfde5_6 Unnamed protein product AB002668 Actinobacillus actinomycetemcomitans 5e-18 60
MigA U70729 Pseudomonas aeruginosa 5e-11 54
PssF AF028810 Rhizobium leguminosarum bv. viciae3e-09 18
orfde6 Glucose-1-phosphate thymidyltransferase (cps19fL) U09239 Streptococcus pneumoniae e-131 32
orfde7 dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) P26394 Salmonella enterica 1e-44 20
orfde8 dTDP-glucose-4,6-dehydratase (rmlB) D78182 Streptococcus mutans e-150 52
orfde9 32.3-kDacps19fO gene product U09239 S. pneumoniae 2e-97 32
dTDP-4-keto-l-rhamnose reductase (rmlD) AB000631 S. mutans 1e-94 51
orfde10 Unnamed protein product AB002668 A. actinomycetemcomitans 1e-30 60
ss-1,3-N-Acetylglucosaminyltransferase X85787 S. pneumoniae 0.001 22, 23
orfde11 Teichoic acid translocation permease protein TagG (tagG) P42953 B. subtilis 2e-48 25
O-antigen export system permease protein RfbA (rfbA) Q50862 Myxococcus xanthus 3e-23 14
orfde12 ATP-binding cassette membrane transporter AbcA (abcA) Q07698 Aeromonas salmonicida 5e-58 8
O-antigen export system ATP-binding protein RfbB (rfbB) Q50803 M. xanthus 8e-56 14
Teichoic acid translocation ATP-binding protein TagH (tagH) P42954 B. subtilis 1e-51 25
orfde13 No good match
orfde14 No good match
orfde15 Hypothetical 102.8-kDa protein Y4gI P55465 Rhizobium sp. strain NGR 2344e-68 12
O-antigen biosynthesis protein RfbC (rfbC) U36795 M. xanthus 5e-52 14
EpsI U40830 Streptococcus thermophilus 6e-14 50
EspG U93364 Lactococcus lactis cremoris 2e-12 53
β-1,4-Galactosyltransferase X85787 S. pneumoniae 1e-11 22, 23
orfde16 Hypothetical 102.8-kDa protein Y4gI O-antigen biosynthesis protein RfbC (rfbC) P55465 Rhizobiumsp. strain NGR234e-128 12
Q50864 M. xanthus 6e-16 14